From debbugs-submit-bounces@debbugs.gnu.org Mon Apr 11 21:22:12 2022 Received: (at submit) by debbugs.gnu.org; 12 Apr 2022 01:22:12 +0000 Received: from localhost ([127.0.0.1]:46552 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ne5ES-0003TP-61 for submit@debbugs.gnu.org; Mon, 11 Apr 2022 21:22:12 -0400 Received: from lists.gnu.org ([209.51.188.17]:58240) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ne5EQ-0003TA-Hu for submit@debbugs.gnu.org; Mon, 11 Apr 2022 21:22:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41776) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ne5EQ-0003st-8I for guix-patches@gnu.org; Mon, 11 Apr 2022 21:22:10 -0400 Received: from mail-40136.proton.ch ([185.70.40.136]:43874) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ne5EM-0001V2-HM for guix-patches@gnu.org; Mon, 11 Apr 2022 21:22:09 -0400 Date: Tue, 12 Apr 2022 01:21:57 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1649726521; bh=ZLa0rdYLK3F85iwt/eaQbcs+edfsr5oxE4QB2GRbpW0=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:From:To:Cc:Date: Subject:Reply-To:Feedback-ID:Message-ID; b=gFGa0Ncr+jCD+D/ArowV5poT1Vz+1baNUN5jCZNz+KW1EUnSJAzUEx3ztsIjc8lbw K7sKn+KgRfpEHTkRJfm4poAMuBiasjKK2NoTjHES+oIERzv7WfqzPD6YkPGnnjGaNL QSEbHxwxZg9hwQOINwz23P9rJPEJCFm847UwaYNC6laVbaCOtNXMBkwpG4uG1+BRN1 2hTjt9TF8lIAEUJhSQvabBPYCHV3b6u3gT3/MimObxfjn1Qz5QxiTCYXZRpASv3x8F bDefKnDpgLNea1yvuTw/S83ShbEHwcS91rTS51KwK0euLOlCGFjk+8QL/rDR4iWfYW K39WtARDXPHng== To: guix-patches@gnu.org From: "Paul A. Patience" Subject: [PATCH 0/5] gnu: python-vedo: Update to 2022.2.0 and sanity-check failures. Message-ID: <20220412012143.30573-1-paul@apatience.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=185.70.40.136; envelope-from=paul@apatience.com; helo=mail-40136.proton.ch X-Spam_score_int: -19 X-Spam_score: -2.0 X-Spam_bar: -- X-Spam_report: (-2.0 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_MSPIKE_H4=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01, URIBL_SBL_A=0.1 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -0.6 (/) X-Debbugs-Envelope-To: submit Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.6 (-) Hello, The following patch series updates python-vedo to its latest version, and also adds support for the #:tests? flag to fenics-dolfin, fenics and python-vedo. Unfortunately, I can't get fenics or python-vedo to build except by deleting the sanity-check phase, and this even before applying any of my patches. (I've confirmed that my patches are correct by testing the builds without sanity-checks, so applying them shouldn't be an issue.) The following is the sanity-check error obtained when building fenics: starting phase `sanity-check' validating 'fenics-dolfin' /gnu/store/lkb8mx8dk82znkzfgnx1k1mklaj9b34d-feni= cs-2019.1.0.post0/lib/python3.9/site-packages ...checking requirements: ERROR: fenics-dolfin=3D=3D2019.1.0 ContextualVers= ionConflict(pybind11 2.8.1 (/gnu/store/qmxw9dqqywrlllzlidv09f2nazirjwk7-pyb= ind11-2.8.1/lib/python3.9/site-packages), Requirement.parse('pybind11=3D=3D= 2.2.4'), {'fenics-dolfin'}) error: in phase 'sanity-check': uncaught exception: %exception #<&invoke-error program: "python" arguments: ("/gnu/store/35ix1m= 6m8a5s21j02ajhdyqxb2xkshfb-sanity-check.py" "/gnu/store/lkb8mx8dk82znkzfgnx= 1k1mklaj9b34d-fenics-2019.1.0.post0/lib/python3.9/site-packages") exit-stat= us: 1 term-signal: #f stop-signal: #f> phase `sanity-check' failed after 0.2 seconds Note that it complains that pybind11 is not at version 2.2.4, but when fenics was last updated (in commit 37bb0d1eafb3f08a204aed8c928cbf7cbc69cd19= ), the version of pybind11 at the time was 2.3.0, so this would appear to be either a new issue, or an issue specific to my machine (foreign distro). The sanity-check errors from vedo are similarly bizarre -- they complain about a missing vtk, but it is there in the propagated inputs. With old version of python-vedo: starting phase `sanity-check' validating 'vedo' /gnu/store/4h10widg2y0nhvacz8mricn187qzw9dq-python-vedo-2= 021.0.3/lib/python3.9/site-packages ...checking requirements: ERROR: vedo=3D=3D2021.0.3 DistributionNotFound(Re= quirement.parse('vtk'), {'vedo'}) error: in phase 'sanity-check': uncaught exception: %exception #<&invoke-error program: "python" arguments: ("/gnu/store/35ix1m= 6m8a5s21j02ajhdyqxb2xkshfb-sanity-check.py" "/gnu/store/4h10widg2y0nhvacz8m= ricn187qzw9dq-python-vedo-2021.0.3/lib/python3.9/site-packages") exit-statu= s: 1 term-signal: #f stop-signal: #f> phase `sanity-check' failed after 0.2 seconds With updated version of python-vedo (i.e., including the python-deprecated propagated input): starting phase `sanity-check' validating 'vedo' /gnu/store/a6g20gkvi1l70arh2rm53x7gm30dzqcp-python-vedo-2= 022.2.0/lib/python3.9/site-packages ...checking requirements: ERROR: vedo=3D=3D2022.2.0 DistributionNotFound(Re= quirement.parse('vtk<9.1.0'), {'vedo'}) error: in phase 'sanity-check': uncaught exception: %exception #<&invoke-error program: "python" arguments: ("/gnu/store/35ix1m= 6m8a5s21j02ajhdyqxb2xkshfb-sanity-check.py" "/gnu/store/a6g20gkvi1l70arh2rm= 53x7gm30dzqcp-python-vedo-2022.2.0/lib/python3.9/site-packages") exit-statu= s: 1 term-signal: #f stop-signal: #f> phase `sanity-check' failed after 0.2 seconds The latest commit of fenics (there isn't a newer release than the one included in Guix) no longer requires a specific version of pybind11 [1], and in addition, it seems the focus is on the dolfinx project [2] rather than dolfin (dolfin is already considered legacy [3]), so perhaps it would be worth updating the fenics package to the latest git commit. That wouldn't solve the problem python-vedo's sanity-check is encountering, though. Any help would be appreciated. Best regards, Paul [1]: https://bitbucket.org/fenics-project/dolfin/src/d29e24d19eab5200a55e43= a3e18e1f38214fb5a8/python/setup.py#lines-22) [2]: https://github.com/FEniCS/dolfinx [3]: https://fenicsproject.org/ Paul A. Patience (5): gnu: fenics-dolfin: Honor #:tests? flag. gnu: fenics: Honor #:tests? flag. gnu: python-vedo: Honor #:tests? flag. gnu: python-vedo: Remove input labels. gnu: python-vedo: Update to 2022.2.0. gnu/packages/python-science.scm | 35 ++++++++++++++++---------------- gnu/packages/simulation.scm | 36 +++++++++++++++++---------------- 2 files changed, 37 insertions(+), 34 deletions(-) -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Apr 12 02:00:57 2022 Received: (at control) by debbugs.gnu.org; 12 Apr 2022 06:00:57 +0000 Received: from localhost ([127.0.0.1]:47129 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ne9aD-0002Pw-0x for submit@debbugs.gnu.org; Tue, 12 Apr 2022 02:00:57 -0400 Received: from mailrelay.tugraz.at ([129.27.2.202]:23663) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ne9aA-0002Pi-FC for control@debbugs.gnu.org; Tue, 12 Apr 2022 02:00:55 -0400 Received: from lprikler-laptop.ist.intra (gw.ist.tugraz.at [129.27.202.101]) by mailrelay.tugraz.at (Postfix) with ESMTPSA id 4Kcw7k5km8z1LLyW for ; Tue, 12 Apr 2022 08:00:50 +0200 (CEST) DKIM-Filter: OpenDKIM Filter v2.11.0 mailrelay.tugraz.at 4Kcw7k5km8z1LLyW DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=tugraz.at; s=mailrelay; t=1649743250; bh=FsNDWPPUjcRYUyJbvVTdLvsimDIdBys8RiLuJEH5ask=; h=Subject:From:To:Date:From; b=stZUOAAGaLxrIzatQsG65TCW4wA4ew+VksYOlwAWjXAAYmSXDZrMGwaiwoT0X9QpA AQpa0vCdDl06HBQaiuvx4YSgziwz1Ss+mKSg/j6ruuFuTk1B1NHrRUO9nPvJ9JXMgA ICVg5tpg/kjh1JfHc2rm6Sgn7PIQlG0UxNPA0WS0= Message-ID: Subject: From: Liliana Marie Prikler To: control@debbugs.gnu.org Date: Tue, 12 Apr 2022 08:00:49 +0200 Content-Type: text/plain User-Agent: Evolution 3.42.1 MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-TUG-Backscatter-control: waObeELIUl4ypBWmcn/8wQ X-Spam-Scanner: SpamAssassin 3.003001 X-Spam-Score-relay: -1.9 X-Scanned-By: MIMEDefang 2.74 on 129.27.10.117 X-Spam-Score: 1.4 (+) X-Spam-Report: Spam detection software, running on the system "debbugs.gnu.org", has NOT identified this incoming email as spam. The original message has been attached to this so you can view it or label similar future email. If you have any questions, see the administrator of that system for details. Content preview: merge 54869 54870 54871 54872 54873 54874 thanks Content analysis details: (1.4 points, 10.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- -2.3 RCVD_IN_DNSWL_MED RBL: Sender listed at https://www.dnswl.org/, medium trust [129.27.2.202 listed in list.dnswl.org] 0.0 RCVD_IN_MSPIKE_H3 RBL: Good reputation (+3) [129.27.2.202 listed in wl.mailspike.net] 0.0 SPF_HELO_NONE SPF: HELO does not publish an SPF Record 0.0 SPF_NONE SPF: sender does not publish an SPF Record 0.0 RCVD_IN_MSPIKE_WL Mailspike good senders 2.0 BLANK_SUBJECT Subject is present but empty -0.0 T_SCC_BODY_TEXT_LINE No description available. 1.7 BODY_EMPTY No body text in message X-Debbugs-Envelope-To: control X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: 0.4 (/) merge 54869 54870 54871 54872 54873 54874 thanks From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 07:53:17 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 11:53:18 +0000 Received: from localhost ([127.0.0.1]:51768 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqf-0007WH-Mr for submit@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:17 -0400 Received: from mail-4323.proton.ch ([185.70.43.23]:52328) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqd-0007Vy-7r for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:16 -0400 Date: Fri, 22 Apr 2022 11:53:05 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650628387; bh=q9pasZgFWyu7/qoccYqySK5vOyjbrMpM4pcsqKsXpKs=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:Feedback-ID:From:To: Cc:Date:Subject:Reply-To:Feedback-ID:Message-ID; b=ZE6GHmOgG+bZgeNPzwn3zm/pw6kXwVhjU13KAVsiEpZB7wo0MsxKlC1/9BJI84+gl IUaNmJdm/x6cSEZvx9kcc7eXElnhhbHrD7Z8GgbRzIy+eSphWID2N48vfhTOCYvSjK 6RYwgfGS7e8Zzz9WQVVfHun1kCTp3jiY3sFABENPXIOfgs4CuW8gylxK6eBtVUQuf7 E8VANPQIuFz2vFHduPZ7yjACgpu2s1rYxaHIRGBzgd3R6Y7CuhtHLgAnO8jwfUlPQh FUVfMVlk5nZ8lptsFout4MwZ+4xeYBb4jqOWv2VGIWri0m0rU8HNWk1qjAuUFrm/Kh Vn6WrAypSeb1Q== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v2 0/7] gnu: python-vedo: Update to 2022.2.0. Message-ID: <20220422115258.63649-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) I've fixed the sanity check issues in this patch series, along with some ot= her minor things (particularly in the python-vedo package). There is still one problem, though, but it has been present (for me) since before any of these patches: one of the fenics tests around 24 % of the tes= t suite hangs. I have to build it with --without-tests=3Dfenics, but since it was present = since before, I haven't disabled the tests in the fenics package. Oh, also, I tried to remove the input labels from fenics-dolfin, but ran in= to build errors (failing to find catch.cpp). Paul A. Patience (7): gnu: fenics-dolfin: Honor #:tests? flag. gnu: fenics: Honor #:tests? flag. gnu: fenics: Fix sanity check. gnu: python-vedo: Honor #:tests? flag. gnu: python-vedo: Remove input labels. gnu: python-vedo: Disable sanity check. gnu: python-vedo: Update to 2022.2.0. gnu/packages/python-science.scm | 57 ++++++++++++++++++++------------- gnu/packages/simulation.scm | 40 +++++++++++++---------- 2 files changed, 58 insertions(+), 39 deletions(-) -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 07:53:23 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 11:53:23 +0000 Received: from localhost ([127.0.0.1]:51774 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqk-0007Wg-TY for submit@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:23 -0400 Received: from mail-4022.proton.ch ([185.70.40.22]:42087) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqj-0007W8-Df for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:21 -0400 Date: Fri, 22 Apr 2022 11:53:08 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650628395; bh=o2f4XfrY+uuhnZIIUGf0HLR71OZ1gAIU0C5r3KtWUuA=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=NNKuN4QENqgMz+k1SNEfkdnT9CSCqS0t03cPVRSsswLGK2Q984+VbB+dqLEJ+l+8V KoCbE0Bw/yv/6Dh5Y0NeZbEwgJuvuICsx09oUx2Ku+YIJ6CNARXtA/ZhOnBUSsJ1A1 0g2zrSvuaKNLhmE3gu305g95+NYqMfJ2CPjUQKzG2df14aoAf0jht8Otkg4lWDVH+Q +Wq8J7EkksEO+fessxvqCNWZB/nWI76/XYMd+KviGs0hVUhk1p8xYUUI5bBWct8SaO VF12zmBfjVvhpXc9uEoEd27645LB0WI4AtITbiDwbrpJJZ8qflGpPzkI+eSiRNtMJM /7buKCoFvCTKg== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v2 1/7] gnu: fenics-dolfin: Honor #:tests? flag. Message-ID: <20220422115258.63649-2-paul@apatience.com> In-Reply-To: <20220422115258.63649-1-paul@apatience.com> References: <20220422115258.63649-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.7 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.3 (/) * gnu/packages/simulation.scm (fenics-dolfin)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. --- gnu/packages/simulation.scm | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 3f2d8e136d..aebb6be15e 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -549,12 +549,13 @@ (define-public fenics-dolfin ")\n") port))) #t)) (replace 'check - (lambda _ - (and (invoke "make" "unittests") - (invoke "make" "demos") - (invoke "ctest" "-R" "unittests") - (invoke "ctest" "-R" "demo" "-R" "serial") - (invoke "ctest" "-R" "demo" "-R" "mpi"))))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (and (invoke "make" "unittests") + (invoke "make" "demos") + (invoke "ctest" "-R" "unittests") + (invoke "ctest" "-R" "demo" "-R" "serial") + (invoke "ctest" "-R" "demo" "-R" "mpi")))))))) (home-page "https://bitbucket.org/fenics-project/dolfin/") (synopsis "Problem solving environment for differential equations") (description -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 07:53:25 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 11:53:25 +0000 Received: from localhost ([127.0.0.1]:51776 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqn-0007Wp-6G for submit@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:25 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:12841) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqk-0007W9-41 for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:22 -0400 Date: Fri, 22 Apr 2022 11:53:11 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650628396; bh=iGhOR2/z0QqlI2pfplTQdsRDHas+rMjPxKEdw7RmeYM=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=VIdKm8wR9K3S+x+bTB9BowA0i78b5/Jql/G+5x1+t9RvIvwiNQvUGDUAeAK1gLBhR KKKmVr5Xac1TZRIJZeGIx6q7Uu2Hsk3wSYfd2frb00vL+nEthntPpa/FQA+XIddCMe Kqgd3ZLe4P99nvyFiWy5H5b3DiNdvHsYtFmDXaNk+RAfhx61ARriANDoCGMmwRuMsz iE1mAkv4uoKG7fiea4FUsDArxi+Ld1lSmb3ZFJqN2TK8dTV5GprGvxANTwxhbsauTG q7Zr6h2V3AKKnuLQJpqN0H0CJvTBtE05LhWAMIZZWKyivMvzDyZF4AAeeK640f9+Kx UPDfy5Jaj3AJA== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v2 2/7] gnu: fenics: Honor #:tests? flag. Message-ID: <20220422115258.63649-3-paul@apatience.com> In-Reply-To: <20220422115258.63649-1-paul@apatience.com> References: <20220422115258.63649-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/simulation.scm (fenics)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. --- gnu/packages/simulation.scm | 23 ++++++++++++----------- 1 file changed, 12 insertions(+), 11 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index aebb6be15e..3260841608 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -660,17 +660,18 @@ (define-public fenics ;; Restrict OpenBLAS to MPI-only in preference to MPI+OpenMP. (setenv "OPENBLAS_NUM_THREADS" "1"))) (replace 'check - (lambda _ - (with-directory-excursion "test" - ;; Note: The test test_snes_set_from_options() in the file - ;; unit/nls/test_PETScSNES_solver.py fails and is ignored. - ;; Limit the number of jobs to 3 as 500 MiB of memory is us= ed - ;; per process. - (invoke "mpirun" "-np" (number->string - (min 3 (parallel-job-count))) - "python" "-B" "-m" - "pytest" "unit" "--ignore" - "unit/nls/test_PETScSNES_solver.py")))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (with-directory-excursion "test" + ;; Note: The test test_snes_set_from_options() in the fil= e + ;; unit/nls/test_PETScSNES_solver.py fails and is ignored= . + ;; Limit the number of jobs to 3 as 500 MiB of memory is = used + ;; per process. + (invoke "mpirun" "-np" (number->string + (min 3 (parallel-job-count))) + "python" "-B" "-m" + "pytest" "unit" "--ignore" + "unit/nls/test_PETScSNES_solver.py"))))) (add-after 'install 'install-demo-files (lambda* (#:key outputs #:allow-other-keys) (let* ((demos (string-append -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 07:53:28 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 11:53:28 +0000 Received: from localhost ([127.0.0.1]:51782 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqq-0007XB-DQ for submit@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:28 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:64167) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqo-0007WS-Oi for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:27 -0400 Date: Fri, 22 Apr 2022 11:53:14 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650628400; bh=KpDzeNWOr9fzo1SN/9ZzY5dFGO5KscG1+DwteFz+kmE=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=E4yX+vjgfkSCWAh6YTIwTkk38AajTYp1GdP7eoUNYxw+uGnUL9dfBVe9Wt9MpIFgZ /8ObaYltIqWwRuE9ttBxwE/ZALDIf6hHuremFDr2LZ7zHciOp3ZScgulHYVzMS79Q1 fg1xAIRcGay7998QuWQpaTypk5Df7rcUh8Vlg83QjpY/hFs4FW3RAVws08/1N5Jheo Rlvdtfpp16Gae5rpvrn9Z96zcOI5mIlVu7Nba7QD4OdUalaBcfbhU5JDb7bcVqyL3u L8f0FlggR2FBXWTJfInVY27hXkQn7BpMRdNVygAT51Sn0SWsN46aPfFSLHsmKgojTQ B2G/TETFSqMkQ== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v2 3/7] gnu: fenics: Fix sanity check. Message-ID: <20220422115258.63649-4-paul@apatience.com> In-Reply-To: <20220422115258.63649-1-paul@apatience.com> References: <20220422115258.63649-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/simulation.scm (fenics)[arguments]: Relax pybind11 requirement to appease the sanity check. --- gnu/packages/simulation.scm | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 3260841608..b0f6046022 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -610,6 +610,10 @@ (define-public fenics (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "python/setup.py" + (("pybind11=3D=3D") "pybind11>=3D")))) (add-after 'patch-source-shebangs 'set-paths (lambda _ ;; Define paths to store locations. -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 07:53:31 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 11:53:31 +0000 Received: from localhost ([127.0.0.1]:51784 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqs-0007XO-Pa for submit@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:30 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:51827) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqp-0007Wb-PJ for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:28 -0400 Date: Fri, 22 Apr 2022 11:53:17 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650628402; bh=Dwarics/nuuxaWFkfV7M5LbVN5sNoPDr2R7MwfVZUic=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=Hf4K7Nz5fK6zg1SO0AAqlwLWa+RaMese3hwcDrDkrSap4RBxrOepYUttlslLSm7Dn nXwMIXrbM/RwFNIi22r+J7LYpFm5GAAjzZ0tVov+WhVDaqQMXFeLwlQklD1WQyYM/d LBApI+fTCzA9+NljXQFpRACTgeoCKfX+3hQNWsV4LQ4KtkZWflItfIKHa585HO+yMq m05XVQyBnwVtUjSrPhYY0QgGZ2S77+s5F/SEorQ7Uyo5isCyy+/q11DUZUi2f1DoHx cNG+qEJAWpS3FALZ52SJnbSrOs4gRfXcEVPaZHdDSmVfMDwU2JhHV3dZwKcWsJZNZq Zcx75BOeZXENw== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v2 4/7] gnu: python-vedo: Honor #:tests? flag. Message-ID: <20220422115258.63649-5-paul@apatience.com> In-Reply-To: <20220422115258.63649-1-paul@apatience.com> References: <20220422115258.63649-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-vedo)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. Also remove its trailing boolean. --- gnu/packages/python-science.scm | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.= scm index 07d713e013..4538904b68 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -876,15 +876,15 @@ (define-public python-vedo (add-after 'build 'mpi-setup ,%openmpi-setup) (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (setenv "HOME" (getcwd)) - (add-installed-pythonpath inputs outputs) - (with-directory-excursion "tests" - (for-each (lambda (dir) - (with-directory-excursion dir - (invoke "./run_all.sh"))) - '("common" "dolfin"))) - #t))))) + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (setenv "HOME" (getcwd)) + (add-installed-pythonpath inputs outputs) + (with-directory-excursion "tests" + (for-each (lambda (dir) + (with-directory-excursion dir + (invoke "./run_all.sh"))) + '("common" "dolfin"))))))))) (inputs ; for the check phase `(("dolfin" ,fenics) ("pkgconfig" ,python-pkgconfig) -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 07:53:35 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 11:53:35 +0000 Received: from localhost ([127.0.0.1]:51790 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqx-0007Xk-10 for submit@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:35 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:29698) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqs-0007Wx-UD for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:31 -0400 Date: Fri, 22 Apr 2022 11:53:23 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650628405; bh=tr1L2eLKA65s3YzSRsc0+JJ8IBWJhFrS/V12ySguSkQ=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=V/BW0MN41OygUmrzERbjxgwyN5KB8U67PhhxLYKEFzUhXf8sze301ch6Zkeqns0px NT9ojyNuZFvDwsfi5jDArwUaM5OGHmJN/VmpQwLzd8Hb97nalGmdEz3rTHfqJUyq1g 8PQV4b4VyCX2oqu7L2wyj1pGhiKt01Gz+CtfNt5YlszjCja17Fqbi/TuV+eW+Y91qB SvBdgUEBwSsT8FFnf0r1eKt0z/pzwa3ZNW95pnF2sqGfFoVlPHf6I2kWbrPnL4BSPl PoilydcSb61lT6sLcGDtlPxFRqoetvsqH58RQYp2KLu9PWPCN/UdGTeRpjIqbyOOGB VVZ5hkbSbvKsQ== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v2 6/7] gnu: python-vedo: Disable sanity check. Message-ID: <20220422115258.63649-7-paul@apatience.com> In-Reply-To: <20220422115258.63649-1-paul@apatience.com> References: <20220422115258.63649-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-vedo)[arguments]: Disable sanity check. --- gnu/packages/python-science.scm | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.= scm index 3afaa0efc2..d0fca49aaf 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -884,7 +884,13 @@ (define-public python-vedo (for-each (lambda (dir) (with-directory-excursion dir (invoke "./run_all.sh"))) - '("common" "dolfin"))))))))) + '("common" "dolfin")))))) + ;; Disable the sanity check, which fails with the following error= : + ;; + ;; ...checking requirements: ERROR: vedo=3D=3D2021.0.3 Distribu= tionNotFound(Requirement.parse('vtk'), {'vedo'}) + ;; + ;; Probably it cannot find VTK because it isn't a Python library. + (delete 'sanity-check)))) (inputs ; for the check phase (list fenics python-matplotlib -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 07:53:35 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 11:53:35 +0000 Received: from localhost ([127.0.0.1]:51792 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqx-0007Xm-Cf for submit@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:35 -0400 Received: from mail-4018.proton.ch ([185.70.40.18]:17882) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrqu-0007Wz-Gr for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:32 -0400 Date: Fri, 22 Apr 2022 11:53:20 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650628406; bh=RMA0eOqbrT54fixWwH1NksStjUAMXMEEGd8mFls+2xQ=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=P6ZVAVCWGJBxdG3fr3Wsyv+BOjkU1z4j1UTD2U0Lk05OPL2izHcOjHeIUatXLKBVz MW03Eo6LfRoxJdt0OE/0Ag1096YZ3DrbBeI87snHwuVAIgwci//J3AbDbHBCjrNexA lHRNOxR3eJugfRoNKWJsu/zwAH12fEzQlQm+6KIdfcdWygnvaHjKgioJOz6l2mBson TxjkBC18cBKpUYn9NFcWS5DLVtSTN1Wx4LgH3uR228CFgYbJwv/849LXkaKiN6lcQ2 gnzW4UwaKXyBSBpXgRmKknT28ALLffrljFeukQ9P/aH7MTEd1sUn5kLcmOyOEJXPON tWK+KgM9QbW2g== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v2 5/7] gnu: python-vedo: Remove input labels. Message-ID: <20220422115258.63649-6-paul@apatience.com> In-Reply-To: <20220422115258.63649-1-paul@apatience.com> References: <20220422115258.63649-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-vedo)[inputs]: Remove labels and sort the inputs. [propagated-inputs]: Remove labels. --- gnu/packages/python-science.scm | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.= scm index 4538904b68..3afaa0efc2 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -886,14 +886,14 @@ (define-public python-vedo (invoke "./run_all.sh"))) '("common" "dolfin"))))))))) (inputs ; for the check phase - `(("dolfin" ,fenics) - ("pkgconfig" ,python-pkgconfig) - ("matplotlib" ,python-matplotlib))) + (list fenics + python-matplotlib + python-pkgconfig)) (native-inputs ; for python-pkgconfig (list pkg-config)) (propagated-inputs - `(("numpy" ,python-numpy) - ("vtk" ,vtk))) + (list python-numpy + vtk)) (home-page "https://github.com/marcomusy/vedo") (synopsis "Analysis and visualization of 3D objects and point clouds") -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 07:53:48 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 11:53:48 +0000 Received: from localhost ([127.0.0.1]:51796 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrr9-0007YI-M1 for submit@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:47 -0400 Received: from mail-4022.proton.ch ([185.70.40.22]:43194) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhrr7-0007Y3-Cp for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 07:53:46 -0400 Date: Fri, 22 Apr 2022 11:53:32 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650628418; bh=EaAxyR+H1bm3Pne2AfVyv/6v9kefxDueCZMxiMS//dY=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=Ywe4MKwliqNZrZ8tVEe2qn/1UVIBemrPNVxGB1pL06hfAGaIh8QjvlY3fkVeilXIA hMgDwy16CJngYbfjEPghyOS504v2gSkNEqkYaE/4FoSzdHHeiJSo+Zl5yl9Xve1y0v 2OxWmUeHuMFHQQJzforxpFsLpO98oCKa3SAI2PrKfUYRM7yt+uTBHO0xDh2Q7hZUtc 75779QJYo2XdDghWynx/IknauHqYDKAcynalPlWXdwe/ByPbnmc8oxp4Obp4AIUlSb m8nnr14DegBbUwJGTBnZgUWGKf3MbMvN14+aXwOl/5wVEJVWEPJIp005SNiimgkWjL xR6ELEY2WOYvQ== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v2 7/7] gnu: python-vedo: Update to 2022.2.0. Message-ID: <20220422115258.63649-8-paul@apatience.com> In-Reply-To: <20220422115258.63649-1-paul@apatience.com> References: <20220422115258.63649-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-vedo): Update to 2022.2.0. [arguments]: Add 'fix-tests' phase. [inputs]: Move fenics and python-matplotlib to propagated-inputs. Move python-pkgconfig from here... [native-inputs]: ...to here. [propagated-inputs]: Add python-deprecated (and fenics and python-matplotlib). [description]: Make description more accurate. --- gnu/packages/python-science.scm | 31 +++++++++++++++++++------------ 1 file changed, 19 insertions(+), 12 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.= scm index d0fca49aaf..b1fc94cecc 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -17,6 +17,7 @@ ;;; Copyright =C2=A9 2021 Felix Gruber ;;; Copyright =C2=A9 2022 Malte Frank Gerdes ;;; Copyright =C2=A9 2022 Guillaume Le Vaillant +;;; Copyright =C2=A9 2022 Paul A. Patience ;;; ;;; This file is part of GNU Guix. ;;; @@ -858,21 +859,28 @@ (define-public python-upsetplot (define-public python-vedo (package (name "python-vedo") - (version "2021.0.3") + (version "2022.2.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/marcomusy/vedo") - (commit version))) + (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 - "18i3ajh5jzhpc86di15lwh4jv97jhm627ii877sa4yhv6abzjfpn")))) + "1hhv4xc4bphhd1zrnf7r6fpf65xvkdqmb1lh51qg1xpv91h2az0h")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-tests + ;; These tests require online data. + (lambda _ + (substitute* "tests/common/test_actors.py" + (("^st =3D .*") "") + (("^assert isinstance\\(st\\.GetTexture\\(\\), .*") "")) + (delete-file "tests/common/test_pyplot.py"))) (add-after 'build 'mpi-setup ,%openmpi-setup) (replace 'check @@ -887,18 +895,18 @@ (define-public python-vedo '("common" "dolfin")))))) ;; Disable the sanity check, which fails with the following error= : ;; - ;; ...checking requirements: ERROR: vedo=3D=3D2021.0.3 Distribu= tionNotFound(Requirement.parse('vtk'), {'vedo'}) + ;; ...checking requirements: ERROR: vedo=3D=3D2022.2.0 Distribu= tionNotFound(Requirement.parse('vtk<9.1.0'), {'vedo'}) ;; ;; Probably it cannot find VTK because it isn't a Python library. (delete 'sanity-check)))) - (inputs ; for the check phase - (list fenics - python-matplotlib + (native-inputs + (list pkg-config python-pkgconfig)) - (native-inputs ; for python-pkgconfig - (list pkg-config)) (propagated-inputs - (list python-numpy + (list fenics + python-deprecated + python-matplotlib + python-numpy vtk)) (home-page "https://github.com/marcomusy/vedo") (synopsis @@ -909,8 +917,7 @@ (define-public python-vedo range of functionalities for working with three-dimensional meshes and point clouds. It can also be used to generate high quality two-dimensional renderings such as scatter plots and histograms. -@code{vedo} is based on @code{vtk} and @code{numpy}, with no other -dependencies.") +@code{vedo} is based on @code{vtk} and @code{numpy}.") ;; vedo is released under the Expat license. Included fonts are ;; covered by the OFL license and textures by the CC0 license. ;; The earth images are in the public domain. -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 13:47:01 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 17:47:01 +0000 Received: from localhost ([127.0.0.1]:54621 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhxMz-00040t-D1 for submit@debbugs.gnu.org; Fri, 22 Apr 2022 13:47:01 -0400 Received: from andre.telenet-ops.be ([195.130.132.53]:40736) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhxMw-00040k-Ow for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 13:46:59 -0400 Received: from ptr-bvsjgyhxw7psv60dyze.18120a2.ip6.access.telenet.be ([IPv6:2a02:1811:8c09:9d00:3c5f:2eff:feb0:ba5a]) by andre.telenet-ops.be with bizsmtp id Mtmw2700c4UW6Th01tmx9f; Fri, 22 Apr 2022 19:46:57 +0200 Message-ID: Subject: Re: [bug#54869] [PATCH v2 1/7] gnu: fenics-dolfin: Honor #:tests? flag. From: Maxime Devos To: "Paul A. Patience" , 54869@debbugs.gnu.org Date: Fri, 22 Apr 2022 19:46:52 +0200 In-Reply-To: <20220422115258.63649-2-paul@apatience.com> References: <20220422115258.63649-1-paul@apatience.com> <20220422115258.63649-2-paul@apatience.com> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-NcHmMrdKSbFqkjnL7+V6" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1650649617; bh=QMb1B/8pZab2+sj9lYNI42DL3y5mWAE7GfGFEYDo6vE=; h=Subject:From:To:Date:In-Reply-To:References; b=lISyTIw+oX3oPxIn03djhW8+nQ+gN6M6mgSBblUQamlQlkTpS/zmFNqK9sk5pSopZ GrH/pe1CoutqWc3VpSnc02Lh5Imtw+WJaFICWlJ3OQ9FrFdfNEr5ww24fORRMtFT0F R7PnChOc8nVxmPQ7PAlzTu7NZoJaTgysJBqBVs0AZCX7RzZ5RVXHpRM2o8bQ3cwl88 3BhI4GbCL77pgDKb9yNy3BtFbRN0pWhWgnTFCif9ZR73pJH1e0AW6FqmuaMYVeA0ZO SWp3QJI2dPMHWHHNdArTgcJS2EJIv6BwkpeONg0tQqnmE3ZZJptUb3ES/BMD7tZOai fyS4aW/kpSSbQ== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --=-NcHmMrdKSbFqkjnL7+V6 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: base64 UGF1bCBBLiBQYXRpZW5jZSBzY2hyZWVmIG9wIHZyIDIyLTA0LTIwMjIgb20gMTE6NTMgWyswMDAw XToKPiAtwqDCoMKgwqDCoMKgwqDCoMKgwqDCoMKgwqDCoMKgwqDCoCAoaW52b2tlICJjdGVzdCIg Ii1SIiAiZGVtbyIgIi1SIiAibXBpIikpKSkpKSkKPiArwqDCoMKgwqDCoMKgwqDCoMKgwqAgKGxh bWJkYSogKCM6a2V5IHRlc3RzPyAjOmFsbG93LW90aGVyLWtleXMpCj4gK8KgwqDCoMKgwqDCoMKg wqDCoMKgwqDCoCAod2hlbiB0ZXN0cz8KPiArwqDCoMKgwqDCoMKgwqDCoMKgwqDCoMKgwqDCoCAo YW5kIChpbnZva2UgIm1ha2UiICJ1bml0dGVzdHMiKQo+ICvCoMKgwqDCoMKgwqDCoMKgwqDCoMKg wqDCoMKgwqDCoMKgwqDCoCAoaW52b2tlICJtYWtlIiAiZGVtb3MiKQo+ICvCoMKgwqDCoMKgwqDC oMKgwqDCoMKgwqDCoMKgwqDCoMKgwqDCoCAoaW52b2tlICJjdGVzdCIgIi1SIiAidW5pdHRlc3Rz IikKPiArwqDCoMKgwqDCoMKgwqDCoMKgwqDCoMKgwqDCoMKgwqDCoMKgwqAgKGludm9rZSAiY3Rl c3QiICItUiIgImRlbW8iICItUiIgInNlcmlhbCIpCj4gK8KgwqDCoMKgwqDCoMKgwqDCoMKgwqDC oMKgwqDCoMKgwqDCoMKgIChpbnZva2UgImN0ZXN0IiAiLVIiICJkZW1vIiAiLVIiICJtcGkiKSkp KSkpKSkKClRoZSAnYW5kJyBpcyBwb2ludGxlc3MsIGl0IGNhbiBiZSByZW1vdmVkIC0tLSBJSVVD LCAnaW52b2tlJyB0aHJvd3MKZXhjZXB0aW9ucywgaXQgZG9lc24ndCByZXR1cm4gI2ZhbHNlLiAg QW55d2F5LCBob25vdXJpbmcgIzp0ZXN0cz8gaXMKbmljZSAoZm9yIGNyb3NzLWNvbXBpbGF0aW9u IGFuZCAtLXdpdGhvdXQtdGVzdHM9Li4uKS4KCkdyZWV0aW5ncywKTWF4aW1lLgo= --=-NcHmMrdKSbFqkjnL7+V6 Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYmLqDBccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7kIzAQDYXL4oMKHDy6UmUD9Jy5HVQNer g6grMLZZ/s6/CvcxpAEA6ZFizpKtgtBF+NEolLnhiJvDd2K+ZLvGCBbVllCEFAU= =EAyi -----END PGP SIGNATURE----- --=-NcHmMrdKSbFqkjnL7+V6-- From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 16:25:59 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 20:25:59 +0000 Received: from localhost ([127.0.0.1]:54722 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzqo-00021K-Qa for submit@debbugs.gnu.org; Fri, 22 Apr 2022 16:25:59 -0400 Received: from mail-4323.proton.ch ([185.70.43.23]:24829) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzqn-00020s-7h for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 16:25:57 -0400 Date: Fri, 22 Apr 2022 20:25:48 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650659151; bh=IyRkrJ/iscAMnNHlhxkbRMD6EQdM4AvWh/QPRDsqeJY=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=MVNHe5lDJzAqIoWYgnQQTn6/16xSTWCJcC86LPm7e1wYSDF8dRUdhbeKCwQzhhYGK 0/kU1m8taP54sUm7ftkYb4nzD791gQxIbN57jMGjsv0LJQ1azYbNNKTASLOJvZsjBW 1phC1Z/gzFCOzPFqCZckeJDABxCPXQXBkjYVZkK0SwWhVwiZb8NXp2WMX1HKJyU9fk wjzMmagK31GGYuaAvDNxOg/VWqyaTQdJj6GJlXw8VQY3APgx5rx348mwmyZP8y90nE 7rGB1Xm7N0lLk/rMXRTWoObSXfi+zq0fhaxMBhn5H9jigasB7D5Xvu66/OY16cPqFp lhrjWGpU1+DBg== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v3 2/7] gnu: fenics: Honor #:tests? flag. Message-ID: <20220422202538.106338-3-paul@apatience.com> In-Reply-To: <20220422202538.106338-1-paul@apatience.com> References: <20220422202538.106338-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/simulation.scm (fenics)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. --- gnu/packages/simulation.scm | 23 ++++++++++++----------- 1 file changed, 12 insertions(+), 11 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 757738e627..230ae62826 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -657,17 +657,18 @@ (define-public fenics ;; Restrict OpenBLAS to MPI-only in preference to MPI+OpenMP. (setenv "OPENBLAS_NUM_THREADS" "1"))) (replace 'check - (lambda _ - (with-directory-excursion "test" - ;; Note: The test test_snes_set_from_options() in the file - ;; unit/nls/test_PETScSNES_solver.py fails and is ignored. - ;; Limit the number of jobs to 3 as 500 MiB of memory is us= ed - ;; per process. - (invoke "mpirun" "-np" (number->string - (min 3 (parallel-job-count))) - "python" "-B" "-m" - "pytest" "unit" "--ignore" - "unit/nls/test_PETScSNES_solver.py")))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (with-directory-excursion "test" + ;; Note: The test test_snes_set_from_options() in the fil= e + ;; unit/nls/test_PETScSNES_solver.py fails and is ignored= . + ;; Limit the number of jobs to 3 as 500 MiB of memory is = used + ;; per process. + (invoke "mpirun" "-np" (number->string + (min 3 (parallel-job-count))) + "python" "-B" "-m" + "pytest" "unit" "--ignore" + "unit/nls/test_PETScSNES_solver.py"))))) (add-after 'install 'install-demo-files (lambda* (#:key outputs #:allow-other-keys) (let* ((demos (string-append -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 16:25:59 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 20:25:59 +0000 Received: from localhost ([127.0.0.1]:54724 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzqp-00021N-7c for submit@debbugs.gnu.org; Fri, 22 Apr 2022 16:25:59 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:57630) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzql-00020p-KH for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 16:25:58 -0400 Date: Fri, 22 Apr 2022 20:25:41 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650659148; bh=JAJ0WT2AM9P0dcsieJECtrU7dOkkfgbBsxS5Fyf/Cc0=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:Feedback-ID:From:To: Cc:Date:Subject:Reply-To:Feedback-ID:Message-ID; b=bHatHS+tmXX3FLMfaTXDF7eqeqkSSqsblug2s34tRU3HxIOj8Y6klNq0CpASiR/lX emBD+rDznQ0Cge35ZMh1Bh/tLRKKG/fSeT08fNUDxbipwPPv/I2jJZsXlX8H4S8jmc uRd7W3Td89jtRG1ZI45BMbjOOTFFJ2YtoTQ2+DatgdYXtBT/rm1YLhIOkdN8DQ45FT iC9YqnIUYwTEMztDr6X4WbCb2uGE0Rrmg/InxYTebjgeHVafbHY8Je8yF2+tj7DTGw WeRykl2dEtnPwcKQ7LtjKJCdz5tR9UjwFqSbiUcNRaRIUO4Gu95aivrrM0qsgWjjDc O0wFrPlTZjQhg== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v3 0/7] gnu: python-vedo: Update to 2022.2.0. Message-ID: <20220422202538.106338-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) I've integrated the suggestions of Maxime Devos. Paul A. Patience (7): gnu: fenics-dolfin: Honor #:tests? flag. gnu: fenics: Honor #:tests? flag. gnu: fenics: Fix sanity check. gnu: python-vedo: Honor #:tests? flag. gnu: python-vedo: Remove input labels. gnu: python-vedo: Disable sanity check. gnu: python-vedo: Update to 2022.2.0. gnu/packages/python-science.scm | 55 ++++++++++++++++++++------------- gnu/packages/simulation.scm | 49 +++++++++++++++-------------- 2 files changed, 59 insertions(+), 45 deletions(-) -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 16:26:04 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 20:26:04 +0000 Received: from localhost ([127.0.0.1]:54732 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzqu-00022P-Di for submit@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:04 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:17849) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzqp-00020y-8k for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 16:25:59 -0400 Date: Fri, 22 Apr 2022 20:25:51 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650659153; bh=6Ky8g3IXs8eXHb+nd181R9ZQ1K/ufrz/PJLYqdQU4AE=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=YIZagn1s15p88SH0tGgCc59yM5n+ouNG5a6XxvZvUG64xbg3VO63RMqAZ1kzSDJTO mF9I8camAMbUjR5VkpDGjUuY5NRB+8Jn8E+yR/pXDjFR7BGWZN+SzI1/IEBB4CuweS wzSnSt728PUoEyLMII0/QW3HwVlNqfvIJrK9VPOOCKSzT1+sODc3txuyyxcpTzyiCo +ByqmkqrvvALLbikDaDtbmruhIfh2wBG71Eu176QAJyj6XFJD+wALKnoCVU6fgR0ff Rtv2RLHoHc98+o8SpY+o1Um7j4w6ag+XxzxLsw+srlR1kQ0cSeMvneIH+IhLrxI+Wo DQ7+efnZnAhxQ== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v3 3/7] gnu: fenics: Fix sanity check. Message-ID: <20220422202538.106338-4-paul@apatience.com> In-Reply-To: <20220422202538.106338-1-paul@apatience.com> References: <20220422202538.106338-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/simulation.scm (fenics)[arguments]: Relax pybind11 requirement to appease the sanity check. --- gnu/packages/simulation.scm | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 230ae62826..b15743f747 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -607,6 +607,10 @@ (define-public fenics (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "python/setup.py" + (("pybind11=3D=3D") "pybind11>=3D")))) (add-after 'patch-source-shebangs 'set-paths (lambda _ ;; Define paths to store locations. -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 16:26:05 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 20:26:05 +0000 Received: from localhost ([127.0.0.1]:54734 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzqu-00022T-QO for submit@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:05 -0400 Received: from mail-40136.proton.ch ([185.70.40.136]:33033) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzqn-00020t-90 for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:01 -0400 Date: Fri, 22 Apr 2022 20:25:44 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650659150; bh=cy5N6sEH7Ittwuis31JaSRAb2xyGnHG3FZX/CHIZr8Y=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=HVzjVXdMnsEsQboxPjRNpCz7bli1TNLojqeC/SNsmYnzLuNpQf67dYr+vJJhLkz6z sw0msPN4H2icJIBaCDbVb9pM9i17VvoFXRLiOpgIBnkOLHhPovDtMzYvOO7pPtnT9d uprhJ/pSoHEiedRLLcjwgaAvi9RiBEBsrFh+aAefU5uKRRdqYFLBK3STKtS2LxXRFc 7HvsvUh7Hac6L6BO+TEXCpVLPhGJtnF5XlxTBiCqf6YCQZvZesOXNWMbF11r2Z3P1f giUuFRL0qlprCkjV8Wge6k2cIDD5y4bm4FpXPnLHpbodVGXnKdrZ0a79NusUKpczYN WuBr/gDSk7Zeg== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v3 1/7] gnu: fenics-dolfin: Honor #:tests? flag. Message-ID: <20220422202538.106338-2-paul@apatience.com> In-Reply-To: <20220422202538.106338-1-paul@apatience.com> References: <20220422202538.106338-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.7 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.3 (/) * gnu/packages/simulation.scm (fenics-dolfin)[source]: Remove trailing boolean. [arguments]: Adjust custom 'check' phase to honor the #:tests? flag. While here, remove trailing booleans. --- gnu/packages/simulation.scm | 22 ++++++++++------------ 1 file changed, 10 insertions(+), 12 deletions(-) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 3f2d8e136d..757738e627 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -448,8 +448,7 @@ (define-public fenics-dolfin ;; Specify directory to find the header file. (("(^set\\(CATCH_INCLUDE_DIR ).*(/catch\\))" _ front back) (string-append front - "$ENV{CATCH_DIR}/include" back "\n"))) - #t)))) + "$ENV{CATCH_DIR}/include" back "\n"))))))) (build-system cmake-build-system) (inputs `(("blas" ,openblas) @@ -494,8 +493,7 @@ (define-public fenics-dolfin (setenv "SLEPC_DIR" (assoc-ref %build-inputs "slepc")) (setenv "SCOTCH_DIR" (assoc-ref %build-inputs "scotch")) (setenv "SUNDIALS_DIR" (assoc-ref %build-inputs "sundials")) - (setenv "UMFPACK_DIR" (assoc-ref %build-inputs "suitesparse")= ) - #t)) + (setenv "UMFPACK_DIR" (assoc-ref %build-inputs "suitesparse")= ))) (add-before 'check 'pre-check (lambda _ ;; The Dolfin repository uses git-lfs, whereby web links are @@ -546,15 +544,15 @@ (define-public fenics-dolfin "demo_mesh-quality_serial " "demo_mesh-quality_mpi " "demo_multimesh-stokes_serial " - ")\n") port))) - #t)) + ")\n") port))))) (replace 'check - (lambda _ - (and (invoke "make" "unittests") - (invoke "make" "demos") - (invoke "ctest" "-R" "unittests") - (invoke "ctest" "-R" "demo" "-R" "serial") - (invoke "ctest" "-R" "demo" "-R" "mpi"))))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "make" "unittests") + (invoke "make" "demos") + (invoke "ctest" "-R" "unittests") + (invoke "ctest" "-R" "demo" "-R" "serial") + (invoke "ctest" "-R" "demo" "-R" "mpi"))))))) (home-page "https://bitbucket.org/fenics-project/dolfin/") (synopsis "Problem solving environment for differential equations") (description -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 16:26:09 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 20:26:09 +0000 Received: from localhost ([127.0.0.1]:54736 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzqz-00022m-6R for submit@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:09 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:23428) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzqs-000213-KM for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:02 -0400 Date: Fri, 22 Apr 2022 20:25:54 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650659157; bh=Dwarics/nuuxaWFkfV7M5LbVN5sNoPDr2R7MwfVZUic=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=pJCrExw5k43qkaI15tU9fhr7PD+q7dmNvt3dWIN2osa/X9h8O5ou+LS6u2Pw/yM/R Id0KDb8+35WcMp3CvLoGftpEsdefvQStLmALkdFVt1TR780VlNbhpXt8gC+hHyvy0m U5ZtcgULejwa/jvZE8nFEsQD54N9P2zFAfMWafWq9R6DjZWfXhBDAbeN8wQzDyEgw+ o+OXno07GqCOmTcQi3QNuh16BLyAaBNfsbIOALsooXZVEc5bUY4S+vdgnSJ/36gDCI 8sYiUR4uLnJnHNW/Or3ZwCLbJe5NBo7pGdbpUOHGqcMBbW4e+fjNMbEOBqnp5Pa9nE x3/uA0GYpSTfA== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v3 4/7] gnu: python-vedo: Honor #:tests? flag. Message-ID: <20220422202538.106338-5-paul@apatience.com> In-Reply-To: <20220422202538.106338-1-paul@apatience.com> References: <20220422202538.106338-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-vedo)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. Also remove its trailing boolean. --- gnu/packages/python-science.scm | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.= scm index 07d713e013..4538904b68 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -876,15 +876,15 @@ (define-public python-vedo (add-after 'build 'mpi-setup ,%openmpi-setup) (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (setenv "HOME" (getcwd)) - (add-installed-pythonpath inputs outputs) - (with-directory-excursion "tests" - (for-each (lambda (dir) - (with-directory-excursion dir - (invoke "./run_all.sh"))) - '("common" "dolfin"))) - #t))))) + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (setenv "HOME" (getcwd)) + (add-installed-pythonpath inputs outputs) + (with-directory-excursion "tests" + (for-each (lambda (dir) + (with-directory-excursion dir + (invoke "./run_all.sh"))) + '("common" "dolfin"))))))))) (inputs ; for the check phase `(("dolfin" ,fenics) ("pkgconfig" ,python-pkgconfig) -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 16:26:13 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 20:26:14 +0000 Received: from localhost ([127.0.0.1]:54740 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzr3-000237-FB for submit@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:13 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:50340) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzr1-00022g-4E for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:11 -0400 Date: Fri, 22 Apr 2022 20:25:57 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650659165; bh=RMA0eOqbrT54fixWwH1NksStjUAMXMEEGd8mFls+2xQ=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=GkUe6L2rQeye3qCscbcrB0ES4n7HwcFzss/h0eV4rRnEuXTQlfWR2cVjO1QCO0Rya XFoe0nWVoL+iWevsnCo+MW7AI+7TFyEWyTQuxIY0rhYaDhEBnVRtVCSEh/rhrApM2K 7Vx5g3uyqd+xntOHw8kekG8HPkWyfq7AUuAqBgBk5B1YOJ95sDjiSaOz6u911ir1j0 EcuTBbGaOTUXjHTuSsEuSC7oRu6CjwhVPKVhP9WDE6gX/BjRpYOiLCsemm+s9fAbRh ULEWQ7Xhd7k8Vl9pjLnzYJhTIq45uQ4+sMDKcSUXk43Opa1C0CqFZIi8qbAQ6P69W+ 0xlmfnmvigVKg== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v3 5/7] gnu: python-vedo: Remove input labels. Message-ID: <20220422202538.106338-6-paul@apatience.com> In-Reply-To: <20220422202538.106338-1-paul@apatience.com> References: <20220422202538.106338-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-vedo)[inputs]: Remove labels and sort the inputs. [propagated-inputs]: Remove labels. --- gnu/packages/python-science.scm | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.= scm index 4538904b68..3afaa0efc2 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -886,14 +886,14 @@ (define-public python-vedo (invoke "./run_all.sh"))) '("common" "dolfin"))))))))) (inputs ; for the check phase - `(("dolfin" ,fenics) - ("pkgconfig" ,python-pkgconfig) - ("matplotlib" ,python-matplotlib))) + (list fenics + python-matplotlib + python-pkgconfig)) (native-inputs ; for python-pkgconfig (list pkg-config)) (propagated-inputs - `(("numpy" ,python-numpy) - ("vtk" ,vtk))) + (list python-numpy + vtk)) (home-page "https://github.com/marcomusy/vedo") (synopsis "Analysis and visualization of 3D objects and point clouds") -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 16:26:16 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 20:26:16 +0000 Received: from localhost ([127.0.0.1]:54744 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzr5-00023N-Ri for submit@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:16 -0400 Received: from mail-4323.proton.ch ([185.70.43.23]:26483) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzr3-00022j-E3 for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:13 -0400 Date: Fri, 22 Apr 2022 20:26:04 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650659167; bh=lBCMndCQfxChZT7mt+/i3T9GxDaaJkAhWgGYfa7+2ww=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=q+hGHJXxRmcNSG/9aVSBM3tTpwKVUt4Khj3PkZ8zQAbKROaRt0TyUE+nfIZCDRZU9 tPCfG+HJ8lNHsQv87wZn55RewZA8i7YAjUbcGk09vPIPfgB3uKeSwTGqXVm6F/l5O+ 9vSqBv9t+O+UCy4OKPKXHxBF2s/Lhmv4RnSja1DjDt/npAxKFy6oQBr6mBz8te6Kvp EgQ/NXb3zRp33RiSEeBf3l4pX2LADo7QzDyYKP7JYkS+TKU/qQNiPEg1N50M4geF9o 6YqPlqkpYBjarMM+XzHZjceM9saC9KMb4Z6yDobaLGeeAXJhAVGv67JHII7MKHf03L 7Dd10ougkajkg== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v3 6/7] gnu: python-vedo: Disable sanity check. Message-ID: <20220422202538.106338-7-paul@apatience.com> In-Reply-To: <20220422202538.106338-1-paul@apatience.com> References: <20220422202538.106338-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-vedo)[arguments]: Disable sanity check. --- gnu/packages/python-science.scm | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.= scm index 3afaa0efc2..676ca6474e 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -884,7 +884,11 @@ (define-public python-vedo (for-each (lambda (dir) (with-directory-excursion dir (invoke "./run_all.sh"))) - '("common" "dolfin"))))))))) + '("common" "dolfin")))))) + ;; Disable the sanity check, which fails with the following error= : + ;; + ;; ...checking requirements: ERROR: vedo=3D=3D2021.0.3 Distribu= tionNotFound(Requirement.parse('vtk'), {'vedo'}) + (delete 'sanity-check)))) (inputs ; for the check phase (list fenics python-matplotlib -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 22 16:26:22 2022 Received: (at 54869) by debbugs.gnu.org; 22 Apr 2022 20:26:22 +0000 Received: from localhost ([127.0.0.1]:54748 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzrC-00023j-2Q for submit@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:22 -0400 Received: from mail-4323.proton.ch ([185.70.43.23]:35321) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nhzr9-00023J-5g for 54869@debbugs.gnu.org; Fri, 22 Apr 2022 16:26:19 -0400 Date: Fri, 22 Apr 2022 20:26:08 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650659173; bh=CdadgJgTgdZLYvW9etF16obfhdI55/j0wBL6noUfDsY=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=aPg7WjU8kPKHt/p3FyY5Jk2xIRPfzUs2wM97Tnb6d7NqUWmL0WtHNdnlyPFdRVPGw y3pF109a7e/CpPehyut57IQqnfP9ChjUr7UAtvBsLNwOncSB2hsXuKFJvJUgZO7M8I 1zVgAWMHt+OHE7tUjUw3odRZiNpAJS6Zp0EH7A+MpQV41oFplSC+5ywFzGL7dHIrGF S6sYqdN97IAiGXpbHD+Y9rkEv8V5lwIvTZjtrUYbrScrLJCEi0eueUbk0DkCXYLpRF +O1hPZbIPSeMFpaaS32R+Z4KLnEWppaO4SxwZkTkn892CGM2wopWe7cM2DjJngthjr DI9XTDg/Ac8Pg== To: 54869@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH v3 7/7] gnu: python-vedo: Update to 2022.2.0. Message-ID: <20220422202538.106338-8-paul@apatience.com> In-Reply-To: <20220422202538.106338-1-paul@apatience.com> References: <20220422202538.106338-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869 Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/python-science.scm (python-vedo): Update to 2022.2.0. [arguments]: Add 'fix-tests' phase. [inputs]: Move fenics and python-matplotlib to propagated-inputs. Move python-pkgconfig from here... [native-inputs]: ...to here. [propagated-inputs]: Add python-deprecated (and fenics and python-matplotlib). [description]: Make description more accurate. --- gnu/packages/python-science.scm | 31 +++++++++++++++++++------------ 1 file changed, 19 insertions(+), 12 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.= scm index 676ca6474e..ab307e31af 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -17,6 +17,7 @@ ;;; Copyright =C2=A9 2021 Felix Gruber ;;; Copyright =C2=A9 2022 Malte Frank Gerdes ;;; Copyright =C2=A9 2022 Guillaume Le Vaillant +;;; Copyright =C2=A9 2022 Paul A. Patience ;;; ;;; This file is part of GNU Guix. ;;; @@ -858,21 +859,28 @@ (define-public python-upsetplot (define-public python-vedo (package (name "python-vedo") - (version "2021.0.3") + (version "2022.2.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/marcomusy/vedo") - (commit version))) + (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 - "18i3ajh5jzhpc86di15lwh4jv97jhm627ii877sa4yhv6abzjfpn")))) + "1hhv4xc4bphhd1zrnf7r6fpf65xvkdqmb1lh51qg1xpv91h2az0h")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-tests + ;; These tests require online data. + (lambda _ + (substitute* "tests/common/test_actors.py" + (("^st =3D .*") "") + (("^assert isinstance\\(st\\.GetTexture\\(\\), .*") "")) + (delete-file "tests/common/test_pyplot.py"))) (add-after 'build 'mpi-setup ,%openmpi-setup) (replace 'check @@ -887,16 +895,16 @@ (define-public python-vedo '("common" "dolfin")))))) ;; Disable the sanity check, which fails with the following error= : ;; - ;; ...checking requirements: ERROR: vedo=3D=3D2021.0.3 Distribu= tionNotFound(Requirement.parse('vtk'), {'vedo'}) + ;; ...checking requirements: ERROR: vedo=3D=3D2022.2.0 Distribu= tionNotFound(Requirement.parse('vtk<9.1.0'), {'vedo'}) (delete 'sanity-check)))) - (inputs ; for the check phase - (list fenics - python-matplotlib + (native-inputs + (list pkg-config python-pkgconfig)) - (native-inputs ; for python-pkgconfig - (list pkg-config)) (propagated-inputs - (list python-numpy + (list fenics + python-deprecated + python-matplotlib + python-numpy vtk)) (home-page "https://github.com/marcomusy/vedo") (synopsis @@ -907,8 +915,7 @@ (define-public python-vedo range of functionalities for working with three-dimensional meshes and point clouds. It can also be used to generate high quality two-dimensional renderings such as scatter plots and histograms. -@code{vedo} is based on @code{vtk} and @code{numpy}, with no other -dependencies.") +@code{vedo} is based on @code{vtk} and @code{numpy}.") ;; vedo is released under the Expat license. Included fonts are ;; covered by the OFL license and textures by the CC0 license. ;; The earth images are in the public domain. -- 2.35.1 From debbugs-submit-bounces@debbugs.gnu.org Fri May 06 09:11:47 2022 Received: (at 54869-done) by debbugs.gnu.org; 6 May 2022 13:11:47 +0000 Received: from localhost ([127.0.0.1]:47473 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nmxkJ-0004W5-7p for submit@debbugs.gnu.org; Fri, 06 May 2022 09:11:47 -0400 Received: from eggs.gnu.org ([209.51.188.92]:32868) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nmxkF-0004Vh-IZ; Fri, 06 May 2022 09:11:43 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:44818) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nmxkA-0007QZ-B9; Fri, 06 May 2022 09:11:38 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:In-Reply-To:Date:References:Subject:To: From; bh=BumthhIKmaYMWWO7Z2YbhXk4oRa+6xkHsz5MqphorCQ=; b=SF2dP9wIyMDdbI7iO+LG Q9I/+JrFIrS5wOmmeInSfooLycMrI9BQnNe0CCI+q44vGnowEZTs8XXt7rW74GJfP4iba/QbAb1T0 B/d9OxhSsaL5NY2JLr8VqEp19S8Zxkjr8RP3UVLgLTJ07mOjPfA+Q1H5J82KjswO6F1bIxPCvsraI xKjzcZaG5vqCAuK3kpi177/m7v6Unx54Y9ji2dOgBpebDbQiKHu/kbTPW3tuvMP7ShXtZ1A6e2G5/ bEuEmTAxZmON0A60pAF2GGESTWXVonzumwM12H15Sx88ZpnCwr+tREZR9p1Juppl9CcijeP0rjYyW EPZOeShavOZVEg==; Received: from [193.50.110.244] (port=52664 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nmxk7-0004Qy-O0; Fri, 06 May 2022 09:11:38 -0400 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: "Paul A. Patience" Subject: Re: bug#54874: [PATCH 4/5] gnu: python-vedo: Remove input labels. References: <20220412012143.30573-1-paul@apatience.com> <20220422202538.106338-1-paul@apatience.com> Date: Fri, 06 May 2022 15:11:33 +0200 In-Reply-To: <20220422202538.106338-1-paul@apatience.com> (Paul A. Patience's message of "Fri, 22 Apr 2022 20:25:41 +0000") Message-ID: <878rre4xh6.fsf_-_@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 54869-done Cc: 54874-done@debbugs.gnu.org, 54869-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hi Paul, "Paul A. Patience" skribis: > gnu: fenics-dolfin: Honor #:tests? flag. > gnu: fenics: Honor #:tests? flag. > gnu: fenics: Fix sanity check. > gnu: python-vedo: Honor #:tests? flag. > gnu: python-vedo: Remove input labels. > gnu: python-vedo: Disable sanity check. > gnu: python-vedo: Update to 2022.2.0. Finally applied. Thank you, and thanks Maxime for reviewing! Ludo=E2=80=99. From debbugs-submit-bounces@debbugs.gnu.org Fri May 06 09:36:35 2022 Received: (at 54869-done) by debbugs.gnu.org; 6 May 2022 13:36:35 +0000 Received: from localhost ([127.0.0.1]:47507 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nmy8I-0007TV-Rp for submit@debbugs.gnu.org; Fri, 06 May 2022 09:36:35 -0400 Received: from albert.telenet-ops.be ([195.130.137.90]:50810) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nmy8G-0007TD-H5 for 54869-done@debbugs.gnu.org; Fri, 06 May 2022 09:36:33 -0400 Received: from ptr-bvsjgyhxw7psv60dyze.18120a2.ip6.access.telenet.be ([IPv6:2a02:1811:8c09:9d00:3c5f:2eff:feb0:ba5a]) by albert.telenet-ops.be with bizsmtp id TRcW270094UW6Th06RcWFR; Fri, 06 May 2022 15:36:30 +0200 Message-ID: <848c6b4baaf973053fcbebdb0bfd4a551141266b.camel@telenet.be> Subject: Re: [bug#54874] [PATCH 4/5] gnu: python-vedo: Remove input labels. From: Maxime Devos To: Ludovic =?ISO-8859-1?Q?Court=E8s?= , "Paul A. Patience" Date: Fri, 06 May 2022 15:36:25 +0200 In-Reply-To: <878rre4xh6.fsf_-_@gnu.org> References: <20220412012143.30573-1-paul@apatience.com> <20220422202538.106338-1-paul@apatience.com> <878rre4xh6.fsf_-_@gnu.org> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-vHYRm3SypPXWeI2x0Zhs" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1651844190; bh=1K2Ds0qk4FNW5q3NVs0EiPFwY5JAH1Do4YdGFVrDogw=; h=Subject:From:To:Cc:Date:In-Reply-To:References; b=JUdOP64Pgic9ReNmZ/vs33/d84vdgqz072Y57g/6juv+eBViWt2yVBdw9ddq4Hqi+ 3PhvDuzl4gxcwdQJ7PFB0m/kQtczrZZqVjx9TmxxU7PRCzezg1m93myDascxJhbzNj ordsn+UYwkbVwFX8eu6Lk47ksaI+mcLrsqQpOWAY41F+oErpY3rDMq3pXtsUXdfhLO 3HLvErn4oJuBlwyFvqlZjyozhQUrFOid0lnkE0ekRGOe7VJKf3dMlbq54N9sjKqsgr HmT6rSBcJ8UQJGEbVQkJc9EsCV7wOpEaPkLdMjxVlYOqPaVBgIzGYiuFPLytsFX3++ cvYrmBKlect3A== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 54869-done Cc: 54874-done@debbugs.gnu.org, 54869-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --=-vHYRm3SypPXWeI2x0Zhs Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Ludovic Court=C3=A8s schreef op vr 06-05-2022 om 15:11 [+0200]: > Finally applied.=C2=A0 Thank you, and thanks Maxime for reviewing! TBC I only looked rather superficially at things, I haven't build any of the packages myself or looked into the source code of the packages. Greetings, Maxime. --=-vHYRm3SypPXWeI2x0Zhs Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYnUkWRccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7nqeAP9eDLVOKdzpZ7MV99qnekvrr27l BNEjxIqriAnKO7L4AwEAshWHFTehxvdu/L+3K8KfadoqPl+RaXD+smPHubRVuwk= =wxXO -----END PGP SIGNATURE----- --=-vHYRm3SypPXWeI2x0Zhs-- From unknown Sat Sep 20 23:53:06 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 04 Jun 2022 11:24:08 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator