GNU bug report logs - #54303
[PATCH 0/6] Some bioinfo R packages.

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From: zimoun <zimon.toutoune <at> gmail.com>
To: 54303 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [bug#54303] [PATCH 6/6] gnu: Add r-diffcyt.
Date: Tue,  8 Mar 2022 20:06:17 +0100

* gnu/packages/bioconductor.scm (r-diffcyt): New variable.
---
 gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8fcd43f27f..6c5de0542c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2966,6 +2966,44 @@ (define-public r-dexseq
 exploration of the results.")
     (license license:gpl3+)))
 
+(define-public r-diffcyt
+  (package
+    (name "r-diffcyt")
+    (version "1.14.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (bioconductor-uri "diffcyt" version))
+        (sha256
+          (base32 "1yc9mlc0ifb7h6rzskq97bsdq1kwdp5qq9l9mciwyxf6yjkmv5ni"))))
+    (properties `((upstream-name . "diffcyt")))
+    (build-system r-build-system)
+    (propagated-inputs
+      (list r-circlize
+            r-complexheatmap
+            r-dplyr
+            r-edger
+            r-flowcore
+            r-flowsom
+            r-limma
+            r-lme4
+            r-magrittr
+            r-multcomp
+            r-reshape2
+            r-s4vectors
+            r-summarizedexperiment
+            r-tidyr))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/lmweber/diffcyt")
+    (synopsis "Differential discovery in high-dimensional cytometry")
+    (description
+      "Statistical methods for differential discovery analyses in
+high-dimensional cytometry data (including flow cytometry, mass cytometry or
+CyTOF, and oligonucleotide-tagged cytometry), based on a combination of
+high-resolution clustering and empirical Bayes moderated tests adapted from
+transcriptomics.")
+    (license license:expat)))
+
 (define-public r-dirichletmultinomial
   (package
     (name "r-dirichletmultinomial")
-- 
2.34.0

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