GNU bug report logs - #50570
[PATCH 0/2] R packages

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From: zimoun <zimon.toutoune <at> gmail.com>
To: 50570 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [bug#50570] [PATCH 1/2] gnu: Add r-simplifyenrichment.
Date: Mon, 13 Sep 2021 16:20:27 +0200

* gnu/packages/bioconductor.scm (r-simplifyenrichment): New variable.
---
 gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 25202410e5..e59ba07d23 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4236,6 +4236,46 @@ purposes.  The package also contains legacy support for early single-end,
 ungapped alignment formats.")
     (license license:artistic2.0)))
 
+(define-public r-simplifyenrichment
+  (package
+    (name "r-simplifyenrichment")
+    (version "1.2.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "simplifyEnrichment" version))
+       (sha256
+        (base32
+         "0rqa414kvyjjmj4932zk39rqa14z13b57rkrxdrf16jmq2r437vh"))))
+    (properties
+     `((upstream-name . "simplifyEnrichment")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)
+       ("r-biocgenerics" ,r-biocgenerics)
+       ("r-circlize" ,r-circlize)
+       ("r-clue" ,r-clue)
+       ("r-cluster" ,r-cluster)
+       ("r-complexheatmap" ,r-complexheatmap)
+       ("r-digest" ,r-digest)
+       ("r-getoptlong" ,r-getoptlong)
+       ("r-go-db" ,r-go-db)
+       ("r-gosemsim" ,r-gosemsim)
+       ("r-matrix" ,r-matrix)
+       ("r-org-hs-eg-db" ,r-org-hs-eg-db)
+       ("r-proxyc" ,r-proxyc)
+       ("r-slam" ,r-slam)
+       ("r-tm" ,r-tm)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/jokergoo/simplifyEnrichment")
+    (synopsis "Simplify Functional Enrichment Results")
+    (description "This package provides a new clustering algorithm, binary
+cut, for clustering similarity matrices of functional terms is implemeted in
+this package.  It also provideds functionalities for visualizing, summarizing
+and comparing the clusterings.")
+    (license license:expat)))
+
+
 (define-public r-trajectoryutils
   (package
     (name "r-trajectoryutils")
-- 
2.32.0

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