GNU bug report logs - #51461
[PATCH] gnu: Add r-zellkonverter.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#51461: closed ([PATCH] gnu: Add r-zellkonverter.)
Date: Mon, 01 Nov 2021 22:25:01 +0000

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Your message dated Mon, 01 Nov 2021 22:23:21 +0000
with message-id <87mtmntsze.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add r-zellkonverter.
has caused the debbugs.gnu.org bug report #51461,
regarding [PATCH] gnu: Add r-zellkonverter.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
51461: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=51461
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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: rekado <at> elephly.net, Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-zellkonverter.
Date: Thu, 28 Oct 2021 17:12:04 +0200

* gnu/packages/bioconductor.scm (r-zellkonverter): New variable.
---
 gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 90a0e1f288..ce3a4badce 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4682,6 +4682,38 @@ (define-public r-zlibbioc
 libraries for systems that do not have these available via other means.")
     (license license:artistic2.0)))
 
+(define-public r-zellkonverter
+  (package
+    (name "r-zellkonverter")
+    (version "1.4.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "zellkonverter" version))
+       (sha256
+        (base32 "1ihp2f23lpdfgf3qliy22vrq8czm353hyhqf74r5r712190k6pgg"))))
+    (properties `((upstream-name . "zellkonverter")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-basilisk" ,r-basilisk)
+       ("r-cli" ,r-cli)
+       ("r-delayedarray" ,r-delayedarray)
+       ("r-matrix" ,r-matrix)
+       ("r-reticulate" ,r-reticulate)
+       ("r-s4vectors" ,r-s4vectors)
+       ("r-singlecellexperiment" ,r-singlecellexperiment)
+       ("r-summarizedexperiment" ,r-summarizedexperiment)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/theislab/zellkonverter")
+    (synopsis "Conversion between AnnData and single-cell experiments objects")
+    (description
+     "This package provides methods to convert between Python AnnData objects
+and SingleCellExperiment objects.  These are primarily intended for use by
+downstream Bioconductor packages that wrap Python methods for single-cell data
+analysis.  It also includes functions to read and write H5AD files used for
+saving AnnData objects to disk.")
+    (license license:expat)))
+
 (define-public r-geneplotter
   (package
     (name "r-geneplotter")
-- 
2.33.0

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 51461-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-zellkonverter.
Date: Mon, 01 Nov 2021 22:23:21 +0000

Applied and pushed to the “r-updates” branch, which will shortly 
be merged into the “master” branch.

-- 
Ricardo

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