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Reply-To: bug#54887 <54887@debbugs.gnu.org> Date: Sun, 21 Sep 2025 07:09:24 +0000 retitle 54887 [PATCH] gnu: Add r-abarray. reassign 54887 guix-patches submitter 54887 M=C4=83d=C4=83lin Ionel Patra=C8=99cu severity 54887 normal tag 54887 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Tue Apr 12 12:16:15 2022 Received: (at submit) by debbugs.gnu.org; 12 Apr 2022 16:16:15 +0000 Received: from localhost ([127.0.0.1]:49508 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1neJBf-0006F1-0q for submit@debbugs.gnu.org; Tue, 12 Apr 2022 12:16:15 -0400 Received: from lists.gnu.org ([209.51.188.17]:59820) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1neJBa-0006El-2L for submit@debbugs.gnu.org; Tue, 12 Apr 2022 12:16:13 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:51910) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1neJBT-0007JP-Bm for guix-patches@gnu.org; Tue, 12 Apr 2022 12:16:09 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:43799) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1neJB8-00043M-Pp for guix-patches@gnu.org; Tue, 12 Apr 2022 12:15:56 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id C36D8A015C for ; Tue, 12 Apr 2022 18:15:22 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1649780121; x=1651594522; bh=JwyTNDAZGqN/qdOpvj+uhLzVUQTMtJ+y60I6HQAaBEE=; b=gffKZxn6EsOp JfjtxtMtuM4YkdAa1O6bR/Xjn/WWetOZuqJSAmZiPUfpI6mA/ElTMByQdYgtUkaj WEn+f7IjrYzSsvqTpxGTkvGYunuxjijgTLO/JFvwzOHIKMK9iaJ0rEg/1P0xElFZ p1ORbwzuk+mZzMLp5WvsF8vdRtmahiY= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id jeQO7WfX66Gy for ; Tue, 12 Apr 2022 18:15:21 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 12 Apr 2022 18:15:21 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2375.24; Tue, 12 Apr 2022 18:15:21 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-abarray. Date: Tue, 12 Apr 2022 18:15:09 +0200 Message-ID: <20220412161509.7792-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.34.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1000-26830.001 X-TM-AS-Result: No-10-0.429300-5.000000 X-TMASE-MatchedRID: n8dyCgqCzuv/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEBkr LtyHdvykBpzxkixO8HnuNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5oGAD6h6FZmEWdJDopy8ND7kYd nzk6dz7ZXDToX+3vXAqjbTboPFHpvv/kvhLshlRMqIkSpQVZGCBB0ENZnw1vtocwYjaqIPvDmi1 6k8x6UREZMrAiErCA2Yd00a6+9/yijxYyRBa/qJShNCXvA0fw+jaPj0W1qn0TKayT/BQTiGg99k QsVmPHEMfMHDZKBSPzzmcHUvFGe235rXpPmAzjIP+vksj5P3WmgLA0v+FIczPTK/H9q/wrrlsEw GpCZkDg7S6v8CWHWtsNhJB9vAxVGtOdWe/Uk/vuwZO9kmaWWvP8+E8vSQCkfQ5+gyyDasGNDDKa 3G4nrLQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.429300-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1000-26830.001 X-TM-SNTS-SMTP: 2BBC4A440A984E7A19D0C15DC4AC145E355284B9AFEF268BB0988646B6E504132000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-abarray): New variable. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 803437a033..fffbf3da87 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1139,6 +1139,32 @@ (define-public r-abadata All datasets are restricted to protein coding genes.") (license license:gpl2+))) +(define-public r-abarray + (package + (name "r-abarray") + (version "1.62.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ABarray" version)) + (sha256 + (base32 + "0yh7jmkwdg3kmm98ii0cxbla3s5bwy84fpg6xcpggsrriwzwfb5k")))) + (properties `((upstream-name . "ABarray"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase r-multtest)) + (home-page "https://bioconductor.org/packages/ABarray") + (synopsis + "Gene expression analysis for Applied Biosystems Genome Survey Microarray") + (description + "The package @code{ABarray} is designed to work with Applied Biosystems +whole genome microarray platform, as well as any other platform whose data can +be transformed into expression data matrix. Functions include data +preprocessing, filtering, control probe analysis, statistical analysis in one +single function. A @dfn{graphical user interface} (GUI) is also provided. The +raw data, processed data, graphics output and statistical results are organized +into folders according to the analysis settings used.") + (license license:gpl2+))) + (define-public r-aneufinderdata (package (name "r-aneufinderdata") -- 2.34.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 14 07:25:42 2022 Received: (at 54887-done) by debbugs.gnu.org; 14 Apr 2022 11:25:42 +0000 Received: from localhost ([127.0.0.1]:55442 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nexba-00068n-Ke for submit@debbugs.gnu.org; Thu, 14 Apr 2022 07:25:42 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21165) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nexbY-00068h-Hq for 54887-done@debbugs.gnu.org; Thu, 14 Apr 2022 07:25:41 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1649935539; cv=none; d=zohomail.com; s=zohoarc; b=anHHYJd7EWeL9tIixZC7pvyFppKP5SIMLTNclF2PRI6CBurCxF/P+JnzqMzl5+zvUHyDCx2fPEd2yVkMo3XedvZUB3mYHPqhxhMBwrkObzSj145W/4hf7udWuOc6Yz8BPYkkdKrHPQPXtLvuD/LiB6bUAcKD6nt7OUUO+nf66MM= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1649935539; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=ZOkE02iCG4GjqzzhcoHewaU8WudkiT5X+h4/KYOxrq5Ha2PiECwnNaPuBKF4symuTHwvOmDStwTtzYydhYUzOS2aBJsTRTQC0pzbpzJTfTsSUJqV5ff5M8wzydTbpYE8KOu69p6t/ZonfkFHUJRX1Gr2AoGgaAaJKXVIcRTsVVU= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1649935539; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=diL6Vqz8Io9Hx9kHr6YyJVA44ilMOk3P4DcimhAYqHPkgQ5zbZ868NyBkcICszOR Y4YlgLbO3ZZ6KTEOFPviAEjAR2JMixP0sJhOxYWrEmqfZQsi4QSHXMs0PXjfXKwvonW BS6yyFqlcslSGh8Z2lZBA0BvIoQiVtPrYtftMPkg= Received: from localhost (152-108-142-46.pool.kielnet.net [46.142.108.152]) by mx.zohomail.com with SMTPS id 1649935537979462.54678971372596; Thu, 14 Apr 2022 04:25:37 -0700 (PDT) User-agent: mu4e 1.6.10; emacs 28.0.50 From: Ricardo Wurmus To: 54887-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-abarray. 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