GNU bug report logs - #54909
[PATCH] gnu: Add r-acgh.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#54909: closed ([PATCH] gnu: Add r-acgh.)
Date: Thu, 14 Apr 2022 10:00:02 +0000

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Your message dated Thu, 14 Apr 2022 11:59:30 +0200
with message-id <87v8vcvvc8.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add r-acgh.
has caused the debbugs.gnu.org bug report #54909,
regarding [PATCH] gnu: Add r-acgh.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
54909: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=54909
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-acgh.
Date: Wed, 13 Apr 2022 14:21:38 +0200

* gnu/packages/bioconductor.scm (r-acgh): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 803437a033..9a7a46502c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11642,6 +11642,30 @@ (define-public r-universalmotif
 motifs, and others.")
     (license license:gpl3)))
 
+(define-public r-acgh
+  (package
+    (name "r-acgh")
+    (version "1.72.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "aCGH" version))
+              (sha256
+               (base32
+                "1r1q6iq3g7svfn5m4jxlxp413djb40mvf6lh595y86sgwav5k6l4"))))
+    (properties `((upstream-name . "aCGH")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biobase r-cluster r-multtest r-survival))
+    (home-page "https://bioconductor.org/packages/aCGH")
+    (synopsis
+     "Classes and functions for array comparative genomic hybridization data")
+    (description
+     "This package provides functions for reading
+@dfn{array comparative genomic hybridization} (aCGH) data from image analysis
+output files and clone information files, creation of @code{aCGH} objects for
+storing these data.  Basic methods are accessing/replacing, subsetting,
+printing and plotting @code{aCGH} objects.")
+    (license license:gpl2)))
+
 ;; This is a CRAN package, but it depends on Bioconductor packages, so we put
 ;; it here.
 (define-public r-activedriverwgs
-- 
2.34.0

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 54909-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-acgh.
Date: Thu, 14 Apr 2022 11:59:30 +0200

Applied, thanks!

-- 
Ricardo

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