From unknown Sat Jun 21 10:29:23 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#52123 <52123@debbugs.gnu.org> To: bug#52123 <52123@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-derfinderhelper. Reply-To: bug#52123 <52123@debbugs.gnu.org> Date: Sat, 21 Jun 2025 17:29:23 +0000 retitle 52123 [PATCH] gnu: Add r-derfinderhelper. reassign 52123 guix-patches submitter 52123 zimoun severity 52123 normal tag 52123 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Fri Nov 26 07:42:20 2021 Received: (at submit) by debbugs.gnu.org; 26 Nov 2021 12:42:20 +0000 Received: from localhost ([127.0.0.1]:58903 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mqaYW-0002IF-8t for submit@debbugs.gnu.org; Fri, 26 Nov 2021 07:42:20 -0500 Received: from lists.gnu.org ([209.51.188.17]:45784) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mqaYU-0002I7-9X for submit@debbugs.gnu.org; Fri, 26 Nov 2021 07:42:18 -0500 Received: from eggs.gnu.org ([209.51.188.92]:44756) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mqaYS-00012m-2R for guix-patches@gnu.org; Fri, 26 Nov 2021 07:42:18 -0500 Received: from [2a00:1450:4864:20::429] (port=33750 helo=mail-wr1-x429.google.com) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mqaYQ-0007ZA-Ki for guix-patches@gnu.org; Fri, 26 Nov 2021 07:42:15 -0500 Received: by mail-wr1-x429.google.com with SMTP id d24so18472470wra.0 for ; Fri, 26 Nov 2021 04:42:10 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=oBCcRYXxflsOfgMd51aNC8Mhbui2BEftvB+dO5/qe74=; b=i5OyRbCrWqCegWPM+PrsQkcei/6JX7R6ZBDiQTIWdmoQ7Pmm7Wg4dIWcEcnmQvxDGv rVaMnGCmtROtYizd3uTiwHyG6RYruzvZxZ3vyDSWJDg8uaCLBCxUzFXiiUbflqoJ6IQu cevr8J1Y5PURrSXx21kOkya+Ii8igrdS6NI0mYfyZ1mo5dZF6M1wSQl0lDVvP57+zSXa IMaofLmI3hRJ7QwJn27evfdJZdMq8tBX07JmHV5aIJ2TVnEliVyjXE9rGpKt7xo5pQQZ JDeUqAgKgri9N88NtrEzpIIysaaWrZiFmuoD7hPHkhi3SLCx5ZexISLAfqHaijnv98jS PODQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=oBCcRYXxflsOfgMd51aNC8Mhbui2BEftvB+dO5/qe74=; b=YyIHzxG44BUwWL0/b5hO2zhlvnyO4f2cey+W7MSDshv3dmWRrB4re0ldNjS+CAP6AU /lhIFT8mjRJ7xjJ/PkdCV33swiGfpsGZ6yiNhIPbIe/bqmCQiT+UXx6QNjqJFk2/HZ9c S4nZrWXULLpW/W6sxIyVECrfRj/qM7M9X6LnOoqKBaKnEVRnyc0UWK4KS17zZ5SD683M 9N8cqColosbceKCluzxVwx+wm97rkow/7qtZu7k5g4IbCh4BZlbpiiaI3CjLlsneNl3r mEqUnC/SH65ZpC2Bp7eIboR/HGFWCmt6HpSuvYqjvLCd/XAlqmgRihfuhZDl7RtokuWm VsdA== X-Gm-Message-State: AOAM532y5Tx/lOame+dMV+kvJKmtPaRlgGKRW4v2prnLj8UzKZKCH57S k7zG3D+Ss5GQZVixhsNfbCe2G5CPh+I= X-Google-Smtp-Source: ABdhPJyAwJENOethBX9NcwMcYa3epvrAYF88vVe6dy8CvmaTGHrSSfsgsrjR18pBXEuVkXYIc5vQnw== X-Received: by 2002:a05:6000:2ae:: with SMTP id l14mr13749551wry.142.1637930529262; Fri, 26 Nov 2021 04:42:09 -0800 (PST) Received: from localhost.localdomain ([2a01:e0a:59b:9120:65d2:2476:f637:db1e]) by smtp.gmail.com with ESMTPSA id y12sm5511607wrn.73.2021.11.26.04.42.08 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 26 Nov 2021 04:42:08 -0800 (PST) From: zimoun To: guix-patches@gnu.org Subject: [PATCH] gnu: Add r-derfinderhelper. Date: Fri, 26 Nov 2021 13:41:54 +0100 Message-Id: <20211126124154.351822-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.33.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Host-Lookup-Failed: Reverse DNS lookup failed for 2a00:1450:4864:20::429 (failed) Received-SPF: pass client-ip=2a00:1450:4864:20::429; envelope-from=zimon.toutoune@gmail.com; helo=mail-wr1-x429.google.com X-Spam_score_int: -12 X-Spam_score: -1.3 X-Spam_bar: - X-Spam_report: (-1.3 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, PDS_HP_HELO_NORDNS=0.001, RCVD_IN_DNSWL_NONE=-0.0001, RDNS_NONE=0.793, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=no autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/bioconductor.scm (r-derfinderhelper): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a66cc22fff..3dc8c61c4e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1610,6 +1610,33 @@ (define-public r-delayedarray @code{Matrix} objects, and ordinary arrays and data frames.") (license license:artistic2.0))) +(define-public r-derfinderhelper + (package + (name "r-derfinderhelper") + (version "1.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "derfinderHelper" version)) + (sha256 + (base32 "06x0wy2wzpngak1pnrj2p0xzlx1nbcz0hs3p9q5ic6ib2rgwrh35")))) + (properties `((upstream-name . "derfinderHelper"))) + (build-system r-build-system) + (propagated-inputs + `(("r-iranges" ,r-iranges) + ("r-matrix" ,r-matrix) + ("r-s4vectors" ,r-s4vectors))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/leekgroup/derfinderHelper") + (synopsis "Helper for derfinder") + (description + "This package speeds up the derfinder package when using multiple cores. +It is particularly useful when using BiocParallel and it helps reduce the time +spent loading the full derfinder package when running the F-statistics +calculation in parallel.") + (license license:artistic2.0))) + (define-public r-bluster (package (name "r-bluster") -- 2.33.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Nov 26 07:53:53 2021 Received: (at 52123-done) by debbugs.gnu.org; 26 Nov 2021 12:53:53 +0000 Received: from localhost ([127.0.0.1]:58935 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mqajh-0002dF-Fz for submit@debbugs.gnu.org; Fri, 26 Nov 2021 07:53:53 -0500 Received: from eggs.gnu.org ([209.51.188.92]:47888) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mqaje-0002d0-Uk for 52123-done@debbugs.gnu.org; Fri, 26 Nov 2021 07:53:52 -0500 Received: from [2001:470:142:3::e] (port=47060 helo=fencepost.gnu.org) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mqajZ-0001UQ-Kd; Fri, 26 Nov 2021 07:53:45 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:In-Reply-To:Date:References:Subject:To: From; bh=fAydUNLDfLcQRUT8AmauTnEoOEqg8fdJ/cozKlFx9HI=; b=Y/XmiOAZ7Lsr+tG5QmNo mNbiHe/7WiEbv8NjKUkSIDeRTfVdW7PQwhi5ZG6ewI7rnlah8f1lGyW+1xT5ttfL9yaydXXKT22FQ pdnpXfcoK/KglXSN4AH7slPv5PEQSLyutMvNop7sBiDvrn1RNusD16rFLkrYCH5jHZ0X8Dt54y2ZS kAAiK8+W0+9JpbjJgCqG1RcRJz3uKy9yie+DG4N5SDq55GXMNJes+4lpSUKqP7crgCEeQNt9VLnbe gY0Jfnjdxx0r4Xf3N/2HF1e1o7elIPooxVCChtSaOXdEniAg4TSDRNiLdOMt089jLxqAJH6fpv4bL DvB6QLTs2MHmlg==; Received: from [193.50.110.168] (port=36684 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mqajZ-0003ft-F6; Fri, 26 Nov 2021 07:53:45 -0500 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: zimoun Subject: Re: bug#52123: [PATCH] gnu: Add r-derfinderhelper. References: <20211126124154.351822-1-zimon.toutoune@gmail.com> Date: Fri, 26 Nov 2021 13:53:43 +0100 In-Reply-To: <20211126124154.351822-1-zimon.toutoune@gmail.com> (zimoun's message of "Fri, 26 Nov 2021 13:41:54 +0100") Message-ID: <87mtlr9iy0.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 52123-done Cc: 52123-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hi! zimoun skribis: > * gnu/packages/bioconductor.scm (r-derfinderhelper): New variable. Thanks for this wonderful package, pushed! https://git.savannah.gnu.org/cgit/guix.git/commit/?id=3D128fd2ab594b25974= a67fc7217107b8b83efda4d Ludo=E2=80=99. PS: Bonjour aux participant=C2=B7es du Caf=C3=A9 Guix. :-) From unknown Sat Jun 21 10:29:23 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 25 Dec 2021 12:24:06 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator