From unknown Sun Jul 27 06:47:11 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#50570] [PATCH 0/2] R packages Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 13 Sep 2021 14:19:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 50570 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50570@debbugs.gnu.org Cc: zimoun , rekado@elephly.net X-Debbugs-Original-To: guix-patches@gnu.org X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by submit@debbugs.gnu.org id=B.163154271832090 (code B ref -1); Mon, 13 Sep 2021 14:19:01 +0000 Received: (at submit) by debbugs.gnu.org; 13 Sep 2021 14:18:38 +0000 Received: from localhost ([127.0.0.1]:46530 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmn8-0008LW-Fm for submit@debbugs.gnu.org; Mon, 13 Sep 2021 10:18:38 -0400 Received: from lists.gnu.org ([209.51.188.17]:52546) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmn7-0008LI-HE for submit@debbugs.gnu.org; Mon, 13 Sep 2021 10:18:37 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:49150) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mPmn2-0003yG-Pi for guix-patches@gnu.org; Mon, 13 Sep 2021 10:18:37 -0400 Received: from mail-wm1-x335.google.com ([2a00:1450:4864:20::335]:35389) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mPmmv-0003DM-AH for guix-patches@gnu.org; Mon, 13 Sep 2021 10:18:32 -0400 Received: by mail-wm1-x335.google.com with SMTP id r128-20020a1c4486000000b003065f0bc631so2456354wma.0 for ; Mon, 13 Sep 2021 07:18:21 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=+CiwnywKEJdpz0+VZZyx6GUYWhhmB4pTH0/AGXp8HhA=; b=AJRGFPNarXm+zV+EAWlyiSp5Esa9SwjP88ZKDmj4Qj9/3zvqfUCNVRvZ2f+YK0v6iM H1pTGD7cZvDB2oUPY+7LYdfLiQH52EKPEeS1BYsq2hc04zS6g/rEooXmHlAlr/p3xNaQ oR//U5/syRQFjGw+pof029z1qZ0Nx17geVLtkRLhR4yXblEhscwKDmsNbprRcN5zsjZr 7Mhe4P1bm/Mn/noXcViHAzXeED/xpM47Oc/Fj+7yPjttt0NJxny7ECwfnK7PbPlQmsBS Ppa7aOIKufBbdKmAmOH20OoQlYQ5iOiuxaB8qN02DbFXMxPLijG5lslVUNOa/tcYBIVC 6vKA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=+CiwnywKEJdpz0+VZZyx6GUYWhhmB4pTH0/AGXp8HhA=; b=3ASqSaesQ0zTzKEMmSTBy/O/U381x0jKOn55V7/bH6TOGUSiJTkbMj5yKJQgL4dkiQ riP9Gr4ZdKEvINL5PHpeLsu1nwLm8HzqE8/WkyqqkpaDVnCBOrc8gjyCh31x3ATzfyt5 Ub6uC4zOC+NP/exig7IkWf1mf7n1dD9CVDU7NFTAJ7HvxZxBUeyVOzu0FNb34qViGkaF bHPhfEQrGTs+FC6v4dtrph6xGp98HmywpGVOag4eYP/asI6CtW2MnP7WROsINhwStj6Y wJWuRxF1gMJbKlDNXq0/D40/0DjWcZTrMJgd8IH2JFdbZnWSdts1eMm1XdD+v8x4odoj rtkw== X-Gm-Message-State: AOAM531YlwvxYWkZImMiQ+9a2VYYF95P2Ta6U/0MFhNatzeaaulgBoAn ackvC7+WtRjAwjVkTkR1lUMLeYex3a4= X-Google-Smtp-Source: ABdhPJzh8DFoDOP0s9e5sRoTEbKBZKfF8Uz/C0PJFMQnn6bULmToFVhMyJZQO4s8DLv4iFkm9viWXA== X-Received: by 2002:a1c:f308:: with SMTP id q8mr2411658wmq.153.1631542700553; Mon, 13 Sep 2021 07:18:20 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.117]) by smtp.gmail.com with ESMTPSA id z6sm7079118wmp.1.2021.09.13.07.18.20 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 13 Sep 2021 07:18:20 -0700 (PDT) From: zimoun Date: Mon, 13 Sep 2021 16:18:12 +0200 Message-Id: <20210913141812.521898-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.32.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=2a00:1450:4864:20::335; envelope-from=zimon.toutoune@gmail.com; helo=mail-wm1-x335.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) Hi, Trivial addition. The package r-presto does not have a tag version, hence the commit; they say in README about CRAN but the archive does not contain it, or I miss it. All the best, simon zimoun (2): gnu: Add r-simplifyenrichment. gnu: Add r-presto. gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 34 ++++++++++++++++++++++++++++ 2 files changed, 74 insertions(+) base-commit: 53f54d4aa252fed425180641f27094600522c4f1 -- 2.32.0 From unknown Sun Jul 27 06:47:11 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#50570] [PATCH 1/2] gnu: Add r-simplifyenrichment. References: <20210913141812.521898-1-zimon.toutoune@gmail.com> In-Reply-To: <20210913141812.521898-1-zimon.toutoune@gmail.com> Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 13 Sep 2021 14:21:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 50570 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50570@debbugs.gnu.org Cc: zimoun Received: via spool by 50570-submit@debbugs.gnu.org id=B50570.163154283732326 (code B ref 50570); Mon, 13 Sep 2021 14:21:01 +0000 Received: (at 50570) by debbugs.gnu.org; 13 Sep 2021 14:20:37 +0000 Received: from localhost ([127.0.0.1]:46543 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmp3-0008PK-Gf for submit@debbugs.gnu.org; Mon, 13 Sep 2021 10:20:37 -0400 Received: from mail-wr1-f53.google.com ([209.85.221.53]:40656) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmp2-0008P1-3t for 50570@debbugs.gnu.org; Mon, 13 Sep 2021 10:20:36 -0400 Received: by mail-wr1-f53.google.com with SMTP id q26so14978645wrc.7 for <50570@debbugs.gnu.org>; Mon, 13 Sep 2021 07:20:36 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=ly/QNZgEh14QPgEdUe6C8AVzWdV9pfMVb+PmwiHdhBk=; b=q7tKMzESQczPkVuhsi9Aj8y0ZYp/neqvQ11/2AKI/+4xyT109W7N/8ufahxVHhYLgw g6R8Dt9nIm/BJChr9vWS4MDSpYMS6sZKclIVZhwGq2abtKXBWDbB94aAewkw3watVahl nZNJiCuBiK8wJ2i8TxR1brITAqxGxdy+lhBcMMNDRMX87BFKCMjNwxMXXqgPHFiVQ6Ad cOzeZIzAjGtBJ707CeDTso8C9jV3kUfFhYKwVoHvpgMGqQH+0OJQywM5etCjqtLMXJTm aByLTSUw/jVS2rAjrWf4s+qhuOO1Q58YFEX2bSjysNbbJe1yZb1jI70WtyZ0LjCvJwgb VL0g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=ly/QNZgEh14QPgEdUe6C8AVzWdV9pfMVb+PmwiHdhBk=; b=cP4lUuw+6DxdOmEe7GQmlhBPfiElEftiTMCgmd8n7KORGT4lKyBHba8WwCqobmP7dS NIjodvw5Ihon39Q6BxUzFb4Gw69lne6B3ikvbPEAyBaKvqRQiDHj6T3HPW/7D57juLS6 g24WFYj5+gy+hzeWVm/5FQgeJ79W8THW3dK1duESsRtLTMxEL1ZK9xE5LDTRwQjS/+mz fx2FcEARdqAslPlR536mq110UGrPmzOGGVyY/4DDYAsQ1TyzE3iGbOOv+15NNrVTi58P TJJ8UO9Yq73y4qrxHRVgMcvsv/ikbZAj0rxLpvICt/WNZDYC6JIpttKe/XhzIKuW6Av/ MriA== X-Gm-Message-State: AOAM530Hb0rfgWm9dG9RWZHhTRp/a1WKMMt6WM6ckmkpMMjSRM8NmXaG 6PTK4PD52ROcQAOrxiyZmc96jYcAIJ0= X-Google-Smtp-Source: ABdhPJw46uHWPc36Agl1HGEdkX7pS+36LWDHmiYANRXqWcYWqXHU+ZGotPrtuM8iUOnokEu5SXlX/g== X-Received: by 2002:adf:d1a4:: with SMTP id w4mr12953379wrc.233.1631542830329; Mon, 13 Sep 2021 07:20:30 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.117]) by smtp.gmail.com with ESMTPSA id j27sm1429380wms.6.2021.09.13.07.20.29 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 13 Sep 2021 07:20:30 -0700 (PDT) From: zimoun Date: Mon, 13 Sep 2021 16:20:27 +0200 Message-Id: <20210913142028.522087-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.32.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioconductor.scm (r-simplifyenrichment): New variable. --- gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 25202410e5..e59ba07d23 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4236,6 +4236,46 @@ purposes. The package also contains legacy support for early single-end, ungapped alignment formats.") (license license:artistic2.0))) +(define-public r-simplifyenrichment + (package + (name "r-simplifyenrichment") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "simplifyEnrichment" version)) + (sha256 + (base32 + "0rqa414kvyjjmj4932zk39rqa14z13b57rkrxdrf16jmq2r437vh")))) + (properties + `((upstream-name . "simplifyEnrichment"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biocgenerics" ,r-biocgenerics) + ("r-circlize" ,r-circlize) + ("r-clue" ,r-clue) + ("r-cluster" ,r-cluster) + ("r-complexheatmap" ,r-complexheatmap) + ("r-digest" ,r-digest) + ("r-getoptlong" ,r-getoptlong) + ("r-go-db" ,r-go-db) + ("r-gosemsim" ,r-gosemsim) + ("r-matrix" ,r-matrix) + ("r-org-hs-eg-db" ,r-org-hs-eg-db) + ("r-proxyc" ,r-proxyc) + ("r-slam" ,r-slam) + ("r-tm" ,r-tm))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/jokergoo/simplifyEnrichment") + (synopsis "Simplify Functional Enrichment Results") + (description "This package provides a new clustering algorithm, binary +cut, for clustering similarity matrices of functional terms is implemeted in +this package. It also provideds functionalities for visualizing, summarizing +and comparing the clusterings.") + (license license:expat))) + + (define-public r-trajectoryutils (package (name "r-trajectoryutils") -- 2.32.0 From unknown Sun Jul 27 06:47:11 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#50570] [PATCH 2/2] gnu: Add r-presto. Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 13 Sep 2021 14:21:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 50570 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50570@debbugs.gnu.org Cc: zimoun Received: via spool by 50570-submit@debbugs.gnu.org id=B50570.163154284132337 (code B ref 50570); Mon, 13 Sep 2021 14:21:02 +0000 Received: (at 50570) by debbugs.gnu.org; 13 Sep 2021 14:20:41 +0000 Received: from localhost ([127.0.0.1]:46545 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmp6-0008PV-PE for submit@debbugs.gnu.org; Mon, 13 Sep 2021 10:20:41 -0400 Received: from mail-wr1-f45.google.com ([209.85.221.45]:38774) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmp2-0008P2-Bf for 50570@debbugs.gnu.org; Mon, 13 Sep 2021 10:20:37 -0400 Received: by mail-wr1-f45.google.com with SMTP id u16so14987532wrn.5 for <50570@debbugs.gnu.org>; Mon, 13 Sep 2021 07:20:36 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=BNx8u5VoWHd6V2my4Rnd5c2LXZYMXWxcv+SHTttgd+o=; b=VW2673wFC2ZQdkEHAmLX0WXsZFqb5OfYMQ9rt+RygMbZ1ZclTW7IUwtR/DJRazhLil tBV8X8vCobzLTZ6Ctzpvys/8fbyaVRr6Bh77xk1cLh1Az4drdqgIB767q+uJ7+/dKy9G 7IMluIx6BfA/QHOahe+mUOKngy4ZlJK3nc9m0Ucxcpze2rN9EcLtT67HRNxbcekcnHZf 1QyfL1Vkb6xTsOHukNVxd9iXWNo8Tem9B0v3EPeqsBShwWaeNwbtDjwGcma/aNrfxH5h ND2aT8JN10G3jsCmrWTwd7AD7RzXXHiW/1h/OSsYSz+4kahJVZgPP2aLE18O/hTSPlgU tQWQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=BNx8u5VoWHd6V2my4Rnd5c2LXZYMXWxcv+SHTttgd+o=; b=Imy/7qwYH7JUd7yK0aOeI22cBzlBISlK1jw+gW+Xo3mj1rlNypfzA4kpfOHYcyfrM/ xXbej7omisH9v+i0V/G9YKa36Ljr4FzWUEl8W21+vWSlSYFnlJSu9qZYxldqAn9Y1IvB kQBxHqBQOlYQqvlFOYKxt5s66NlDKO2V9YzV2PSIuBw/7Msu3beZQwrkLKejSPgtYt2I z3cG5wNBFjHL2wYi9tyvQ4OFO3ClYp+2L20p0sD40Tk5/bi9WE2MIgBW3phulqS0Ir2C VuZ6YJaaXQI6a0lzaNIEjjIT6OgCWDTVNTSYnZQ+cVBGTpDNBzI+qqU0dXjTSVmhngF0 Z7lg== X-Gm-Message-State: AOAM533m0YE0bQo5OoccWY1+qCHCgRIV9lLvuwTgG1OxdHMIyhgwMwDm UMzi+mNK4YKMyGqViey2pu2EyF2kkpM= X-Google-Smtp-Source: ABdhPJwfcM4ERb/I00P/lmETRXgiJHl86lCMqsrjV52emwCe8jfpxOo4VY9O4EDYHEX7U9/IwsP/og== X-Received: by 2002:a5d:4f02:: with SMTP id c2mr13249262wru.10.1631542830760; Mon, 13 Sep 2021 07:20:30 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.117]) by smtp.gmail.com with ESMTPSA id j27sm1429380wms.6.2021.09.13.07.20.30 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 13 Sep 2021 07:20:30 -0700 (PDT) From: zimoun Date: Mon, 13 Sep 2021 16:20:28 +0200 Message-Id: <20210913142028.522087-2-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.32.0 In-Reply-To: <20210913142028.522087-1-zimon.toutoune@gmail.com> References: <20210913142028.522087-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioinformatics.scm (r-presto): New variable. --- gnu/packages/bioinformatics.scm | 34 +++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c3ab0ce354..647feff9ec 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -21,6 +21,7 @@ ;;; Copyright © 2020 Bonface Munyoki Kilyungi ;;; Copyright © 2021 Tim Howes ;;; Copyright © 2021 Hong Li +;;; Copyright © 2021 Simon Tournier ;;; ;;; This file is part of GNU Guix. ;;; @@ -7417,6 +7418,39 @@ sequence.") (supported-systems '("i686-linux" "x86_64-linux")) (license license:bsd-3))) +(define-public r-presto + (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad") + (revision "0")) + (package + (name "r-presto") + (version (git-version "1.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/immunogenomics/presto") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1c3fmag4r4p2lvbvxlxyck9dvfw1prbwcl9665mmlx4a35750hk8")))) + (properties `((upstream . "presto"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-deseq2" ,r-deseq2) + ("r-dplyr" ,r-dplyr) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-reshape2" ,r-reshape2) + ("r-rlang" ,r-rlang) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/immunogenomics/presto") + (synopsis "Fast Functions for Differential Expression using Wilcox and AUC") + (description "This package performs a fast Wilcoxon rank sum test and +auROC analysis.") + (license license:gpl3)))) + (define-public r-snapatac (package (name "r-snapatac") -- 2.32.0 From unknown Sun Jul 27 06:47:11 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: zimoun Subject: bug#50570: closed (Re: [bug#50570] [PATCH 0/2] R packages) Message-ID: References: <87y27rf1ja.fsf@elephly.net> <20210913141812.521898-1-zimon.toutoune@gmail.com> X-Gnu-PR-Message: they-closed 50570 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 50570@debbugs.gnu.org Date: Mon, 20 Sep 2021 20:14:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1632168842-19163-1" This is a multi-part message in MIME format... ------------=_1632168842-19163-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #50570: [PATCH 0/2] R packages which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 50570@debbugs.gnu.org. --=20 50570: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D50570 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1632168842-19163-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 50570-done) by debbugs.gnu.org; 20 Sep 2021 20:13:59 +0000 Received: from localhost ([127.0.0.1]:44131 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mSPfq-0004yk-Pa for submit@debbugs.gnu.org; Mon, 20 Sep 2021 16:13:58 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21173) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mSPfo-0004yV-BM for 50570-done@debbugs.gnu.org; Mon, 20 Sep 2021 16:13:57 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1632168831; cv=none; d=zohomail.com; s=zohoarc; b=TEZMG0VFKIMev2dvWJLZ4VO+fPE6Pp5gQMg2eWHKze2OYfcJfvVABMjKAP0rizZ+3hHrJ8KBpNAHkZ0ZKS9XyQ1q4AgncIxvoqdKnmwrNEYx4WTpGBu8bJhrfnW0ZXUvh9B1R/Twui5JtbYU+BytN/i+ANcCrvBCc1w+VqwzZdk= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1632168831; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=rkqFdX79+1SYvcOY8SZxqkya6SBSBSYrKwe8db2qtr8=; b=ZGLoZ6+q3J8XvvetfXlrqa9DSJwY5hoF3HHdqQv7RJdwEpHGMw48GYzZhEh0P6XZrgiK4Ncr2Hffiz418YOtn52BfbZKQlDwEeR2f/mzLHHCDcDyyWlSmEfbDZDENa8gvPjAfG4c7w+foDi30DLry5/BLUpqQY4WgFP2pUMAHIA= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1632168831; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=rkqFdX79+1SYvcOY8SZxqkya6SBSBSYrKwe8db2qtr8=; b=bZyJAW6/4WfT6BNu8W9Tb+nDvdhW1YTlC2N2+eiLJ4pkhEcnJaQ5s5UI1q9NyiAl gc7pQSvTEASQGdRQfnP41lxqNbI+X0p8YiVRTr+oLSxsRy+rYeitGbYOQeECWlRZnzM d03MYXPtaMZVAEFis9reoNdOSA+7LO868bn+cG9c= Received: from localhost (p54ad4a6a.dip0.t-ipconnect.de [84.173.74.106]) by mx.zohomail.com with SMTPS id 1632168828205333.0759696984195; Mon, 20 Sep 2021 13:13:48 -0700 (PDT) References: <20210913141812.521898-1-zimon.toutoune@gmail.com> User-agent: mu4e 1.4.15; emacs 27.2 From: Ricardo Wurmus To: zimoun Subject: Re: [bug#50570] [PATCH 0/2] R packages In-reply-to: <20210913141812.521898-1-zimon.toutoune@gmail.com> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Mon, 20 Sep 2021 22:13:45 +0200 Message-ID: <87y27rf1ja.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 50570-done Cc: 50570-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thank you for the patches. Pushed to the =E2=80=9Cmaster=E2=80=9D branch w= ith=20 commit f80824fe0997f3e5d73ef16b8d42d248ce31cc69. --=20 Ricardo ------------=_1632168842-19163-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 13 Sep 2021 14:18:38 +0000 Received: from localhost ([127.0.0.1]:46530 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmn8-0008LW-Fm for submit@debbugs.gnu.org; Mon, 13 Sep 2021 10:18:38 -0400 Received: from lists.gnu.org ([209.51.188.17]:52546) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmn7-0008LI-HE for submit@debbugs.gnu.org; Mon, 13 Sep 2021 10:18:37 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:49150) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mPmn2-0003yG-Pi for guix-patches@gnu.org; Mon, 13 Sep 2021 10:18:37 -0400 Received: from mail-wm1-x335.google.com ([2a00:1450:4864:20::335]:35389) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mPmmv-0003DM-AH for guix-patches@gnu.org; Mon, 13 Sep 2021 10:18:32 -0400 Received: by mail-wm1-x335.google.com with SMTP id r128-20020a1c4486000000b003065f0bc631so2456354wma.0 for ; Mon, 13 Sep 2021 07:18:21 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=+CiwnywKEJdpz0+VZZyx6GUYWhhmB4pTH0/AGXp8HhA=; b=AJRGFPNarXm+zV+EAWlyiSp5Esa9SwjP88ZKDmj4Qj9/3zvqfUCNVRvZ2f+YK0v6iM H1pTGD7cZvDB2oUPY+7LYdfLiQH52EKPEeS1BYsq2hc04zS6g/rEooXmHlAlr/p3xNaQ oR//U5/syRQFjGw+pof029z1qZ0Nx17geVLtkRLhR4yXblEhscwKDmsNbprRcN5zsjZr 7Mhe4P1bm/Mn/noXcViHAzXeED/xpM47Oc/Fj+7yPjttt0NJxny7ECwfnK7PbPlQmsBS Ppa7aOIKufBbdKmAmOH20OoQlYQ5iOiuxaB8qN02DbFXMxPLijG5lslVUNOa/tcYBIVC 6vKA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=+CiwnywKEJdpz0+VZZyx6GUYWhhmB4pTH0/AGXp8HhA=; b=3ASqSaesQ0zTzKEMmSTBy/O/U381x0jKOn55V7/bH6TOGUSiJTkbMj5yKJQgL4dkiQ riP9Gr4ZdKEvINL5PHpeLsu1nwLm8HzqE8/WkyqqkpaDVnCBOrc8gjyCh31x3ATzfyt5 Ub6uC4zOC+NP/exig7IkWf1mf7n1dD9CVDU7NFTAJ7HvxZxBUeyVOzu0FNb34qViGkaF bHPhfEQrGTs+FC6v4dtrph6xGp98HmywpGVOag4eYP/asI6CtW2MnP7WROsINhwStj6Y wJWuRxF1gMJbKlDNXq0/D40/0DjWcZTrMJgd8IH2JFdbZnWSdts1eMm1XdD+v8x4odoj rtkw== X-Gm-Message-State: AOAM531YlwvxYWkZImMiQ+9a2VYYF95P2Ta6U/0MFhNatzeaaulgBoAn ackvC7+WtRjAwjVkTkR1lUMLeYex3a4= X-Google-Smtp-Source: ABdhPJzh8DFoDOP0s9e5sRoTEbKBZKfF8Uz/C0PJFMQnn6bULmToFVhMyJZQO4s8DLv4iFkm9viWXA== X-Received: by 2002:a1c:f308:: with SMTP id q8mr2411658wmq.153.1631542700553; Mon, 13 Sep 2021 07:18:20 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.117]) by smtp.gmail.com with ESMTPSA id z6sm7079118wmp.1.2021.09.13.07.18.20 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 13 Sep 2021 07:18:20 -0700 (PDT) From: zimoun To: guix-patches@gnu.org Subject: [PATCH 0/2] R packages Date: Mon, 13 Sep 2021 16:18:12 +0200 Message-Id: <20210913141812.521898-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.32.0 MIME-Version: 1.0 X-Debbugs-CC: rekado@elephly.net Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=2a00:1450:4864:20::335; envelope-from=zimon.toutoune@gmail.com; helo=mail-wm1-x335.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) Hi, Trivial addition. The package r-presto does not have a tag version, hence the commit; they say in README about CRAN but the archive does not contain it, or I miss it. All the best, simon zimoun (2): gnu: Add r-simplifyenrichment. gnu: Add r-presto. gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 34 ++++++++++++++++++++++++++++ 2 files changed, 74 insertions(+) base-commit: 53f54d4aa252fed425180641f27094600522c4f1 -- 2.32.0 ------------=_1632168842-19163-1--