GNU bug report logs - #54897
[PATCH] gnu: Add r-acde.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#54897: closed ([PATCH] gnu: Add r-acde.)
Date: Thu, 14 Apr 2022 11:19:01 +0000

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Your message dated Thu, 14 Apr 2022 13:18:27 +0200
with message-id <87a6cnx69c.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add r-acde.
has caused the debbugs.gnu.org bug report #54897,
regarding [PATCH] gnu: Add r-acde.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
54897: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=54897
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-acde.
Date: Wed, 13 Apr 2022 00:30:47 +0200

* gnu/packages/bioconductor.scm (r-acde): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 803437a033..87cbbb24fc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11642,6 +11642,31 @@ (define-public r-universalmotif
 motifs, and others.")
     (license license:gpl3)))
 
+(define-public r-acde
+  (package
+    (name "r-acde")
+    (version "1.24.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "acde" version))
+              (sha256
+               (base32
+                "13ks87am73m3bjn9ljapxml2a9cxdpgv9flwvly8aqmi3ndxyqi6"))))
+    (properties `((upstream-name . "acde")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-boot))
+    (home-page "https://bioconductor.org/packages/acde")
+    (synopsis
+     "Identification of differentially expressed genes with artificial components")
+    (description
+     "This package provides a multivariate inferential analysis method for
+detecting differentially expressed genes in gene expression data.  It uses
+artificial components, close to the data's principal components but with an
+exact interpretation in terms of differential genetic expression, to identify
+differentially expressed genes while controlling the @dfn{false discovery rate}
+(FDR).")
+    (license license:gpl3)))
+
 ;; This is a CRAN package, but it depends on Bioconductor packages, so we put
 ;; it here.
 (define-public r-activedriverwgs
-- 
2.34.0

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 54897-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-acde.
Date: Thu, 14 Apr 2022 13:18:27 +0200

Applied, thanks!

-- 
Ricardo

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