From unknown Sat Jun 21 03:30:44 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#52906 <52906@debbugs.gnu.org> To: bug#52906 <52906@debbugs.gnu.org> Subject: Status: python-biopython conflicts with python-numpy Reply-To: bug#52906 <52906@debbugs.gnu.org> Date: Sat, 21 Jun 2025 10:30:44 +0000 retitle 52906 python-biopython conflicts with python-numpy reassign 52906 guix submitter 52906 zimoun severity 52906 normal thanks From debbugs-submit-bounces@debbugs.gnu.org Thu Dec 30 16:23:41 2021 Received: (at submit) by debbugs.gnu.org; 30 Dec 2021 21:23:41 +0000 Received: from localhost ([127.0.0.1]:54720 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n32tg-0003Bp-OA for submit@debbugs.gnu.org; Thu, 30 Dec 2021 16:23:41 -0500 Received: from lists.gnu.org ([209.51.188.17]:33326) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n32te-0003Bh-Hz for submit@debbugs.gnu.org; Thu, 30 Dec 2021 16:23:39 -0500 Received: from eggs.gnu.org ([209.51.188.92]:60934) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1n32te-0000cx-CC for bug-guix@gnu.org; Thu, 30 Dec 2021 16:23:38 -0500 Received: from [2a00:1450:4864:20::433] (port=35356 helo=mail-wr1-x433.google.com) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1n32tc-0008AX-Fr for bug-guix@gnu.org; Thu, 30 Dec 2021 16:23:37 -0500 Received: by mail-wr1-x433.google.com with SMTP id j18so52693479wrd.2 for ; Thu, 30 Dec 2021 13:23:36 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:subject:date:message-id:mime-version; bh=/P9GwQT4NHOtcyuVg6o7fBximpKv4TnSznJRvT+HzWw=; b=RiPVuVwuWhV+Xiw2y4gWwfCYctdkmVNlD29SvQD13XuBGKVC2H6RT5jh14wvgNt8ke gScwga8kUDE9oFaFQh1wU7ZIrEfHYGijtX/nyhs8M91Xb/ueEpkopOjiucILWX7F3hHJ xH6DybQEwDs44x2Pc1UbBImAvEYy+C46ffoZiQOOzQa3ceJ9WLg7PZxvUFGORMjMCo77 mfubv6jEV7exEJXceJBwBxvFQMf3HATnBvxj+5FwZx4DCFKc0uVN0IeJu3SzqN5fvRlf W3d2Ub44BuR6fOZi7MDqhuvuJ9h1kWDDCsth8E3Q77RQhD1GQQZ6vZ4z0McBEMm6+VGu AfcA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:subject:date:message-id:mime-version; bh=/P9GwQT4NHOtcyuVg6o7fBximpKv4TnSznJRvT+HzWw=; b=NQ8LaTMx+cO9JcuQeGQ5hrl94+CcdIPVMClmRgotvblg3SKW3ZR2vQZaZi2qePsxdn zTEWQRPew2DbqWbH62ad/1z7Rds2JrXVP3u8FwuU7BAqb1pvqJO9RsKV57zIi3Gb50yN nlBjlzcAUJviBGtfz3Hzlv1Pl2xM0lcxZa72cmd3OpKoU0gpAMe5BccJKyfKZLgaVzc/ AoT3BCYyJLVNMI/hSrjMhpu2BoMnkEWij+9NBcYof/FHJRc7YOBrLv535t2MEAbEmOHg VKBHRClrTgQL/Cz47frfiwwgu0lR8pVGnd8nnTPAo9w251m/mHimbCzPeRjI0/5OmGzI T32g== X-Gm-Message-State: AOAM533UT5MAJA1X6E1g15vBnIOrTkutDGlq58FhbDUHl4navqNw1bAy 8kUGL3MkuNA/QJkGPVu/ItsapAGt8AE= X-Google-Smtp-Source: ABdhPJxXKK/E6Unf8kkbwHUaiRp3eSBqS/zIObs1Okxjl5Ns2z4cItP4wlOeQLHRKxtamtn/THFEfA== X-Received: by 2002:a05:6000:120c:: with SMTP id e12mr26729328wrx.6.1640899414896; Thu, 30 Dec 2021 13:23:34 -0800 (PST) Received: from lili ([2a01:e0a:59b:9120:65d2:2476:f637:db1e]) by smtp.gmail.com with ESMTPSA id k31sm25062038wms.21.2021.12.30.13.23.34 for (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 30 Dec 2021 13:23:34 -0800 (PST) From: zimoun To: Bug Guix Subject: python-biopython conflicts with python-numpy X-Debbugs-CC: Ricardo Wurmus Date: Thu, 30 Dec 2021 22:13:48 +0100 Message-ID: <86o84xpzhv.fsf@gmail.com> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="=-=-=" X-Host-Lookup-Failed: Reverse DNS lookup failed for 2a00:1450:4864:20::433 (failed) Received-SPF: pass client-ip=2a00:1450:4864:20::433; envelope-from=zimon.toutoune@gmail.com; helo=mail-wr1-x433.google.com X-Spam_score_int: 6 X-Spam_score: 0.6 X-Spam_bar: / X-Spam_report: (0.6 / 5.0 requ) DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, RDNS_NONE=0.793, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=no autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Hi, Using 7022eb6, the package =E2=80=99python-biopython=E2=80=99 propagates =E2=80=99python-numpy=E2=80=99, i.e., python-numpy@1.20.3. However, because Guix installs by default the last version and: --8<---------------cut here---------------start------------->8--- $ guix package -A | grep 'python-numpy ' | cut -f1,2 python-numpy 1.21.3=20=20=20=20=20=20=20=20=20=20=20=20=20=20 python-numpy 1.20.3=20=20=20=20=20=20=20=20=20=20=20=20=20=20 --8<---------------cut here---------------end--------------->8--- then this manifests.scm leads to an error, --8<---------------cut here---------------start------------->8--- $ cat /tmp/manifest.scm (specifications->manifest (list "python-numpy" "python-biopython")) $ guix package -m /tmp/manifest.scm -p /tmp/fail The following packages will be installed: python-biopython 1.76 python-numpy 1.21.3 guix package: error: profile contains conflicting entries for python-numpy guix package: error: first entry: python-numpy@1.21.3 /gnu/store/ggrkk9l6= 7fjn1cj7alr8vx40xv08a6h0-python-numpy-1.21.3 guix package: error: second entry: python-numpy@1.20.3 /gnu/store/wgsmkn6= 8q8h178sqc7ywjcdr330z9rb6-python-numpy-1.20.3 guix package: error: ... propagated from python-biopython@1.76 hint: Try upgrading both `python-numpy' and `python-biopython', or remove o= ne of them from the profile. --8<---------------cut here---------------end--------------->8--- which is annoying. I propose to refer as name =E2=80=9Cpython-numpy=E2=80=9D the symbol python= -numpy which leads to a consistent scientific Python stack. And to refer as name =E2=80=9Cpython-numpy-next=E2=80=9D the symbol python-numpy-next. For instance, it is already the case for emacs-next or for the Bioconductor package r-cistopic. Doing so, adventurous people can use python-numpy-next (or recompile all the scientific Python stack using it), or update it directly on master (for testing say) without going to a core-update cycle. WDYT? Attached a proposed patch. Cheers, simon --=-=-= Content-Type: text/x-diff Content-Disposition: inline; filename=0001-gnu-Rename-last-python-numpy-as-python-numpy-next.patch Content-Description: patch.patch >From 962d942ffcba7893ab15c30dc602e51462d9b09a Mon Sep 17 00:00:00 2001 From: zimoun Date: Thu, 30 Dec 2021 22:04:49 +0100 Subject: [PATCH] gnu: Rename last 'python-numpy' as 'python-numpy-next'. * gnu/packages/python-xyz.scm (python-numpy-next): Rename. --- gnu/packages/python-xyz.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 7ca0b1668d..047bb4cbb8 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -5366,11 +5366,9 @@ (define-public python2-cython "")) #t))))))))) -;; NOTE: when upgrading numpy please make sure that python-pandas and -;; python-scipy still build, as these three packages are often used together. (define-public python-numpy-next (package - (name "python-numpy") + (name "python-numpy-next") (version "1.21.3") (source (origin @@ -5481,6 +5479,8 @@ (define-public python-numpy-1.20 (substitute-keyword-arguments (package-arguments python-numpy-next) ((#:tests? _ #t) #f))))) +;; NOTE: when upgrading numpy please make sure that python-pandas and +;; python-scipy still build, as these three packages are often used together. (define-public python-numpy python-numpy-1.20) ;; NOTE: NumPy 1.8 is packaged only for Python 2 because it is of base-commit: 002442b2209b0953dd209e6219696a8758ceceb2 -- 2.34.0 --=-=-=-- From debbugs-submit-bounces@debbugs.gnu.org Thu Dec 30 18:55:31 2021 Received: (at 52906) by debbugs.gnu.org; 30 Dec 2021 23:55:31 +0000 Received: from localhost ([127.0.0.1]:54788 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n35Gd-0001da-G5 for submit@debbugs.gnu.org; Thu, 30 Dec 2021 18:55:31 -0500 Received: from wout4-smtp.messagingengine.com ([64.147.123.20]:34825) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n35Gb-0001dG-0Q for 52906@debbugs.gnu.org; Thu, 30 Dec 2021 18:55:30 -0500 Received: from compute4.internal (compute4.nyi.internal [10.202.2.44]) by mailout.west.internal (Postfix) with ESMTP id E63BC3200E31; Thu, 30 Dec 2021 18:55:21 -0500 (EST) Received: from mailfrontend2 ([10.202.2.163]) by compute4.internal (MEProxy); Thu, 30 Dec 2021 18:55:22 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=famulari.name; h=date:from:to:cc:subject:message-id:references:mime-version :content-type:content-transfer-encoding:in-reply-to; s=mesmtp; bh=XqyWd57DauhNI4xomrmmZwnE9LjEcFGBzr9mP8bADNg=; b=I4Hk+atHeL3z wGTeW7Y46ptZ6pbJAn2Pm/lnOwWmzwDeDczLILOSrs8+FIzpRdm3jhYlVTD3+Dlw ZsYuMmoWZFe0qlc1Z/+jfocbiZwZvJetR7LKA3y668jlDSJGIK9lCZ0dpxHMNcQn HmN9uYb0E2W9Cx/9B7ZbCZUYysG1F/M= DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-transfer-encoding:content-type :date:from:in-reply-to:message-id:mime-version:references :subject:to:x-me-proxy:x-me-proxy:x-me-sender:x-me-sender :x-sasl-enc; s=fm1; bh=XqyWd57DauhNI4xomrmmZwnE9LjEcFGBzr9mP8bAD Ng=; b=Aixp/rosYhHy/mAj5gaapC+qW0J/MEv1upbIsdWib9LZcr5jGZH+UYhE8 k8EUFkPQ1nZbkTVlqXUn5KpOnB8qNmJ5cJW123ynWY1TF7KCFlyEvCvcx2971Ofe wuZ3aSuuWspB9Bo5gQkLr62+n3c1+ONoagCvTNX/bQJ+jSr8cG7WMEKUCocRQPY0 qBtB4OVJhggqQY1lq4gfZ4OzPPJ+HBUeKQcxDoZfGUWc2z9FRwz64+vlfw/zSlSI FZR5OJUwJIB2pIyHVs+yviam8D0OOxd4w7O6day228K/IZW0pyizaji8wqGl5uEV x4TclhwI4K3Eqah/mWjVpCuXhk/cw== X-ME-Sender: X-ME-Received: X-ME-Proxy-Cause: gggruggvucftvghtrhhoucdtuddrgedvuddruddvgedgudeiucetufdoteggodetrfdotf fvucfrrhhofhhilhgvmecuhfgrshhtofgrihhlpdfqfgfvpdfurfetoffkrfgpnffqhgen uceurghilhhouhhtmecufedttdenucenucfjughrpeffhffvuffkfhggtggugfgjsehtke ertddttdejnecuhfhrohhmpefnvghoucfhrghmuhhlrghrihcuoehlvghosehfrghmuhhl rghrihdrnhgrmhgvqeenucggtffrrghtthgvrhhnpefgudffteettdekkeduhffgfefgie efgeeuieetudejffelieduueeifffgudfgudenucffohhmrghinhepghhnuhdrohhrghen ucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepmhgrihhlfhhrohhmpehlvghose hfrghmuhhlrghrihdrnhgrmhgv X-ME-Proxy: Received: by mail.messagingengine.com (Postfix) with ESMTPA; Thu, 30 Dec 2021 18:55:21 -0500 (EST) Date: Thu, 30 Dec 2021 18:55:19 -0500 From: Leo Famulari To: zimoun Subject: Re: bug#52906: python-biopython conflicts with python-numpy Message-ID: References: <86o84xpzhv.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: 8bit In-Reply-To: <86o84xpzhv.fsf@gmail.com> X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 52906 Cc: Ricardo Wurmus , 52906@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) On Thu, Dec 30, 2021 at 10:13:48PM +0100, zimoun wrote: > $ guix package -m /tmp/manifest.scm -p /tmp/fail > The following packages will be installed: > python-biopython 1.76 > python-numpy 1.21.3 > > guix package: error: profile contains conflicting entries for python-numpy > guix package: error: first entry: python-numpy@1.21.3 /gnu/store/ggrkk9l67fjn1cj7alr8vx40xv08a6h0-python-numpy-1.21.3 > guix package: error: second entry: python-numpy@1.20.3 /gnu/store/wgsmkn68q8h178sqc7ywjcdr330z9rb6-python-numpy-1.20.3 > guix package: error: ... propagated from python-biopython@1.76 > hint: Try upgrading both `python-numpy' and `python-biopython', or remove one of > them from the profile. > --8<---------------cut here---------------end--------------->8--- See also , "tests/guix-pack-relocatable fails / numpy propagation collision". > I propose to refer as name “python-numpy” the symbol python-numpy which > leads to a consistent scientific Python stack. And to refer as name > “python-numpy-next” the symbol python-numpy-next. Agreed, the stack should be kept consistent. From debbugs-submit-bounces@debbugs.gnu.org Fri Dec 31 05:18:10 2021 Received: (at 52906) by debbugs.gnu.org; 31 Dec 2021 10:18:11 +0000 Received: from localhost ([127.0.0.1]:55126 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3EzC-0006W9-LG for submit@debbugs.gnu.org; Fri, 31 Dec 2021 05:18:10 -0500 Received: from sender3-of-o51.zoho.com ([136.143.184.51]:21192) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3EzA-0006Vt-Vm; Fri, 31 Dec 2021 05:18:09 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1640945887; cv=none; d=zohomail.com; s=zohoarc; b=mzL4y4XsTVxtTlMF41bFETTfxDC+TkWPJsSXgw5gXHmRtABkrRm6gjxN7h4EGhQ7bLmbHQiRLaxnUbezJIBF/IYBqt/qJoWt1KnbHAvavPxa5CV1IMP7zzq+w6kpyVOJpHu35/cvK1m2We/p46cJXgTmjtYJ3BizKEe4+MSMYII= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1640945887; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=6kffbOQVpNk00RivrUNgGAcAKXt+pTHAcdNXAzmJgew=; b=OZklOi3k0tY3WyJ0ZipMoxtgO4stfQin2FuRPgmBsmo37lqPrw2qBm1Rr2NeOxos9xlZxxJZZkatmpM8ivMzXRz5PKmkkcY8/YF270VDqwkbCvhhYx6mQTOad2s6c+5ZPrAcbDSkyoZ0C4wCjIRqkyQpbhELhHiNitu4LeDYV2Q= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1640945887; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=6kffbOQVpNk00RivrUNgGAcAKXt+pTHAcdNXAzmJgew=; b=gSp7NuEE3M6DP4ETCUHV2aeNj8+W3GLntmkXOsV+zbMgsJEeI+XBV1EE952ryxli 0pqakaPwViq3Qy6VBorye3Kq9QgixJ/BAtUo7YeLYaLSlt1FRXBV8gFrFKhCE4tA2Ef PacuOyjYYTJE/Ord6/DvlJbVWbho+F8UX+YWX3wc= Received: from localhost (p54ad4eae.dip0.t-ipconnect.de [84.173.78.174]) by mx.zohomail.com with SMTPS id 1640945885129657.1187773466229; Fri, 31 Dec 2021 02:18:05 -0800 (PST) References: <86o84xpzhv.fsf@gmail.com> User-agent: mu4e 1.6.10; emacs 27.2 From: Ricardo Wurmus To: zimoun Subject: Re: bug#52906: python-biopython conflicts with python-numpy Date: Fri, 31 Dec 2021 11:14:22 +0100 In-reply-to: <86o84xpzhv.fsf@gmail.com> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <877dblgjs5.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 52906 Cc: debbugs-submit@debbugs.gnu.org, 52906@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) zimoun writes: > Hi, > > Using 7022eb6, the package =E2=80=99python-biopython=E2=80=99 propagates > =E2=80=99python-numpy=E2=80=99, i.e., python-numpy@1.20. Back then we reverted to numpy 1.20.x as the default because of numba, which did not work with 1.21. I=E2=80=99m now upgrading numba (and llvmlit= e) to a more recent release candidate, which should bring compatibility with numpy 1.21. If that works we=E2=80=99ll make python-numpy-next the new python-numpy. Your patch is an acceptable workaround. Arguably this should have been done when I made numpy 1.20 the default on the core-updates-frozen branch. I=E2=80=99ll apply your patch later today unless the switch to num= py 1.21 as the default is successful. --=20 Ricardo From debbugs-submit-bounces@debbugs.gnu.org Fri Dec 31 05:51:54 2021 Received: (at 52906) by debbugs.gnu.org; 31 Dec 2021 10:51:54 +0000 Received: from localhost ([127.0.0.1]:55174 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3FVp-0007aP-R6 for submit@debbugs.gnu.org; Fri, 31 Dec 2021 05:51:54 -0500 Received: from mail-il1-f179.google.com ([209.85.166.179]:41712) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3FVn-0007a9-2X; Fri, 31 Dec 2021 05:51:52 -0500 Received: by mail-il1-f179.google.com with SMTP id y16so20734621ilq.8; Fri, 31 Dec 2021 02:51:50 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=mime-version:references:in-reply-to:from:date:message-id:subject:to :cc:content-transfer-encoding; bh=Cww7aFfF7AdBHKl60kXiN/o+7DURglog9mfAQleC4zI=; b=X3Zn/+3PX0aXtrF0LhcfnxjawEigEjOLFarsxIFWFNyphzxm4C6k+naISowlmAzzdl 1i7+Q7pC5qzMst09SDPuGN7hmyVo7htJqJ2zo6rzh5Hh+IijOAvNW/Q+g9wFENcZt9Ca lWUFAT3esiIO8y8HN7fAEDmjMLShc2VHjLBxwUkHotyVgF5CVQsUxfjl/2R5aJzrS6v/ 25lN8ZT3kHwp4214iS8p3tiAZdZSVFzbgnBgHacEBzM8+FbdaXaMcLdF3bwON29UUPOL 4CQIVaEjaIHAz0Uo4WRgpzQvIBos6bgfGWKlyZXwOazIXak2QPjhvyjED4UU9ggrxfj9 bWcQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:mime-version:references:in-reply-to:from:date :message-id:subject:to:cc:content-transfer-encoding; bh=Cww7aFfF7AdBHKl60kXiN/o+7DURglog9mfAQleC4zI=; b=rwjJmwrbV/Q5Nj9lMYk0uG2m67bYHy/amgM152pCy/iVMc52+BWC12+owSqwNLyJVH fZPeVpBRSFWm6tbxR9Iy/o0MHZVS8IF9oN2pFHE+PHHLkvNN6VcsYUF7DYKbyBOJbiO8 0FY1iiglnYGaIGmR4oTg48yjp6TkDl2tE4STcp7aDi6vuD6YA8ixp+AW2YAorsoWXxvy 7UD/vGtmi+VPmJusOaOtkoLZPFFPDW/Ajg3LZe5rNKxZ2dvebZcNC//qUqqgIyBXmzrw /3wpxr1dxNvEYIrYCyT/6Hpk+xpMuw4EF7XrtudqhmYqmIB9jCH5pOoQC10yU3WEejRb cC6w== X-Gm-Message-State: AOAM532utlQXlYthr3SnH23TaRZ/9XPgJiJi3oVLE4iazse0TRiLRZhW /2Hb+mc/lRJX7GDyetCXsDas7mq0LQfXMWVpJLODX4Icv4AIKg== X-Google-Smtp-Source: ABdhPJxTOwub4Rgieq4/5DebBtWR95Loc04qqJ87lkPySYCYA0X8Ch820dihdTPYPyTxaDvNtghuF6n3sW+dL7VZK0U= X-Received: by 2002:a05:6e02:1bee:: with SMTP id y14mr15849806ilv.130.1640947905204; Fri, 31 Dec 2021 02:51:45 -0800 (PST) MIME-Version: 1.0 References: <86o84xpzhv.fsf@gmail.com> <877dblgjs5.fsf@elephly.net> In-Reply-To: <877dblgjs5.fsf@elephly.net> From: zimoun Date: Fri, 31 Dec 2021 11:51:34 +0100 Message-ID: Subject: Re: bug#52906: python-biopython conflicts with python-numpy To: Ricardo Wurmus Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 52906 Cc: debbugs-submit@debbugs.gnu.org, 52906@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi Ricardo, On Fri, 31 Dec 2021 at 11:18, Ricardo Wurmus wrote: > zimoun writes: > Back then we reverted to numpy 1.20.x as the default because of numba, > which did not work with 1.21. I=E2=80=99m now upgrading numba (and llvml= ite) to > a more recent release candidate, which should bring compatibility with > numpy 1.21. > > If that works we=E2=80=99ll make python-numpy-next the new python-numpy. I think that it could nice to have "python-numpy-next". Now, because we are right after a core-updates, the last Numpy version and the one we use as scientific Python stack are really close. But it will not necessary the case between 2 core-updates merges. Well, my point is to have the core-updates package python-numpy used by all the scientific Python stack and the leaf package python-numpy-next where updates can happen on master, it can be used with transformations etc., especially by scientific Python developper. Cheers, simon From debbugs-submit-bounces@debbugs.gnu.org Fri Dec 31 07:44:22 2021 Received: (at 52906) by debbugs.gnu.org; 31 Dec 2021 12:44:22 +0000 Received: from localhost ([127.0.0.1]:55384 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3HGg-00054H-1G for submit@debbugs.gnu.org; Fri, 31 Dec 2021 07:44:22 -0500 Received: from sender3-of-o51.zoho.com ([136.143.184.51]:21156) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3HGc-000544-SK; Fri, 31 Dec 2021 07:44:21 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1640954655; cv=none; d=zohomail.com; s=zohoarc; b=nZuU+2HuSC3NJraeBeO2LUXvE/c8nG4MpEegsl2hC9TVHzTfDHo2sQPlUSxSsoNs1l4jWoiz8XtPhD5k1LnVYDnQ0ngfUoVM8e8uYf+Wat+iZv6Jl5dOI/QKYg5oQtBsHkz2Eo2jsUECE4+rvjBpaVZIzVBRBCVmS658/PfV630= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1640954655; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=4Ogt0SPr7Uh11+yYfNN2EjvaIs0DsgF3aeciBiMS9c8=; b=UXa5MzqIOYeAFHXgt91aFs/bDn+RiKPfZn8jq2FaclmknwNegIxBOXx+c3qlI4b7ugQRALGtjfVvLnW7kQrb6p9gAUBbnJTfnlCkW9E97SBfhvC+iUUJLhsNkr8HG5xLGy1gvGJIM2ObEMWMYxNoW89yX1wA227h6cptN8R/88E= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1640954655; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=4Ogt0SPr7Uh11+yYfNN2EjvaIs0DsgF3aeciBiMS9c8=; b=ZylphyC4gEejREQSnKypEgpsu6O5jlz6fOGxOCHgNLppIRjoNAQMZQshF2rkMN2+ 5AUQZjKdpIISzJnrJ+9e4psOJWqzQTaBcHRBQoZs8SZD0qR5GMFy6h6Xhdx009/cNXp TGzThzLvPTBVrWcYce/Wc8z5ndNzhB8xhr0Rnk14= Received: from localhost (p54ad4eae.dip0.t-ipconnect.de [84.173.78.174]) by mx.zohomail.com with SMTPS id 1640954653660398.1279100462034; Fri, 31 Dec 2021 04:44:13 -0800 (PST) References: <86o84xpzhv.fsf@gmail.com> <877dblgjs5.fsf@elephly.net> User-agent: mu4e 1.6.10; emacs 27.2 From: Ricardo Wurmus To: zimoun Subject: Re: bug#52906: python-biopython conflicts with python-numpy Date: Fri, 31 Dec 2021 13:43:13 +0100 In-reply-to: X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87y241eyg5.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 52906 Cc: debbugs-submit@debbugs.gnu.org, 52906@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) zimoun writes: > Hi Ricardo, > > On Fri, 31 Dec 2021 at 11:18, Ricardo Wurmus wrote: >> zimoun writes: > >> Back then we reverted to numpy 1.20.x as the default because of numba, >> which did not work with 1.21. I=E2=80=99m now upgrading numba (and llvm= lite) to >> a more recent release candidate, which should bring compatibility with >> numpy 1.21. >> >> If that works we=E2=80=99ll make python-numpy-next the new python-numpy. > > I think that it could nice to have "python-numpy-next". Now, because > we are right after a core-updates, the last Numpy version and the one > we use as scientific Python stack are really close. But it will not > necessary the case between 2 core-updates merges. Well, my point is > to have the core-updates package python-numpy used by all the > scientific Python stack and the leaf package python-numpy-next where > updates can happen on master, it can be used with transformations > etc., especially by scientific Python developper. Yes, it=E2=80=99s a good idea to have it anyway. I just realized that switching over to the new numpy is going to cause more than a 1000 rebuilds. So I=E2=80=99ll apply your patch on the master branch and build out the numpy upgrade on a separate branch. Thank you! --=20 Ricardo From debbugs-submit-bounces@debbugs.gnu.org Fri Dec 31 07:51:15 2021 Received: (at 52906-done) by debbugs.gnu.org; 31 Dec 2021 12:51:15 +0000 Received: from localhost ([127.0.0.1]:55390 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3HNL-0005JB-1g for submit@debbugs.gnu.org; Fri, 31 Dec 2021 07:51:15 -0500 Received: from sender3-of-o51.zoho.com ([136.143.184.51]:21171) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3HNJ-0005J2-Eo for 52906-done@debbugs.gnu.org; Fri, 31 Dec 2021 07:51:14 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1640955072; cv=none; d=zohomail.com; s=zohoarc; b=gUP8v1GbvRB0iBQjsfxtUpdw2NmqIcr1hwJd/bFfMXMo2xCRbaWmmfa050kSJWt45x7t7go5fk0An3qjfwJ4BoLvJ5tbX+lRapts+T1zcrZ368FnjgvFXY35JgEmtm84zNvVTs4TL07IhtF4EYd7E/h1lSH2kcWFygS5+OjFQ+g= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1640955072; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=3au3ZBWn9ijIqm1hFPo/SE2kkF85mlyrxXerMXw2LY8=; b=coyJh25nG1OhRWKN1hwm/fzLTaskQXk8Qu9TDU3GF7Ijo3bNV1i6RzsohKhQjfDxvLdymh7K7ZLnEOIZmsTYUzJPVtnA6/O91ecUw8x6kW+ocBeZvzrOgeuwRudDe6IUs+rjs4Q/e9gu4xJvltFpwbd9bZpXPO2vuWkgc9YPns0= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1640955072; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=3au3ZBWn9ijIqm1hFPo/SE2kkF85mlyrxXerMXw2LY8=; b=G+Eop4c1/oufXraH0AwmXa5uF03cnIKkSdj5DODz2ctv0rTq1VxCF3CL3YboUttV dZnFZjuZ9W1lbvHY3YBBCMOXDsYAHF81axhRbA3573gAiif7I7OV1lYQ7zJG5VqHdOm eVky+kpNxj5UzeDDPGn8uwNBCdlcYuDXkbpx1L6M= Received: from localhost (p54ad4eae.dip0.t-ipconnect.de [84.173.78.174]) by mx.zohomail.com with SMTPS id 1640955069677305.18148793834223; Fri, 31 Dec 2021 04:51:09 -0800 (PST) References: <86o84xpzhv.fsf@gmail.com> User-agent: mu4e 1.6.10; emacs 27.2 From: Ricardo Wurmus To: zimoun Subject: Re: bug#52906: python-biopython conflicts with python-numpy Date: Fri, 31 Dec 2021 13:50:21 +0100 In-reply-to: <86o84xpzhv.fsf@gmail.com> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87tuepey4l.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 52906-done Cc: 52906-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) zimoun writes: > Attached a proposed patch. I applied it with a small change: I also had to override the name as =E2=80=9Cpython-numpy=E2=80=9D in the derived packages. Thanks! --=20 Ricardo From debbugs-submit-bounces@debbugs.gnu.org Fri Dec 31 08:16:59 2021 Received: (at 52906) by debbugs.gnu.org; 31 Dec 2021 13:16:59 +0000 Received: from localhost ([127.0.0.1]:55402 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3HmF-00065S-Ct for submit@debbugs.gnu.org; Fri, 31 Dec 2021 08:16:59 -0500 Received: from mail-io1-f47.google.com ([209.85.166.47]:39603) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3HmE-00065B-7H; Fri, 31 Dec 2021 08:16:58 -0500 Received: by mail-io1-f47.google.com with SMTP id y11so27487625iod.6; Fri, 31 Dec 2021 05:16:58 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=mime-version:references:in-reply-to:from:date:message-id:subject:to :cc:content-transfer-encoding; bh=jNXbGC/waqr2OveWl8IlDoj/+VDDBI2ibmyPsfEpVAE=; b=FjyJUPY3gwys/KGr2KTOHxUCTZhvkxOsKb5F4mvJ3dFWPohOsS22Fg8cqCfbADyPYA msyrejYMT6Q4xRLAkzDdO4tpDv3cUVbuV4BFXuVK7zRqRu3aVvwBWRaqul/Y5eiUNZwF f5wXtHjQiTzzqbtnxByAYCOfZzll5uSIDai1S7885HfoNRjzk4A6hI5ln8OfFoZrBULR K2HEfq+OBQV4IKCd7/jEHqbOMm8Q72TQcIiuL7+hJfKxZ2SwV3nMu3dA+Ure0/bG+zhl xwN8biH0SkSqvczXPBHGz8WynIitbih7BBG+6WfbVxzgcTtP5amW8tBz6E9fGiewi4/s QCgA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:mime-version:references:in-reply-to:from:date :message-id:subject:to:cc:content-transfer-encoding; bh=jNXbGC/waqr2OveWl8IlDoj/+VDDBI2ibmyPsfEpVAE=; b=IRT/fEFGK2KuNnMV4IlWF5JApo3nUqDR3RyIcqJg81u0zs4ZEwnQ2UNEWnojMVlcpq e97f7Xz52f0iEO9WkiHD1Wgd8xF2dkFXPy+V2ywHh4+pOz/URxDMjeb/mmdH0Wva20+h EAGqP7U9s/GLDXl6imV+zV0DdrrBd9QJ19RmWfiB3+Mw5d+3e8DJ6HYBWiodoOEnj8lu QCAwCVJCWY+DDnFVNboHKMGKZeuyMt9vb9+IKQ0r/l3KhINy8+CYVPEIvHz/+kUUxAEB 9v0g6ArhHUPrOJ8HZ//5s/Om0YkaIMfWaHvN6RoCGUv35g/5nhMMpSm5x8ZMQabgxPwY C30w== X-Gm-Message-State: AOAM532Km0i/m54ZN+7f1hgNdrjVtYshyc3qIrgw7MZ3hYwpEQRuHJ8r bberbN1TvIvif40Y++9ZnTCLbG8bpasWjSe4nP2f6lr3yqIXlw== X-Google-Smtp-Source: ABdhPJzKG4H1jnqBBD2/H5znL4SHqUccNIO4SUeD3TPa9i6agvTlGgIc4Sp+0Vyc6YqZjEEGKU+GeUYyZn3oEbQinuc= X-Received: by 2002:a5d:850a:: with SMTP id q10mr16196802ion.171.1640956612219; Fri, 31 Dec 2021 05:16:52 -0800 (PST) MIME-Version: 1.0 References: <86o84xpzhv.fsf@gmail.com> <877dblgjs5.fsf@elephly.net> <87y241eyg5.fsf@elephly.net> In-Reply-To: <87y241eyg5.fsf@elephly.net> From: zimoun Date: Fri, 31 Dec 2021 14:16:40 +0100 Message-ID: Subject: Re: bug#52906: python-biopython conflicts with python-numpy To: Ricardo Wurmus Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 52906 Cc: debbugs-submit@debbugs.gnu.org, 52906@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, On Fri, 31 Dec 2021 at 13:44, Ricardo Wurmus wrote: > I just realized that switching over to the new numpy is going to cause > more than a 1000 rebuilds. So I=E2=80=99ll apply your patch on the maste= r > branch and build out the numpy upgrade on a separate branch. Thanks! A separate wip-* branch? Cheers, simon From debbugs-submit-bounces@debbugs.gnu.org Fri Dec 31 15:19:32 2021 Received: (at 52906) by debbugs.gnu.org; 31 Dec 2021 20:19:32 +0000 Received: from localhost ([127.0.0.1]:57497 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3ONA-0005En-4U for submit@debbugs.gnu.org; Fri, 31 Dec 2021 15:19:32 -0500 Received: from sender3-of-o51.zoho.com ([136.143.184.51]:21178) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n3ON8-0005Ea-4t; Fri, 31 Dec 2021 15:19:31 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1640981967; cv=none; d=zohomail.com; s=zohoarc; b=GnnYnKpB9izQ9ttopMhW0NFbTjye7uK5G9j/YoMivLqc2isnFnZZAtPnoKEhOp7dAu97tFGbSxrbRPZeA/GNIvjQgacPJW6vFHBXa1VWc25/GunlkuC2c2cEzpItHvO5O/gQVATA7mFtzWIZSaKXo2j97IuosBZja2DSEvlSYu4= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1640981967; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=neUhCsCKHM5dJGolWGugxZhe4ktvVdUR5pMY+ZdDZak=; b=R658e+Y44Ojmgi80yl6yBL71c9Thg2iyr2qFTSvUWZ8pNrPAYNm7ivV/3YNNKdotDxNmf9MXTUmhHfl4+gatYAg7W6DZccGAJSJn4vo2afL6tXo3xUNqZH+b4XyHZ0tVfcCsQNRvE3VI/4JWOQNQdtu09o4pRHqFAZ3+MSHfFn4= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1640981967; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=neUhCsCKHM5dJGolWGugxZhe4ktvVdUR5pMY+ZdDZak=; b=AtpqF1lPNwxSxKFINed4i8YqIgna7J766q+0U0Gy1iGNOK86Q3kZVEH1L+PvQRZG uwSVzZZlxUS463MKRrLsmI3mDO0MC84q8Wd5N57uH4vcYbMFx2TYuyFNdAGs2ykK4z2 DnGHNGRG5tbTocACStKxV8m7VsuKfkFEWyJ7JAII= Received: from localhost (p54ad4eae.dip0.t-ipconnect.de [84.173.78.174]) by mx.zohomail.com with SMTPS id 1640981966197920.8898798883997; Fri, 31 Dec 2021 12:19:26 -0800 (PST) References: <86o84xpzhv.fsf@gmail.com> <877dblgjs5.fsf@elephly.net> <87y241eyg5.fsf@elephly.net> User-agent: mu4e 1.6.10; emacs 27.2 From: Ricardo Wurmus To: zimoun Subject: Re: bug#52906: python-biopython conflicts with python-numpy Date: Fri, 31 Dec 2021 21:18:43 +0100 In-reply-to: X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87h7aofrxx.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 52906 Cc: debbugs-submit@debbugs.gnu.org, 52906@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) zimoun writes: > Hi, > > On Fri, 31 Dec 2021 at 13:44, Ricardo Wurmus wrote: > >> I just realized that switching over to the new numpy is going to cause >> more than a 1000 rebuilds. So I=E2=80=99ll apply your patch on the mast= er >> branch and build out the numpy upgrade on a separate branch. > > Thanks! A separate wip-* branch? Yes, I wanted to build this out on wip-upgrade-numpy or something similar. I=E2=80=99d like to avoid entangling this with other upgrades on a core-updates or staging branch. --=20 Ricardo From unknown Sat Jun 21 03:30:44 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 29 Jan 2022 12:24:04 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator