GNU bug report logs - #54535
[PATCH] gnu: r-signac: Update to 1.6.0.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#54535: closed ([PATCH] gnu: r-signac: Update to 1.6.0.)
Date: Tue, 29 Mar 2022 15:47:01 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#54535: [PATCH] gnu: r-signac: Update to 1.6.0.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 54535 <at> debbugs.gnu.org.

-- 
54535: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=54535
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 54535-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: r-signac: Update to 1.6.0.
Date: Tue, 29 Mar 2022 17:46:07 +0200

Thanks, I pushed it with a corrected commit message.

-- 
Ricardo

[Message part 3 (message/rfc822, inline)]

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: r-signac: Update to 1.6.0.
Date: Wed, 23 Mar 2022 11:24:08 +0100

* gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0.
    [propagated-inputs]: Remove AnnotationFilter, BiocGenerics,
Biostrings, biovizBase and ggbio.
    [propagated-inputs]: Add qlcMatrix and tidyselect.
---
 gnu/packages/bioinformatics.scm | 19 ++++++++-----------
 1 file changed, 8 insertions(+), 11 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ada5965e5f..67793904f0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15275,11 +15275,11 @@ (define-public ensembl-vep
       (license license:asl2.0))))
 
 (define-public r-signac
-  (let ((commit "e0512d348adeda4a3f23a2e8f56d1fe09840e03c")
-        (revision "1"))
+  (let ((commit "458e647b503c3472b0b98c0aeca934f452e039ee")
+        (revision "2"))
     (package
       (name "r-signac")
-      (version (git-version "1.1.1" revision commit))
+      (version (git-version "1.6.0" revision commit))
       (source
        (origin
          (method git-fetch)
@@ -15288,16 +15288,12 @@ (define-public r-signac
                (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32
-           "1yihhrv7zs87ax61la1nb4y12lg3knraw4b20k5digbcwm8488lb"))))
+          (base32 "1hgwpgighkvfkai80n4d2252s4sdpa4faag4ncdiylicl5wa7lbj"))))
       (properties `((upstream-name . "Signac")))
       (build-system r-build-system)
       (inputs (list zlib))
       (propagated-inputs
-       (list r-annotationfilter
-             r-biocgenerics
-             r-biostrings
-             r-biovizbase
+       (list r-biocgenerics
              r-data-table
              r-dplyr
              r-fastmatch
@@ -15305,7 +15301,6 @@ (define-public r-signac
              r-future-apply
              r-genomeinfodb
              r-genomicranges
-             r-ggbio
              r-ggforce
              r-ggplot2
              r-ggrepel
@@ -15316,6 +15311,7 @@ (define-public r-signac
              r-matrix
              r-patchwork
              r-pbapply
+             r-qlcmatrix
              r-rcpp
              r-rcpproll
              r-rsamtools
@@ -15324,7 +15320,8 @@ (define-public r-signac
              r-seurat
              r-seuratobject
              r-stringi
-             r-tidyr))
+             r-tidyr
+             r-tidyselect))
       (home-page "https://github.com/timoast/signac/")
       (synopsis "Analysis of single-cell chromatin data")
       (description
-- 
2.34.0

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