From debbugs-submit-bounces@debbugs.gnu.org Thu Oct 28 11:13:00 2021 Received: (at submit) by debbugs.gnu.org; 28 Oct 2021 15:13:00 +0000 Received: from localhost ([127.0.0.1]:52926 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mg75Q-0003op-3G for submit@debbugs.gnu.org; Thu, 28 Oct 2021 11:13:00 -0400 Received: from lists.gnu.org ([209.51.188.17]:45894) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mg75L-0003of-RT for submit@debbugs.gnu.org; Thu, 28 Oct 2021 11:12:57 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:40754) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mg75L-0000GT-F2 for guix-patches@gnu.org; Thu, 28 Oct 2021 11:12:55 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:54581) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mg757-0000KO-7m for guix-patches@gnu.org; Thu, 28 Oct 2021 11:12:54 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 9D23B300106; Thu, 28 Oct 2021 17:12:23 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1635433943; x=1637248344; bh=GrtpmfBgOVQ0ItIn9MEXNXQdY4y71DtaW7anwPptB6E=; b=kXKq8urDFfwi aXfJVZykj+R6wiI1lZYm6IazUrtgJqZkmhL9NiUGx/ge8tZoxl2ZOayIRMT2xZGI PQh8BBsu/BjaBsWADxCl6uDKVQzIFmkNFIbU1IvlYDBNUZFJL8epNZ26Hab+p8v5 mvDlHbzE2OeZC9z2jKHk/Nj0CqmgKX4= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id uau1eHdGKWEo; Thu, 28 Oct 2021 17:12:23 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS; Thu, 28 Oct 2021 17:12:23 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2308.15; Thu, 28 Oct 2021 17:12:22 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-zellkonverter. Date: Thu, 28 Oct 2021 17:12:04 +0200 Message-ID: <20211028151204.23167-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.33.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-8.6.1018-26496.000 X-TM-AS-Result: No-10--2.724900-8.000000 X-TMASE-MatchedRID: xPvPRJicGCQsaaYlMvaOHAPZZctd3P4Bzv7O27to65Hhbc38imJFQWim Izb1qb1PRRa406V/YwwKl5/g/W44hrJJ3aMCJ9Hhz5r5y9mouSAqSb58EIanQJf69fQNowiyiMD 6wB/IizJ05yZ49kHVQYn0O0NmxwZcoGg41PayguRqZ6OipRp3egnYwtywxoaBXum7C/z4OuoKVW Bv5DfSi0nJmQjzpbL45U1Na/wV3XrQ3sOMB3Fk1OLzNWBegCW2wgn7iDBesS3CttcwYNipXw2y0 JeZ/zsccDYDfzGdpRWAc6iA1BeMEEhxrW1lc0K0/XwC2pQeCWsBUyzmmPIVQPas6TFIUX33QO2F mK1q1B+bKH8vxmdSaZa9FqNDarg0xsbRsxJFgNYWGegpbh/sx/VzxEkh5LVAWYqZ+nM0cw0= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.724900-8.000000 X-TMASE-Version: SMEX-14.0.0.3092-8.6.1018-26496.000 X-TM-SNTS-SMTP: 65E19B150EDCD2459031B2D0B0D3FF3F23F6DAD0F6160EA577B8C72E048CC3BC2000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: rekado@elephly.net, =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-zellkonverter): New variable. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 90a0e1f288..ce3a4badce 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4682,6 +4682,38 @@ (define-public r-zlibbioc libraries for systems that do not have these available via other means.") (license license:artistic2.0))) +(define-public r-zellkonverter + (package + (name "r-zellkonverter") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "zellkonverter" version)) + (sha256 + (base32 "1ihp2f23lpdfgf3qliy22vrq8czm353hyhqf74r5r712190k6pgg")))) + (properties `((upstream-name . "zellkonverter"))) + (build-system r-build-system) + (propagated-inputs + `(("r-basilisk" ,r-basilisk) + ("r-cli" ,r-cli) + ("r-delayedarray" ,r-delayedarray) + ("r-matrix" ,r-matrix) + ("r-reticulate" ,r-reticulate) + ("r-s4vectors" ,r-s4vectors) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/theislab/zellkonverter") + (synopsis "Conversion between AnnData and single-cell experiments objects") + (description + "This package provides methods to convert between Python AnnData objects +and SingleCellExperiment objects. These are primarily intended for use by +downstream Bioconductor packages that wrap Python methods for single-cell data +analysis. It also includes functions to read and write H5AD files used for +saving AnnData objects to disk.") + (license license:expat))) + (define-public r-geneplotter (package (name "r-geneplotter") -- 2.33.0 From debbugs-submit-bounces@debbugs.gnu.org Mon Nov 01 18:24:19 2021 Received: (at 51461-done) by debbugs.gnu.org; 1 Nov 2021 22:24:19 +0000 Received: from localhost ([127.0.0.1]:36293 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mhfj1-0002Ly-G3 for submit@debbugs.gnu.org; Mon, 01 Nov 2021 18:24:19 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21170) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mhfix-0002Ll-U7 for 51461-done@debbugs.gnu.org; Mon, 01 Nov 2021 18:24:17 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1635805452; cv=none; d=zohomail.com; s=zohoarc; b=H0wl2PrXtSLRzTTGhz44wsMnAVJsZ4nRjGzuIzvb84vI8qcc4cIRQGoHY9ehp9ldUgXdnTRGancANN1oAnf1I/19zC1z0tNeqo+5aOhppyHotEpHkIa47VHqdmHYQGUhfLpareyOS12KJKyeUEc9lrkDSUFZsZthn89A3Ez1qsA= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1635805452; h=Content-Type:Content-Transfer-Encoding:Date:From:MIME-Version:Message-ID:Subject:To; bh=EBIYoYFHVRN3ilHzZIAkLpSCevtXf1/AF5vP64YOJVE=; b=gvhbjRGrooYi3Kwisukk9ejbCqOTz9Lq/NwUEfV0vsDrmlmep0xG9LGEfYdVkGTrWlLqAEH/hygmbTa85dQYmd206Ycg/KEL2rU/VnyEZ4aTxe7ApNQ8qbsq1W+INViIkxggxLp39kZkAJ/Xa134BAtoSPyJvD+sJDwvkEonJLs= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1635805452; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:To:Subject:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=EBIYoYFHVRN3ilHzZIAkLpSCevtXf1/AF5vP64YOJVE=; b=ErublDiUisq3tg7Qb9gcqdMbl1mClBFD6aMY/qQOC7dPdA0a/7OFP00nVKGZHLPn STItjKqiQ30+j6ndYnrkD+Fkx39JBPKgFMZJKs/EUHrYkcBxf4Jis4YSGjOl+1ZlHe9 SY7YLyChJSZVmqwMSLMqFvyBREAGBB1kdyA3vn3U= Received: from localhost (p54ad4f5b.dip0.t-ipconnect.de [84.173.79.91]) by mx.zohomail.com with SMTPS id 1635805448540185.96515634670754; Mon, 1 Nov 2021 15:24:08 -0700 (PDT) User-agent: mu4e 1.6.6; emacs 27.2 From: Ricardo Wurmus To: 51461-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-zellkonverter. Date: Mon, 01 Nov 2021 22:23:21 +0000 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87mtmntsze.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 51461-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied and pushed to the =E2=80=9Cr-updates=E2=80=9D branch, which will sh= ortly=20 be merged into the =E2=80=9Cmaster=E2=80=9D branch. --=20 Ricardo From unknown Fri Jun 20 07:24:54 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Tue, 30 Nov 2021 12:24:06 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator