GNU bug report logs - #50570
[PATCH 0/2] R packages

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From: zimoun <zimon.toutoune <at> gmail.com>
To: 50570 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [bug#50570] [PATCH 2/2] gnu: Add r-presto.
Date: Mon, 13 Sep 2021 16:20:28 +0200

* gnu/packages/bioinformatics.scm (r-presto): New variable.
---
 gnu/packages/bioinformatics.scm | 34 +++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c3ab0ce354..647feff9ec 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21,6 +21,7 @@
 ;;; Copyright © 2020 Bonface Munyoki Kilyungi <bonfacemunyoki <at> gmail.com>
 ;;; Copyright © 2021 Tim Howes <timhowes <at> lavabit.com>
 ;;; Copyright © 2021 Hong Li <hli <at> mdc-berlin.de>
+;;; Copyright © 2021 Simon Tournier <zimon.toutoune <at> gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -7417,6 +7418,39 @@ sequence.")
     (supported-systems '("i686-linux" "x86_64-linux"))
     (license license:bsd-3)))
 
+(define-public r-presto
+  (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
+        (revision "0"))
+    (package
+      (name "r-presto")
+      (version (git-version "1.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/immunogenomics/presto")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1c3fmag4r4p2lvbvxlxyck9dvfw1prbwcl9665mmlx4a35750hk8"))))
+      (properties `((upstream . "presto")))
+      (build-system r-build-system)
+      (propagated-inputs
+       `(("r-data-table" ,r-data-table)
+         ("r-deseq2" ,r-deseq2)
+         ("r-dplyr" ,r-dplyr)
+         ("r-matrix" ,r-matrix)
+         ("r-rcpp" ,r-rcpp)
+         ("r-rcpparmadillo" ,r-rcpparmadillo)
+         ("r-reshape2" ,r-reshape2)
+         ("r-rlang" ,r-rlang)
+         ("r-tidyr" ,r-tidyr)))
+      (home-page "https://github.com/immunogenomics/presto")
+      (synopsis "Fast Functions for Differential Expression using Wilcox and AUC")
+      (description "This package performs a fast Wilcoxon rank sum test and
+auROC analysis.")
+      (license license:gpl3))))
+
 (define-public r-snapatac
   (package
     (name "r-snapatac")
-- 
2.32.0

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