GNU bug report logs - #51511
[PATCH] gnu: Add r-xmapbridge.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#51511: closed ([PATCH] gnu: Add r-xmapbridge.)
Date: Sat, 27 Nov 2021 09:46:01 +0000

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Your message dated Sat, 27 Nov 2021 10:44:34 +0100
with message-id <87a6hqoru0.fsf <at> elephly.net>
and subject line Re: [PATCH] gnu: Add r-xmapbridge.
has caused the debbugs.gnu.org bug report #51511,
regarding [PATCH] gnu: Add r-xmapbridge.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: rekado <at> elephly.net, Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-xmapbridge.
Date: Sat, 30 Oct 2021 16:20:35 +0200

* gnu/packages/bioconductor.scm (r-xmapbridge): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 90a0e1f288..24ab4897d5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4627,6 +4627,33 @@ (define-public r-vsn
 and specific in detecting differential transcription.")
     (license license:artistic2.0)))
 
+(define-public r-xmapbridge
+  (package
+    (name "r-xmapbridge")
+    (version "1.52.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "xmapbridge" version))
+       (sha256
+        (base32 "1zsqhisbq6f9qgw9f0a6ixxh635h3qm17117yfns5nnfw73ndlgi"))))
+    (properties `((upstream-name . "xmapbridge")))
+    (build-system r-build-system)
+    (home-page "https://git.bioconductor.org/packages/xmapbridge")
+    (synopsis "Display numeric data in the web based genome browser X:MAP")
+    (description
+     "The package @code{r-xmapBridge} can plot graphs in the X:Map genome
+browser.  X:Map uses the Google Maps API to provide a scrollable view of the
+genome.  It supports a number of species, and can be accessed at
+http://xmap.picr.man.ac.uk.  This package exports plotting files in a suitable
+format.  Graph plotting in R is done using calls to the functions
+@code{xmap.plot} and @code{xmap.points}, which have parameters that aim to be
+similar to those used by the standard plot methods in R.  These result in data
+being written to a set of files (in a specific directory structure) that
+contain the data to be displayed, as well as some additional meta-data
+describing each of the graphs.")
+    (license license:lgpl3)))
+
 (define-public r-xvector
   (package
     (name "r-xvector")
-- 
2.33.0

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 51511-done <at> debbugs.gnu.org
Subject: Re: [PATCH] gnu: Add r-xmapbridge.
Date: Sat, 27 Nov 2021 10:44:34 +0100

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> 
writes:

> * gnu/packages/bioconductor.scm (r-xmapbridge): New variable.

Applied, thank you!

-- 
Ricardo

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