From unknown Thu Jun 19 14:07:04 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#51464 <51464@debbugs.gnu.org> To: bug#51464 <51464@debbugs.gnu.org> Subject: Status: Add r-xnastring (bioconductor) and r-formattable (cran) Reply-To: bug#51464 <51464@debbugs.gnu.org> Date: Thu, 19 Jun 2025 21:07:04 +0000 retitle 51464 Add r-xnastring (bioconductor) and r-formattable (cran) reassign 51464 guix-patches submitter 51464 "MadalinIonel.Patrascu@mdc-berlin.de" severity 51464 normal thanks From debbugs-submit-bounces@debbugs.gnu.org Thu Oct 28 14:24:31 2021 Received: (at submit) by debbugs.gnu.org; 28 Oct 2021 18:24:31 +0000 Received: from localhost ([127.0.0.1]:53110 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mgA4l-0000CS-9n for submit@debbugs.gnu.org; Thu, 28 Oct 2021 14:24:31 -0400 Received: from lists.gnu.org ([209.51.188.17]:57352) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mgA4h-0000CI-H8 for submit@debbugs.gnu.org; Thu, 28 Oct 2021 14:24:29 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:56636) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mgA4g-0003am-KV for guix-patches@gnu.org; Thu, 28 Oct 2021 14:24:27 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:54639) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mgA4d-0000xY-Vg for guix-patches@gnu.org; Thu, 28 Oct 2021 14:24:25 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id BE5FA1600E5 for ; Thu, 28 Oct 2021 20:24:19 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= mime-version:content-type:content-type:content-language :accept-language:message-id:date:date:subject:subject:from:from :received:received:received:received; s=mdc; t=1635445459; x= 1637259860; bh=OjKtj/qewuYEVqukTp3noTbFLMuFik0SOFjmZmStquo=; b=S WFI+VxN8fcwJA+sWtB1eokTJZWGkVkcRW13/lH8m6QiQNQEDFzLc/OL5dbdIt2H+ IePk/CUjdeHYLnwZodZf58cGbOhrJQAARBy1c2N8r9Oel6swU90hnWrHbY0vQcJN bgIOiaihwKHn++c8w8izNd6AythnvhPtK9C1fNdW9I= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id Jim3azCOnJiX for ; Thu, 28 Oct 2021 20:24:19 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Thu, 28 Oct 2021 20:24:19 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2308.15; Thu, 28 Oct 2021 20:24:18 +0200 Received: from SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a]) by SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a%2]) with mapi id 15.01.2308.015; Thu, 28 Oct 2021 20:24:18 +0200 From: "MadalinIonel.Patrascu@mdc-berlin.de" To: "guix-patches@gnu.org" Subject: Add r-xnastring (bioconductor) and r-formattable (cran) Thread-Topic: Add r-xnastring (bioconductor) and r-formattable (cran) Thread-Index: AQHXzCkFhTDRix24bEmuheSfwinw6Q== Date: Thu, 28 Oct 2021 18:24:18 +0000 Message-ID: <1a5699df937b4f44a0d5676a832487e9@mdc-berlin.de> Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.52] x-tm-as-product-ver: SMEX-14.0.0.3092-8.6.1018-26496.002 x-tm-as-result: No-10--7.553600-8.000000 x-tmase-matchedrid: gVo1o+4QhtI25XOhnouJ5RuurbgYp+HQXef5t6q8RcxFdhD9u4+PBJZd R8KtHW+EGJmxWFq4sSd3EdZZL32rNMRb3JaZ4jjzZBiPr4EU8TD1A+zugB2D5QpTK6zme5eongI gpj8eDcBbCjvvWZW+SUIIRRQc6cDWi1ZwLTMCLnhhrqWsOn6izc4y/IO1vgfoAYtnZ+2VyaJQXo x8Qq8GGQatSTXtoo3YZQrsHGEPSmKPF35SYq8cqgMSxgBB9WEIzySyOxN4JpEtghRbrQPqpg== x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--7.553600-8.000000 x-tmase-version: SMEX-14.0.0.3092-8.6.1018-26496.002 x-tm-snts-smtp: 117A7C736054DA851D7CDC6254C840BAE0F2785A3B10C994DE3CD1ED9B2C5E622000:F Content-Type: multipart/alternative; boundary="_000_1a5699df937b4f44a0d5676a832487e9mdcberlinde_" MIME-Version: 1.0 Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -28 X-Spam_score: -2.9 X-Spam_bar: -- X-Spam_report: (-2.9 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, HTML_MESSAGE=0.001, MIME_HTML_MOSTLY=0.1, PYZOR_CHECK=1.392, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, TVD_SPACE_RATIO=0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) --_000_1a5699df937b4f44a0d5676a832487e9mdcberlinde_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable --_000_1a5699df937b4f44a0d5676a832487e9mdcberlinde_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable

--_000_1a5699df937b4f44a0d5676a832487e9mdcberlinde_-- From debbugs-submit-bounces@debbugs.gnu.org Thu Oct 28 14:26:35 2021 Received: (at 51464) by debbugs.gnu.org; 28 Oct 2021 18:26:35 +0000 Received: from localhost ([127.0.0.1]:53121 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mgA6k-0000G5-Q3 for submit@debbugs.gnu.org; Thu, 28 Oct 2021 14:26:35 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:51103) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mgA6h-0000Fn-7X for 51464@debbugs.gnu.org; Thu, 28 Oct 2021 14:26:33 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id C7FA3A012C; Thu, 28 Oct 2021 20:26:24 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1635445584; x=1637259985; bh=QJae06DPreJUgvRJU2YoY+sChF/1fR6ZdDQxDZNPZOA=; b=oxe48e2edlYn +CJ4GjNoKzAECZcAnRz+79Qc4USCra3syirzdymnMKAi7owcAs5myUGG7MO7k/ic tGEMhU9jQ5OJrw1jlHZhMJH9jTmEDkdkkPRQoQ3gNl4wn3zAsxJoNtFBx54H64q1 0CXRkmsL+XbUdhFAVhC7EFGL+yrfAUc= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id kXMjA7_U_UCr; Thu, 28 Oct 2021 20:26:24 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS; Thu, 28 Oct 2021 20:26:24 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2308.15; Thu, 28 Oct 2021 20:26:23 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <51464@debbugs.gnu.org> Subject: [PATCH 1/2] gnu: Add r-formattable. Date: Thu, 28 Oct 2021 20:26:08 +0200 Message-ID: <20211028182609.1880-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.33.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-8.6.1018-26496.002 X-TM-AS-Result: No-10--0.326200-8.000000 X-TMASE-MatchedRID: awl4vggHpxwsaaYlMvaOHAPZZctd3P4B+vMubB6g3vQdMyPlrn/uJhgL quinvN5kRRa406V/YwwKl5/g/W44hrJJ3aMCJ9Hhz5r5y9mouSAqSb58EIanQOC4TzZ/3wLc86z su81iFU5bHRirBBg/NNbAH1iG3cDX27YWB4baXJJqZ6OipRp3ekGtrAxy5ENOmHjEz2gByy3gwr KWdh8lmDZFwD9ucw2yElOOOz3JPpijxYyRBa/qJcFwgTvxipFa9xS3mVzWUuAojN1lLei7RSdxC IjqDL0Xsj1yC75CEfdfUoNKiWVld6zL3GUkpPunFNQZ+ulb9qt9EiPb61v0iuVNEfFvpnAv9UVD EAn+00Hvo2iYPNa85DVIWe9PfG2D9leimmhcnaXe4hkjgmJMlhA8jgfAt5oQ X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.326200-8.000000 X-TMASE-Version: SMEX-14.0.0.3092-8.6.1018-26496.002 X-TM-SNTS-SMTP: 38C2F13F9903DEF5A9FECB43CBB66FB4265BB01D6C07CCE14303208BD1615A892000:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 51464 Cc: rekado@elephly.net, =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-formattable): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 792ea2a75b..03a1b3206a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23669,6 +23669,35 @@ (define-public r-forecast space models and automatic ARIMA modelling.") (license license:gpl3))) +(define-public r-formattable + (package + (name "r-formattable") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "formattable" version)) + (sha256 + (base32 "1vdxi0xmg019qyzjrp8bkjxciz245jcxsrkhfzd44ynqcwi4s3ag")))) + (properties `((upstream-name . "formattable"))) + (build-system r-build-system) + (propagated-inputs + `(("r-htmltools" ,r-htmltools) + ("r-htmlwidgets" ,r-htmlwidgets) + ("r-lifecycle" ,r-lifecycle) + ("r-rmarkdown" ,r-rmarkdown))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/renkun-ken/formattable") + (synopsis "Printing vectors and data frames with text fromatting") + (description + "This R package @code{r-formattable} provides functions to create +formattable vectors and data frames. @emph{Formattable} vectors are printed +with text formatting, and formattable data frames are printed with multiple +types of formatting in HTML to improve the readability of data presented in +tabular form rendered in web pages.") + (license license:expat))) + (define-public r-xmisc (package (name "r-xmisc") -- 2.33.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Oct 28 14:26:58 2021 Received: (at 51464) by debbugs.gnu.org; 28 Oct 2021 18:26:58 +0000 Received: from localhost ([127.0.0.1]:53124 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mgA78-0000Gj-3S for submit@debbugs.gnu.org; Thu, 28 Oct 2021 14:26:58 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:45539) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mgA76-0000GW-5V for 51464@debbugs.gnu.org; Thu, 28 Oct 2021 14:26:56 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 375CB1600E5; Thu, 28 Oct 2021 20:26:50 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1635445609; x=1637260010; bh=Pid/hs6LDRvObZT/51jw8Rnid3SOcRRH1WB 2OeO3vRA=; b=fYVP80KrBByRYt1APp4ajGGQAJULjYyJJVhREbMNCNphqxhDnTe 0NiAZdriJdZ/7m8/8hAiFwLth1tOkZtnEN4kLAUOOSHjV+3mu1TwHFni+u45lKDX gBhMtSbAcy9iXo8saEDqqFNufqQFZVXCZNGege0Az1LI4wDajdeNITXc= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id I6Ov0Jp4LbXJ; Thu, 28 Oct 2021 20:26:49 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS; Thu, 28 Oct 2021 20:26:49 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2308.15; Thu, 28 Oct 2021 20:26:49 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <51464@debbugs.gnu.org> Subject: [PATCH 2/2] gnu: Add r-xnastring. Date: Thu, 28 Oct 2021 20:26:09 +0200 Message-ID: <20211028182609.1880-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.33.0 In-Reply-To: <20211028182609.1880-1-madalinionel.patrascu@mdc-berlin.de> References: <20211028182609.1880-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-8.6.1018-26496.002 X-TM-AS-Result: No-10--1.384200-8.000000 X-TMASE-MatchedRID: awl4vggHpxwsaaYlMvaOHAPZZctd3P4BC//1TMV5chPIFck3f6fvyNN0 iv48FC5C7IvvzMgzLKZM7FV2jxGQlui04AO+ZCiuTT9ZveSPAxX4qCLIu0mtICb002JdKf+/1xv NmiS10Z6MYg2Zw8PzysPvxoWsx4Ri5FmazwMilg+GOUGPCmibUy9eSYpU2Ct+kYldHqNEW7hy4y icSR/s8dncSohuTctZElOOOz3JPpijxYyRBa/qJcFwgTvxipFa9xS3mVzWUuAojN1lLei7RV/LK pCpRG8sjdWLAUt5oyOJ8E2VsaHyJ9UKNNZhf6ZLhu6bvm60Ag1in1mpGarqO0I4YWF7YT8nS2XS ALiaz+awRkHN4WK75jVIWe9PfG2D9leimmhcnaXe4hkjgmJMlhA8jgfAt5oQ X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.384200-8.000000 X-TMASE-Version: SMEX-14.0.0.3092-8.6.1018-26496.002 X-TM-SNTS-SMTP: 6B9728900E09A00E89D5288551EBAE1BD9D5D08A82624CA56E601343DDCEAE3B2000:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 51464 Cc: rekado@elephly.net, =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/bioconductor.scm (r-xnastring): New variable. --- gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 90a0e1f288..abb5b7065d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4627,6 +4627,50 @@ (define-public r-vsn and specific in detecting differential transcription.") (license license:artistic2.0))) +(define-public r-xnastring + (package + (name "r-xnastring") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "XNAString" version)) + (sha256 + (base32 "1rpcvn54a6s3iwmdg96rshilr1mqcb1nlbvzbyp5xi55km7iwm8i")))) + (properties `((upstream-name . "XNAString"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-data-table" ,r-data-table) + ("r-formattable" ,r-formattable) + ("r-future-apply" ,r-future-apply) + ("r-genomicranges" ,r-genomicranges) + ("r-htmltools" ,r-htmltools) + ("r-htmlwidgets" ,r-htmlwidgets) + ("r-iranges" ,r-iranges) + ("r-rcpp" ,r-rcpp) + ("r-rmarkdown" ,r-rmarkdown) + ("r-s4vectors" ,r-s4vectors) + ("r-stringi" ,r-stringi) + ("r-stringr" ,r-stringr))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://git.bioconductor.org/packages/XNAString") + (synopsis "Manipulation of modified oligonucleotide sequences") + (description + "The R @code{XNAString} package allows for description of base sequences +and associated chemical modifications in a single object. XNAString is able to +capture single stranded, as well as double stranded molecules. Chemical +modifications are represented as independent strings associated with different +features of the molecules (base sequence, sugar sequence, backbone sequence, +modifications) and can be read or written to a @dfn{Hierarchical Editing +Language for Macromolecules} (HELM) notation. It also enables secondary +structure prediction using RNAfold from ViennaRNA. XNAString is designed to be +efficient representation of nucleic-acid based therapeutics, therefore it +stores information about target sequences and provides interface for matching +and alignment functions from Biostrings package.") + (license license:gpl2))) + (define-public r-xvector (package (name "r-xvector") -- 2.33.0 From debbugs-submit-bounces@debbugs.gnu.org Sat Oct 30 15:55:14 2021 Received: (at 51464) by debbugs.gnu.org; 30 Oct 2021 19:55:14 +0000 Received: from localhost ([127.0.0.1]:58490 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mguRe-0000Qf-8A for submit@debbugs.gnu.org; Sat, 30 Oct 2021 15:55:14 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21176) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mguRb-0000QW-Pi for 51464@debbugs.gnu.org; Sat, 30 Oct 2021 15:55:13 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1635623708; cv=none; d=zohomail.com; s=zohoarc; b=Qk2sRV1+9mO2Xx15PHdk8Uh6cDH5bZwCWHCWh6mUN34gfMG+8kDMuTDj6DChcRnmlROvG8LpY/cdrzVgjWYIWfGIj6ni2zCICw5bemDzGlR3/wqsA64aqaJeLIymPy/oXUk8PuWlzobmUa3SBHNcpGWQ/apefbXszO4EX1wBIts= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1635623708; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:MIME-Version:Message-ID:Subject:To; bh=vBKNHTKuY9Tbjt7Myqxngl+IJIddGFct98P+3XW7fKo=; b=J/g9oHQt/1ODBqv9mtBgUCoSl7WFK+C4+dInSkNbfnybeWRQO2OjcbpRFOD20xRGez3nmnTydUnSzRQmhsKRsVQ6dssZoaaZs61nN0utw7zvrrz3OGYYCWqClc30BHeXErCiEmdEu6Kxj8AqxOkrX8ceMaAsfk94OvgEq/9Cp74= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1635623708; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:To:Cc:Subject:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=vBKNHTKuY9Tbjt7Myqxngl+IJIddGFct98P+3XW7fKo=; b=TNygVUJe/gY++V5uARUFyuX14dAp6cqM183Z8ma5n+uM760sig2Y2u3zQVWG1cfj dBOWV2GH+WoRt8KSx3MA8UKeQ45A4Qn5H+N7A19zfuHao9C6ShwhtZYGDFPY/aAlmud 680rNo9Sjg826sKgF4j+uKORbk1GTbctQO/Ia01c= Received: from localhost (p4fd5aecc.dip0.t-ipconnect.de [79.213.174.204]) by mx.zohomail.com with SMTPS id 1635623705344210.12979909544435; Sat, 30 Oct 2021 12:55:05 -0700 (PDT) User-agent: mu4e 1.6.6; emacs 27.2 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Add r-xnastring (bioconductor) and r-formattable (cran) Date: Sat, 30 Oct 2021 19:52:37 +0000 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87mtmqwane.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 51464 Cc: 51464@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, thanks for the patches! I was just about to apply them (with minor changes to indentation=20 and description) when I noticed this sentence: It also enables secondary structure prediction using RNAfold=20 from ViennaRNA ViennaRNA is known to be non-free software. Could you please=20 check the source code once again to be absolutely sure that the=20 GPLv2 does in fact apply to the full source code? I=E2=80=99ll apply r-formattable first. --=20 Ricardo From debbugs-submit-bounces@debbugs.gnu.org Sat Nov 27 15:25:15 2021 Received: (at 51464-done) by debbugs.gnu.org; 27 Nov 2021 20:25:15 +0000 Received: from localhost ([127.0.0.1]:34559 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mr4G2-0006xU-TG for submit@debbugs.gnu.org; Sat, 27 Nov 2021 15:25:15 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21133) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mr4G0-0006xF-Mh for 51464-done@debbugs.gnu.org; Sat, 27 Nov 2021 15:25:13 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1638044709; cv=none; d=zohomail.com; s=zohoarc; b=HndCqa/W+T63XiZpOv2essbGvxFBKQsaqiF7rGQqcB20fntrdG8AmcZCm6cvmqFL32fVb8gPhw0LfpeS3jT9RXi0xGqTiB2shr3+f28//deIlHYqYrKmp4Uu1uutIwUwSv5OrzWzcKEg6a0qLLRvQd0qtQ6bB1bioOXfQNYBt1s= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1638044709; h=Content-Type:Content-Transfer-Encoding:Date:From:MIME-Version:Message-ID:Subject:To; bh=irjLRIfjau1ii8SL3i3AVHDPHutyUjg3YnI8MZ+VdNo=; b=TGLpooU4+6hsMw+TfXfFnCDxhlxECz3dod7SU28GOnTrUVl9S06rbHMekkzdR3sYsB7a1wI6uNBIk7T9MB9QjfZC/0T1sNgP8k4zqtDze2vnADnM2WNofLlfcsxQrKnjQA94CbNBTaiFelC/YULdLb/EQm/mAOLg699Fzu5+EJ0= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1638044709; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:To:Subject:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=irjLRIfjau1ii8SL3i3AVHDPHutyUjg3YnI8MZ+VdNo=; b=HAeieGdDVhdhGzKD137N2eet2TT9tAKcgurZes4w40ruofSnJPE9t+Yp01Abnymb DpB2shNC3do+3B+ryimU6KHDSyTW/bbM75io8eW9e9isnZBDGNQ9jch4xoxpF7mB4Is Ouwcmay12V8sfktgbYe2ajBghi2HNlNCBYcMiFz4= Received: from localhost (p4fd5a75b.dip0.t-ipconnect.de [79.213.167.91]) by mx.zohomail.com with SMTPS id 1638044707146887.7459417964884; Sat, 27 Nov 2021 12:25:07 -0800 (PST) User-agent: mu4e 1.6.10; emacs 28.0.50 From: Ricardo Wurmus To: 51464-done@debbugs.gnu.org Subject: Add r-xnastring (bioconductor) and r-formattable (cran) Date: Sat, 27 Nov 2021 21:23:42 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <871r31pcrk.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 51464-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) The r-xnastring package includes source code of ViennaRNA, which=20 is not free software. See also:=20 https://github.com/ViennaRNA/ViennaRNA/issues/97 I don=E2=80=99t think we can add r-xnastring, so I=E2=80=99m closing this. --=20 Ricardo From unknown Thu Jun 19 14:07:04 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sun, 26 Dec 2021 12:24:07 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator