From unknown Sat Jun 14 03:49:13 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#54909 <54909@debbugs.gnu.org> To: bug#54909 <54909@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-acgh. Reply-To: bug#54909 <54909@debbugs.gnu.org> Date: Sat, 14 Jun 2025 10:49:13 +0000 retitle 54909 [PATCH] gnu: Add r-acgh. reassign 54909 guix-patches submitter 54909 M=C4=83d=C4=83lin Ionel Patra=C8=99cu severity 54909 normal tag 54909 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 13 08:21:57 2022 Received: (at submit) by debbugs.gnu.org; 13 Apr 2022 12:21:57 +0000 Received: from localhost ([127.0.0.1]:51952 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nec0T-0000Qf-Ge for submit@debbugs.gnu.org; Wed, 13 Apr 2022 08:21:57 -0400 Received: from lists.gnu.org ([209.51.188.17]:37726) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nec0S-0000QY-F4 for submit@debbugs.gnu.org; Wed, 13 Apr 2022 08:21:56 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:54418) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nec0S-0001S5-AP for guix-patches@gnu.org; Wed, 13 Apr 2022 08:21:56 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:46755) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nec0P-00034r-Cf for guix-patches@gnu.org; Wed, 13 Apr 2022 08:21:55 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 6F0BFA01BC for ; Wed, 13 Apr 2022 14:21:49 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1649852508; x=1651666909; bh=+Mrk+V/fC2QR9m4bIDlfFcW6QzPTNnJGTrTfSpYHkAM=; b=RIJ8YsCcdKGI 2Y7xG42MoWFqrzTvVo+UA+QTRKyzTKkQZe74eXjvcxh/yJNxRY7Jmau+If4AWeSE mmKSiNHsrCbMYwhXkesp8rGiF9E5jmYfoFgGqeLdvng+ePezJ4No+0tQBJfU9wo3 Rr+KbY9EO0AeRec1rajiy+YzfgQRFxk= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 3jb8PSwzaYJw for ; Wed, 13 Apr 2022 14:21:48 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Wed, 13 Apr 2022 14:21:48 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2375.24; Wed, 13 Apr 2022 14:21:47 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-acgh. Date: Wed, 13 Apr 2022 14:21:38 +0200 Message-ID: <20220413122138.29268-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.34.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1000-26830.007 X-TM-AS-Result: No-10--0.450800-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCxSHjB5Y+o5ZP5rVOs2bw4R65w itCGfmW8SKP5IDl01dS5rYfHE0OO90N7DjAdxZNTi8zVgXoAltsIJ+4gwXrEtwrbXMGDYqV8HTT +SR4FPADxTSEvPwWIxIXxsqzoa3FUS/+Ka096toWy68RXawC8XKFVj5NzWcedD049UZ3j9fVRHy HuVFJGeFq1Gwg9jr9q1tL3YH7ihvihCDgyssE8uo3yYJV8x0OrMUVc0s17dsX/q4TD2v7K1 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.450800-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1000-26830.007 X-TM-SNTS-SMTP: 27B9B11044FAEC40A17084004A1C3051F64CEB356203C6A4200CAF4265E7510B2000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-acgh): New variable. --- gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 803437a033..9a7a46502c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -11642,6 +11642,30 @@ (define-public r-universalmotif motifs, and others.") (license license:gpl3))) +(define-public r-acgh + (package + (name "r-acgh") + (version "1.72.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "aCGH" version)) + (sha256 + (base32 + "1r1q6iq3g7svfn5m4jxlxp413djb40mvf6lh595y86sgwav5k6l4")))) + (properties `((upstream-name . "aCGH"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase r-cluster r-multtest r-survival)) + (home-page "https://bioconductor.org/packages/aCGH") + (synopsis + "Classes and functions for array comparative genomic hybridization data") + (description + "This package provides functions for reading +@dfn{array comparative genomic hybridization} (aCGH) data from image analysis +output files and clone information files, creation of @code{aCGH} objects for +storing these data. Basic methods are accessing/replacing, subsetting, +printing and plotting @code{aCGH} objects.") + (license license:gpl2))) + ;; This is a CRAN package, but it depends on Bioconductor packages, so we put ;; it here. (define-public r-activedriverwgs -- 2.34.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 14 06:00:00 2022 Received: (at 54909-done) by debbugs.gnu.org; 14 Apr 2022 10:00:00 +0000 Received: from localhost ([127.0.0.1]:55228 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1newGe-0003a3-7G for submit@debbugs.gnu.org; Thu, 14 Apr 2022 06:00:00 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21110) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1newGb-0003Zu-4g for 54909-done@debbugs.gnu.org; Thu, 14 Apr 2022 05:59:59 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1649930394; cv=none; d=zohomail.com; s=zohoarc; b=eXpNquYrS9jh5i5nL8+DLlSLhz/tTkI2gyLEopeF8EiE91KNrE98k6AvxRetesFo8Ffhgb9euwYHDfBU6Y+fc2kTffkn06Tu6I4adY8vL/78jEtHg09GZTPxPPo311+foA42Uji03g9DJ6yHQ4sVIGjw7i7FpFwp8A7JHYKYydU= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1649930394; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=j41+wRIw0Wc8879Y7tmgbswmzjynmQ87EHU6hlE9sBSA5njkIWd+BNw3nWmdQNJ/h5cZhdD6aIF7eydKHB9LCCAt7u5IeRaoCPw5F1T14M5L8mL30+s9Obn9F7zbw+/YvtdDDf6E/zPfV1NdE6Sstw49KH+PVAHPrX+68jTJyeo= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1649930394; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=eJGNlotXD7fonKPLlscfuxhoaP9ZIgFbjJLZbTESWCTAe1bJzWE7GJRQA9AT/XSw 1uRIXzQsWfbG35GiJevSb4xwBGbr255MlHnk9Q/y8qBY8p/5zPw1KjjMQLOwvJ8egzy /8/LflNkXgIzziO2sTwJEko8GA8AQ9TuXcnPDxzc= Received: from localhost (152-108-142-46.pool.kielnet.net [46.142.108.152]) by mx.zohomail.com with SMTPS id 1649930393901893.8569451871249; Thu, 14 Apr 2022 02:59:53 -0700 (PDT) User-agent: mu4e 1.6.10; emacs 28.0.50 From: Ricardo Wurmus To: 54909-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-acgh. Date: Thu, 14 Apr 2022 11:59:30 +0200 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87v8vcvvc8.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54909-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo From unknown Sat Jun 14 03:49:13 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Thu, 12 May 2022 11:24:06 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator