GNU bug report logs - #54635
[PATCH 0/5] Add wfmash

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From: Arun Isaac <arunisaac <at> systemreboot.net>
To: 54635 <at> debbugs.gnu.org
Cc: Arun Isaac <arunisaac <at> systemreboot.net>, Efraim Flashner <efraim <at> flashner.co.il>
Subject: [bug#54635] [PATCH 2/5] gnu: htslib: Add bzip2 and xz to inputs.
Date: Wed, 30 Mar 2022 14:53:10 +0530

htslib links to libbz2 from bzip2 and liblzma from xz. Therefore, bzip2 and xz
should be listed in inputs even though they are already present implicitly in
native-inputs. Else, cross-compilation will fail.

* gnu/packages/bioinformatics.scm (htslib)[inputs]: Add bzip2 and xz.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4e1028b3ce..2f6f3efb66 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8,7 +8,7 @@
 ;;; Copyright © 2016, 2020, 2022 Marius Bakke <marius <at> gnu.org>
 ;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo <at> gmail.com>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me <at> tobias.gr>
-;;; Copyright © 2017, 2021 Arun Isaac <arunisaac <at> systemreboot.net>
+;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac <at> systemreboot.net>
 ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua <at> nextjournal.com>
 ;;; Copyright © 2018 Gábor Boskovits <boskovits <at> gmail.com>
 ;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
@@ -4788,7 +4788,7 @@ (define-public htslib
                            "--enable-libcurl"
                            "--enable-s3")))
     (inputs
-     (list curl openssl))
+     (list bzip2 curl openssl xz))
     ;; This is referred to in the pkg-config file as a required library.
     (propagated-inputs
      (list zlib))
-- 
2.34.0

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