Subject: bug#52091: closed (Re: bug#52091: [PATCH] gnu: Add ccwl.)

From: [email-masked] (GNU bug Tracking System)
Date: Fri, 10 Dec 2021 10:08:02 +0000

Your bug report

#52091: [PATCH] gnu: Add ccwl.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
52091: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=52091
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: Re: bug#52091: [PATCH] gnu: Add ccwl.
From: Arun Isaac <[email-masked]>
To: Ludovic Courtès <[email-masked]>
Cc: [email-masked]
Date: Fri, 10 Dec 2021 15:37:04 +0530
List-Id: <debbugs-submit.debbugs.gnu.org>

Pushed after adding bash-minimal to inputs (now required due to the
wrap-program phase), thank you!

Subject: [PATCH] gnu: Add ccwl.
From: Arun Isaac <[email-masked]>
To: [email-masked]
Cc: Arun Isaac <[email-masked]>
Date: Thu, 25 Nov 2021 11:16:27 +0530
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/bioinformatics.scm (ccwl): New variable.
---
 gnu/packages/bioinformatics.scm | 35 +++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 67335daead..ec34ff0916 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -142,6 +142,7 @@ (define-module (gnu packages bioinformatics)
   #:use-module (gnu packages ruby)
   #:use-module (gnu packages serialization)
   #:use-module (gnu packages shells)
+  #:use-module (gnu packages skribilo)
   #:use-module (gnu packages sphinx)
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages statistics)
@@ -15886,3 +15887,37 @@ (define-public r-cytonorm
 control samples and applying quantile normalization on all markers of
 interest.")
       (license license:gpl2+))))
+
+(define-public ccwl
+  (package
+    (name "ccwl")
+    (version "0.2.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://ccwl.systemreboot.net/releases/ccwl-"
+                           version ".tar.lz"))
+       (sha256
+        (base32
+         "1ar8rfz3zrksgygrv67zv77y8gfvvz54zcs546jn6j28y20basla"))))
+    (build-system gnu-build-system)
+    (arguments
+     '(#:make-flags '("GUILE_AUTO_COMPILE=0"))) ; to prevent guild warnings
+    (inputs
+     `(("guile" ,guile-3.0)
+       ("guile-libyaml" ,guile-libyaml)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)
+       ("lzip" ,lzip)
+       ;; To build documentation
+       ("cwltool" ,cwltool)
+       ("graphviz" ,graphviz)
+       ("skribilo" ,skribilo)))
+    (home-page "https://ccwl.systemreboot.net")
+    (synopsis "Concise common workflow language")
+    (description "The @acronym{ccwl, Concise Common Workflow Language} is a
+concise syntax to express CWL workflows.  ccwl is a compiler to generate CWL
+workflows from concise descriptions in ccwl.  It is implemented as an
+@acronym{EDSL, Embedded Domain Specific Language} in the Scheme programming
+language.")
+    (license license:gpl3+)))
-- 
2.34.0