GNU bug report logs - #52906
python-biopython conflicts with python-numpy

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Message #11 received at 52906 <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: zimoun <zimon.toutoune <at> gmail.com>
Cc: debbugs-submit <at> debbugs.gnu.org, 52906 <at> debbugs.gnu.org
Subject: Re: bug#52906: python-biopython conflicts with python-numpy
Date: Fri, 31 Dec 2021 11:14:22 +0100

zimoun <zimon.toutoune <at> gmail.com> writes:

> Hi,
>
> Using 7022eb6, the package ’python-biopython’ propagates
> ’python-numpy’, i.e., python-numpy <at> 1.20.

Back then we reverted to numpy 1.20.x as the default because of numba,
which did not work with 1.21.  I’m now upgrading numba (and llvmlite) to
a more recent release candidate, which should bring compatibility with
numpy 1.21.

If that works we’ll make python-numpy-next the new python-numpy.

Your patch is an acceptable workaround.  Arguably this should have been
done when I made numpy 1.20 the default on the core-updates-frozen
branch.  I’ll apply your patch later today unless the switch to numpy
1.21 as the default is successful.

-- 
Ricardo

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