From debbugs-submit-bounces@debbugs.gnu.org Sat Jul 03 11:30:46 2021 Received: (at submit) by debbugs.gnu.org; 3 Jul 2021 15:30:46 +0000 Received: from localhost ([127.0.0.1]:39681 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lzhbR-00026x-VG for submit@debbugs.gnu.org; Sat, 03 Jul 2021 11:30:46 -0400 Received: from lists.gnu.org ([209.51.188.17]:49582) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lzhbQ-00026m-Lm for submit@debbugs.gnu.org; Sat, 03 Jul 2021 11:30:45 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:48212) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lzhbQ-0003r6-AS for bug-guix@gnu.org; Sat, 03 Jul 2021 11:30:44 -0400 Received: from mout.gmx.net ([212.227.17.20]:44245) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lzhbN-0004JI-Qx for bug-guix@gnu.org; Sat, 03 Jul 2021 11:30:43 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=gmx.net; s=badeba3b8450; t=1625326238; bh=I0buhpNrgkJ78CIHRATmfuDRSirouG4PYwidP+rfODs=; h=X-UI-Sender-Class:Date:From:To:Subject; b=ILgzIZLmlFZkCQQ68SHASa/zEKTWrkBOtNGBF1p0bLBAM4R5UmXHEfqWwhewa1O/J GRxYXlDY97V/W5AN3pAkY8CrrT4MtZfXkTi3TfeCrCruwjNyxUV8W8KvMtLy0snAY1 uxrAN3+eVjKXsWHHo5NfUC4t3001gR8Wj6fJpTSU= X-UI-Sender-Class: 01bb95c1-4bf8-414a-932a-4f6e2808ef9c Received: from pepehands ([128.232.109.76]) by mail.gmx.net (mrgmx104 [212.227.17.174]) with ESMTPSA (Nemesis) id 1MPGVx-1lqB5n0caD-00PdRN for ; Sat, 03 Jul 2021 17:30:38 +0200 Date: Sat, 3 Jul 2021 16:30:36 +0100 From: Domagoj Stolfa To: bug-guix@gnu.org Subject: [guix-jupyter] timeout issue running the kernel Message-ID: MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="4lzAAPOIwi+pw8hv" Content-Disposition: inline X-Provags-ID: V03:K1:1Tlv9uzSYkKv8Pwb0riojXf6pWdIL3M6p4WfYwQMklZHvPSR1zB 8YX2QHrGgCVNVp2ZRcaNijQpcTBwCFlWdQNri1muFO1nRxM0Qt+uOcA+QtoPPLBg9piZ47A y9LXyiiWDM7uxQwxo8wocafY4HwG7DNR/ShiVkMQGOaeWnZ4UgpF7EIs2tkT0brXNKvkBh6 vkVZk195Fpif+7xeeQRBg== X-Spam-Flag: NO X-UI-Out-Filterresults: notjunk:1;V03:K0:pxV1Z9YAyDI=:0BOQEUr5t6jow8almzUhuB LGgg/cimijsJXSHDy5wB+GyFubxegcEgjjttBmzLViz3gV2Rmoeyz0Bb4rc6sJplB/JKWbZGg bimxKVlA62nIiwYXPgXRGbbvtvi02cDlH8Q4y/eGTdQNLylDnYWDPq6WnVXf3nTthc/GWBEZ0 C201mNBXSE7fU1eWrNL3cJLZJhrzRlDNt9IRhkTq201UHq1OxmWg836ArzvkWkEyjpvj/B9jM eYj8LWrSvHyzyHm5Brx03nHUEgK3oBQPX0ESOk5ANriJX5vskHw3gKCi28rEodBHZaBuAgjip HKx8N+i6UhWcQymIYLXSt7/7SrMFsAsmW7+AaATkrod5IWLgrbc6bsVzqDE1FjJrxl78D6CK2 LRCC8FZNS2vT+Nhg2OeLDzbo7VgDZyCm9SuT2PDu/wD3I9WyOZZ6v5nTNiResfmwHLqBGcsax fnR3CWNn0nwawVSLTinqFGMZszld5ElFpshyVvRjNRAID5TTnjiDOfPhp7rDf67D48WG6o/u8 Ua6lP39YZyM4z2Yslwf8r9HIdwLXhEDiir9au5GLub+CnXpXs0SFvgrdoa1fnhr1hB5y04JxG TyYKfDJsWcuMikxLrtRCe6uucdWgjRAOZZKjaLoNAJK2fCcBOTgebkt6FGbYT4nJCUPzj6fTC o2o+rAvKBucL0eGWi3VPyqJ0xZLw8auJ5yO33RUv9XSm274oW7xKsShYTN6lGLScAvDyDUCsl DaWkyXCaSUefK/EyPjp+t6neAcCvUdqvLWogZ5Q0gegRuK9jV+R4cTx/NXQLKzsukOekmUSlO vojm/TgRM2Rtz+ISqkmADul5+l9la9eqchGpMDkkU9EaZr7sg09486a7X4d74xH9lLWb5atyq s8xseqyIhP/0xhfNTGDdIG0r1PYkWs9OabcFIhtbDB7m1oG5TqcLeNASiPljyPQ5+r3x/4ffH HCIpXH1l6QLYO2I17gLbJFoHcIsONd5Kc9hAtDZHLaYq+fgG/b7qkwc2ATlV5yGUmspgJClOG jbxxefn4NYa0fm+KgCxcLQXqlW7wny7gSkSa3d0+yiZ+wDg28p/uKf+kmEKr28tgbh0A+aglk GrWfHLnM8wDFd3iawbDRH5iByDUDepr6FTg Received-SPF: pass client-ip=212.227.17.20; envelope-from=ds815@gmx.com; helo=mout.gmx.net X-Spam_score_int: -15 X-Spam_score: -1.6 X-Spam_bar: - X-Spam_report: (-1.6 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, FREEMAIL_ENVFROM_END_DIGIT=0.25, FREEMAIL_FROM=0.001, RCVD_IN_MSPIKE_H2=-0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=no autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.8 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.1 (--) --4lzAAPOIwi+pw8hv Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Hello: I've been trying to set up a Jupyter environment with the Guix kernel inside a guix environment using: `guix environment --ad-hoc guix-jupyter jupyter -- jupyter notebook`. Jupyter starts up fine, but when I create an empty notebook with the Guix kernel it spams Nudge messages in the console, followed by a crash: ``` [W 16:25:40.117 NotebookApp] Nudge: attempt 120 on kernel 14569df8-e4d1-4847-ae1f-c68e13feeed8 [E 16:25:40.479 NotebookApp] Uncaught exception GET /api/kernels/14569df8-e4d1-4847-ae1f-c68e13feeed8/channels?session_id=05319f9c28b3455cad1b9f4fcf9e0e41 (127.0.0.1) HTTPServerRequest(protocol='http', host='localhost:8888', method='GET', uri='/api/kernels/14569df8-e4d1-4847-ae1f-c68e13feeed8/channels?session_id=05319f9c28b3455cad1b9f4fcf9e0e41', version='HTTP/1.1', remote_ip='127.0.0.1') Traceback (most recent call last): File "/gnu/store/zkjmzfd8li7p7yaihm9rs617vqq9n5qh-python-tornado-6.1/lib/python3.8/site-packages/tornado/websocket.py", line 956, in _accept_connection await open_result tornado.util.TimeoutError: Timeout ``` Attempting to run anything in the notebook such as `;;guix environment matplotlib-env <- python-ipykernel python-numpy python-matplotlib` simply does nothing. I'm not sure if this is an issue with me misconfiguring something or if it's actually a bug, but I haven't been able to chase it down as I don't really understand the internals of Jupyter all that well. Adding `python-ipykernel` and using a Python kernel works fine. -- Domagoj --4lzAAPOIwi+pw8hv Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEE7JyU1wrLyiw5G92zcc2InUujXj0FAmDggpwACgkQcc2InUuj Xj021A/+LHBoHATEJsfucdrEcdjSwa86OXyNoWPyaO82aqY9Qrs96X0rAXaTxHih 6WUW5MPJ1BhFxF4bvSFmt38cXVIUWAjcTKtVH9QS7nBGatBwMZ1+es3X5bJNKO0O wfMJx/yuzKaEMOUhfE5q2dP/inPry1vaNBXZLeYtJ6sEI+ZWldvDXp9tvOpyXznc 0acLrAfRb0ZB86aH6nICn6Bfz6ED6alR3yDIUKgjM0Dfup7z+RBGnRbPHep4m/Ri 7tOMlil30UDHQ4/sp0NpvpJr0PvZO895bFJ6XRhNfYRJoR3rQW87N8xG9RvzV5yb 8AMio7NJfD5kchEoMXWoYZqq5yc4JMCEHNTIi7e6ZOieUsAOahGF5bPApgmhAHpp VawwE8iiVhUlA7XBvaMBPx+/FNtY7+pO0DtcM0rJM/0mwIrLFX8nL0cUi31v417l esXLKihajvG0EqmWd/3sqOuIkVg2UUy0Dqf/RKdz4KR3hcSszqhubmDht7+BYSJx LY72QfPLJCvrLr/iJNsvqnZXNw08/aEG4TR/hxQEG8mUtIyKtjCQX40pHVwtJII9 +1OTfAJnYzVlMpEHZEpTMOmEvYpDadUzU4CR0l5yBcBvWbkFmz9bpWjLRJHTr3wl /N/MuFLkHA3HsYKTJqGL5WPqwJyJvxj0Xoen4JjCuzZMI7tGX4s= =Nn+L -----END PGP SIGNATURE----- --4lzAAPOIwi+pw8hv-- From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 05 16:54:27 2021 Received: (at 49355) by debbugs.gnu.org; 5 Jul 2021 20:54:28 +0000 Received: from localhost ([127.0.0.1]:46753 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m0Vbn-0008O1-OC for submit@debbugs.gnu.org; Mon, 05 Jul 2021 16:54:27 -0400 Received: from mout.gmx.net ([212.227.15.18]:38561) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m0Vbm-0008Nn-0C for 49355@debbugs.gnu.org; Mon, 05 Jul 2021 16:54:26 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=gmx.net; s=badeba3b8450; t=1625518459; bh=H1oNepD9yPNC3yR8UfUbyb2XcuS2X9baSKpu9cJvOX8=; h=X-UI-Sender-Class:Date:From:To:Subject; b=QRVy3nXpjPlPvkvP7V8Nj3jErkT5INlFMiihmTd83b2qJoRvjUJFRStKi46HYBDEx KFcThudifGS9kI/VfHarMkCnbePLYj9B/8vlFhq/eTgBobuOBw81aiZYIF1MoFof0f qZUmWeqX7DRZSL7FItd1mm8ZSFuo3mj/sLndvxn0= X-UI-Sender-Class: 01bb95c1-4bf8-414a-932a-4f6e2808ef9c Received: from pepehands ([131.111.128.28]) by mail.gmx.net (mrgmx005 [212.227.17.184]) with ESMTPSA (Nemesis) id 1MOREi-1lpzKX2Dwk-00PyOf for <49355@debbugs.gnu.org>; Mon, 05 Jul 2021 22:54:19 +0200 Date: Mon, 5 Jul 2021 21:54:17 +0100 From: Domagoj Stolfa To: 49355@debbugs.gnu.org Subject: [guix-jupyter] timeout issue running the kernel Message-ID: MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="ME85xzFki1+5CAkV" Content-Disposition: inline X-Provags-ID: V03:K1:T7mCi96kNTUZ8JhwRm07XstN7x3g5V54joG9Xyhk0nefDTnJRE8 PVjBcBfRJZVArqaCB9ilo5buDAfQkaJ24Urt6muzkhLDr+YRC8ISY27ZUXRY01nEtn3F9HB J25n0IZzcVFTLvzx3AuISdp2ROBlvnFN5oIUeAC9k4SSLuFUJW0ntLHWBMeo210paiWevpD tt2QSEUUuI5EXgwsPoguQ== X-Spam-Flag: NO X-UI-Out-Filterresults: notjunk:1;V03:K0:KpX2S0t3nic=:htYhK+3clWL3rp1cqPQ2kI AZYuyaI5I2E30ncgG/LxegGB5BGnzRTZiOfDiQpIrMd6O3CuCw7SfO2H5HXoBi9OZsoCdfl05 TnJpFlglZe9WGOSmpaRDsVTr5tPJpdAjfByfGm+KQmYn9UDiRf3gSXpAAy5JimR83Xo7DS7DU AIdCNt0H5iOkF39W9zo73hwlFYbo70fe4XbubFjgQUFXLQmX1cZ4kvqMJVvFqYglOAbAkAcD9 Nkp0/AkZ2VFeRsHxZmP2KtYODycDQRhSZclsSeQiDYzpmssXWa/GPC6hviur62pwIxUNp6ZYf hsG6Sd5uIoWZnEnC1VRrN0Sl6mY+RPrWSvXiBi+tQIAs3dp3soy7dlSQs4Xwp+aUx8B+YuuBc 0as67hHmufuyp+JzVfbe/Rg6tCA54S0gaTCyQ1ueaA4xwT9x8MxSSawrrPqIzHS9h/4QyjaVt TbFpvoeO2kRphSdcvIwrNl6dVZobdfka9EwR26084Tp6sh8gpYjwwXWAiz8LLab68Lz7dI4vY t0bjDLvk7vQjjxQ/xoIfh3r52n+Z94mWAnWQ8JZV6PCw7BB3P07P0i+OxmmE8czqEcyZe8zA3 gUfOX5bxEB9w9rFjLBRNRKmdTSpxAKqY8EpTXctQawRQO37E08A867fnhALt4tpbsRZ/RGHep RN8OoiH+U9A2O453Nl7S6P1IdwXkbtIQ0J+lvx1YqFRlVtywIvurlhoi7VDU9jA57odeYlz8Q +EYWjrmlKgPaIj3/ktKgbJCBiom747uvtDl2DkPOW3yWoYSEZxGYTjhPJbEXKCvoMYz1S1Nbl QxRtoHb6KzAERGpCESo6QSedT5VqTF1b7pz+OmbmkqbkH1aLDPdrEOZfcr1pPUb5Iiqf0i7L0 WMwGLV1XNyJj+5JFFTiQRXBaMHkPn6Z09X1Atp5nDbj1zteIwmlrJDGoBChVdHoAoSINBaQCM y/2dQwz+Posh5droYbwLkwLzd5aRWO3dseY4mt0d+bYE4ucU6vqnLsCtobeI4sTG6s6YLnktM RB6zePnPkOr+ViuzblhYsHmc5oO0yrZ8nAXds9TfZ/ZDjWav1DCFl8NJDWPKyCB2RsWm1nOia wWmkppjaXO431XvGaYuUkZfNrED8i1DWA/g X-Spam-Score: -0.4 (/) X-Debbugs-Envelope-To: 49355 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.4 (-) --ME85xzFki1+5CAkV Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Having done some time-machining, I can confirm that 68c9e0a56e008f19427bd213cf5b24bdd8fe5922 is a good commit. The guix kernel works fine on it. I don't however yet know which commit caused the regression, but if nobody finds it until I have more time to bisect, I'll report back. -- Domagoj --ME85xzFki1+5CAkV Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEE7JyU1wrLyiw5G92zcc2InUujXj0FAmDjcXkACgkQcc2InUuj Xj264g//VSN4SgPNur7zYgqW1TjMVmv4TYT+ZrldQyiApu4xVoh9ZKpulKhEGYsJ 5RJCzkhhbbxq0JLcl9tKvripTcSa9bG+Bf6oYLB512B2MoE9SdBFcGPHbJmz2X7d aLPCZR5oUbcxZZPfK/m6EiXSzlog0IzaL1lmjsWeFwAhyuWYF9dWxvcNFwNUMknz IxX5TFX/bflYzazjlZSnqi4MnMPOaZccP3uKM/S25BDs0gufPzAnAf+SGJvEbb64 N2C4twXIT0gEMlbY2HnM/R+0QG8652hdV/zKwAM/e9iwsRGr+SYkRhXANaEI1EgE iReWOh8kh6fkGol9eHMy3j7BOUtl+GD3Ysz+XrWhhYKRRHLZT2Whagg+nsG7wzhF s5iTcULLkjn6nqSf02aVn0Js5AuIMTGY/1zoRAMKj0htUVQSEcD8sYzfu9+gUG32 BnlNCTHM7Si76n2FSs7znkzHqehSx338hiEWhLKNyIvkNpPOjfo3wSvSBSDa4JBu Df16c28lKqHu6crlOTniAv80OvdUK5YsKnl/G6YeAHTd/IT5SzbvxsPTC0Ri8STq hkYarv8uCUK1kkqb1Xe3IdJd9DzePqiEzLl7J6tozFEX86UvrNg+oMoge4twWUGY tVjGTRaDznTIHLtkfzs2t00fFS7+i/3l9YV9syC/rgbdfD5IW54= =ngs0 -----END PGP SIGNATURE----- --ME85xzFki1+5CAkV-- From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 05 21:32:05 2021 Received: (at 49355) by debbugs.gnu.org; 6 Jul 2021 01:32:05 +0000 Received: from localhost ([127.0.0.1]:46908 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m0ZwS-0006vs-Pg for submit@debbugs.gnu.org; Mon, 05 Jul 2021 21:32:04 -0400 Received: from mout.gmx.net ([212.227.15.15]:37781) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m0ZwR-0006v6-KR for 49355@debbugs.gnu.org; Mon, 05 Jul 2021 21:32:04 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=gmx.net; s=badeba3b8450; t=1625535117; bh=erDkJbtcH2vTURfH91/5EZgM2WCufz89WGgv/88Ivto=; h=X-UI-Sender-Class:Date:From:To:Subject; b=GS+UfbFOxkrPDDAb6tKWd0cEebk5ndwEZADZYAb33c0WbqDXmKHK7gz1MfF+itEjU YYhdFgAT3U8RnXmV0mH/BEzECM1DVSfLTpXyQRT9F4PcjwM+qBE0vOCtWExZk7LAYH eu6lnwZpK2TLHmUsdD3DHWl50bVH1DGxhwtXLKDQ= X-UI-Sender-Class: 01bb95c1-4bf8-414a-932a-4f6e2808ef9c Received: from pepehands ([128.232.109.40]) by mail.gmx.net (mrgmx004 [212.227.17.184]) with ESMTPSA (Nemesis) id 1Mqs4Z-1lMWAm0TDN-00munO for <49355@debbugs.gnu.org>; Tue, 06 Jul 2021 03:31:57 +0200 Date: Tue, 6 Jul 2021 02:31:55 +0100 From: Domagoj Stolfa To: 49355@debbugs.gnu.org Subject: [guix-jupyter] timeout issue running the kernel Message-ID: MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="KTDn/V9sNU2zWSNY" Content-Disposition: inline X-Provags-ID: V03:K1:OMXU9roTi81uNpUjmNgTJO2Uaa9d18j8Ev80DLvJLuAH3bWtPJJ FBQQA6Z4j/Pc3SnIYdmZPJfWZuDxavynJ8KBqcC8EqwC82ls/GUxQyXNvPi2cyUbWhaUiq3 AdGK0/DVDS/lkVAVrgAsjF2G/hVEWQlXvOatWNcGtID+JB/Nxfvb1yFkoRQWmgdMJNYSwwz 5Vz9RqaKfqy3MYiffyDdA== X-Spam-Flag: NO X-UI-Out-Filterresults: notjunk:1;V03:K0:QUffTB+u+iU=:qAOoPlv0niicmu8hhAva3o THsndnc4cpaztePA3aSCadeiefpqGJ8uv/L0T60E86nw8DhiW6FzFSXoMPM+//5BTqKkxNduP 0GsDm2byw/wkHxEW/FUFHVZU0mqTrGyyWligwr9NQbPH6SrpvlAF28Njd+zbn0c2yklQA763H uHi8miydDU5MPRKT3dcFXEglGIi6zl18s4/xy5g895z4mHa+wM8Ovtq9T+ef0d1ujkiJpGqJJ XalQXeCReZG4taW4DCOkAub5lSkLTGQYCTXuvwqBzd5TcXuBxH9fEF6QkYh9es3TMQpCmkfvv 4XCjjaEXotTMwhRbLrdt6by+lr/9BZDq2q264zUEIjELKIdIFWJZVu7GBIyLzxDxo6haf/BW1 sDEo3r9OXExAUYqrW6+Qty4c/hALwurRwEi+kakez5N4SOjIB8vhVdqo3l7neJGc3DxRB4Mx6 3FpME9klApfyE66SdiyoOosZhko6RuRZbrA3yh1991ENmX6plMijFCVAuooUwXPSG15HISdDF y6sh442Wvni29vmfWUtdLSrojlwyVigNr+eY9w/XKl2yyid3CXUqCXvHOUAIr9o4EjbQvBYjd VySMFL+kzAU9+rabI8Z2E2YDGJkBToUFrTOyJKKIAyl/923vhm3z82pDMJYijZtvSSglKaOhq ub9NnXhHptrz7DwllpjS/fmqHHFW74ZJnmPKD7PvEVPR24AxSqURxayzFPvQXr3lbdvWeBDON a9VQrZd+cZD27cPNFqc8fDNdow3fKBnLcs4P4k7coWe3btX4m2BY1SvRJq5oMVzKUfQLOPXn4 VwvxkgoIOTsxpoKlF9VaYRUWx0L8MTAtRJfuiYluqsyQSAB7Nrx+Ew9Y+NQHStide9ulNsPEb 12qydGSjGXZ/coKtvI/jKXGK2r63AAOGHyjEnXs6Worgl2FmkHbO1J17R059AHeUN+OcYxhjX 9e5TtFanQ8E7xYvVw+UG7lraVH2QD3DcyExI58RHsOwDprYKBdJwUGQs2byH2MOUBmtA2ECHV kKjyCPFpFJ15hmbPpsA8iDgKnHeXI8tiIMTXkFWzhGto32GG4Xa7d9p1D4C46en0geLAkHFQu Kj3L9j2VxobCWyF9R3tnlViiML88tYrd5GY X-Spam-Score: 0.4 (/) X-Debbugs-Envelope-To: 49355 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.6 (/) --KTDn/V9sNU2zWSNY Content-Type: text/plain; charset=us-ascii Content-Disposition: inline After a very painful bisect with various issues appearing in jupyter (unrelated to this one), I've identified the first good commit and the first bad commit. The commit range which caused the problem is between 95f25c9b13e22603c35f3acd9048fbd1c8671925 and 9e7f09cbec40257619e57edfdd700c775e96833d which is a series of commits by Ricardo updating a bunch of python stuff, including jupyter. My suspicion is that the update to jupyter-core from 4.4.0 to 4.7.1 (2a12cbaaab970bcab09002e952e062da0274f0b6) caused jupyter-core to no longer agree with the guix kernel. I haven't diagnosed further. The first good commit is 85788dd64d5c54ff52f19c8bb6c8c522ed581b2c and the first bad commit I was able to actually get jupyter to work on is 9e7f09cbec40257619e57edfdd700c775e96833d. -- Domagoj --KTDn/V9sNU2zWSNY Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEE7JyU1wrLyiw5G92zcc2InUujXj0FAmDjsosACgkQcc2InUuj Xj0GAw/+J72tQL+ErXk6kc+8svyZ2slynFQijySL8XQ5mnxGcyPYIpBS8dBLNml7 21XBdU2J18WZE2Z+/ErmtH7V3NtiUM8TAHIXJcuda7E9pXyucOxnxaQnQKFQw2e8 zBk830p2RYDQwe10HAkDpZNaA3AOk25/dHgvI/+7aMw0UFJ2Ut4ZiIuZQN2MV+yj puBAOyGVkArxPrkQqbojnFFgZ1PIyhfCGrD1lZwqWWqzwv0itRWVjzlXJiuPF7Ut DWTtmeWYl0rqEkWun6h7C43FuhaMHZgGNqlADiZiVW7vBWpt8RiZdCF3G25w5ZoK AvXiDRY71FNE0aogurer0N8XuGRJORtEkgPAS9WfuLEXLyRkNbK8qACfbxk56BPt +5Kpngtf0q5gMFpT4qGEv4rEK8Ft1wDlFgF9hwRPYpckbwPXXEvSIqLVpJHucc7y OfFXoznmJQR+vevNtCphBX1F54sSd00zqSACkLODwioBFhWahFpqclLMVLNEb00c 2N7uNKKGAeECciQIAIbpalpQ/9UVCNmVtQ6PNOEgdPl3KfoOdn5SvwLS/LWyK5ap 0NvY2W+2xjK475JmrXzvoMc8n1wX7p5jLAcMnq8YeIux1izeAW2lKyrHx9VRSWoa EFfwocKgW2lkXiL3c2YtPuYuZpuFE9yT4SBwUNfWUWssBykYo/A= =OHqa -----END PGP SIGNATURE----- --KTDn/V9sNU2zWSNY-- From debbugs-submit-bounces@debbugs.gnu.org Tue Jul 06 11:49:05 2021 Received: (at 49355) by debbugs.gnu.org; 6 Jul 2021 15:49:05 +0000 Received: from localhost ([127.0.0.1]:49816 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m0nJp-0000C9-2d for submit@debbugs.gnu.org; Tue, 06 Jul 2021 11:49:05 -0400 Received: from eggs.gnu.org ([209.51.188.92]:47892) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m0nJn-0000BA-JW for 49355@debbugs.gnu.org; Tue, 06 Jul 2021 11:49:03 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:47630) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1m0nJi-0002RH-A3; Tue, 06 Jul 2021 11:48:58 -0400 Received: from [2001:660:6102:320:e120:2c8f:8909:cdfe] (port=36632 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1m0nJi-0000ls-2W; Tue, 06 Jul 2021 11:48:58 -0400 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: Domagoj Stolfa Subject: Re: bug#49355: [guix-jupyter] timeout issue running the kernel References: Date: Tue, 06 Jul 2021 17:48:55 +0200 In-Reply-To: (Domagoj Stolfa's message of "Tue, 6 Jul 2021 02:31:55 +0100") Message-ID: <87zguzphnc.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 49355 Cc: 49355@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hi, Domagoj Stolfa skribis: > After a very painful bisect with various issues appearing in jupyter (unr= elated > to this one), I've identified the first good commit and the first bad com= mit. > > The commit range which caused the problem is between > > 95f25c9b13e22603c35f3acd9048fbd1c8671925 > > and > > 9e7f09cbec40257619e57edfdd700c775e96833d > > which is a series of commits by Ricardo updating a bunch of python stuff, > including jupyter. My suspicion is that the update to jupyter-core from 4= .4.0 to > 4.7.1 (2a12cbaaab970bcab09002e952e062da0274f0b6) caused jupyter-core to no > longer agree with the guix kernel. I haven't diagnosed further. > > The first good commit is 85788dd64d5c54ff52f19c8bb6c8c522ed581b2c and the= first > bad commit I was able to actually get jupyter to work on is > 9e7f09cbec40257619e57edfdd700c775e96833d. Thanks for bisecting! I believe this is fixed by . You should be able to try it out by running: guix environment --ad-hoc jupyter guix-jupyter \ --with-branch=3Dguix-jupyter=3Dmaster -- \ jupyter notebook --debug --no-browser Hmm now that I re-test it seems to be unreliable. Perhaps I=E2=80=99m miss= ing something else. Let me know if it works for you! Ludo=E2=80=99. From debbugs-submit-bounces@debbugs.gnu.org Tue Jul 06 12:12:29 2021 Received: (at 49355) by debbugs.gnu.org; 6 Jul 2021 16:12:29 +0000 Received: from localhost ([127.0.0.1]:49856 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m0ngT-00031h-2W for submit@debbugs.gnu.org; Tue, 06 Jul 2021 12:12:29 -0400 Received: from mout.gmx.net ([212.227.17.21]:50283) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m0ngQ-00031R-QV for 49355@debbugs.gnu.org; Tue, 06 Jul 2021 12:12:27 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=gmx.net; s=badeba3b8450; t=1625587940; bh=bHqm2/cznrCd2N1Q7JiQrjX0D5QRJkw4ce5gcZ0bfd8=; h=X-UI-Sender-Class:Date:From:To:Cc:Subject:References:In-Reply-To; b=gcK9dyf+nricwSbcCae6mU+H4H5IpMWtHi6nq7aebUbhR7Mjho4pTuREYz1Q57pYg d7k+PG5hURKlwKy2S1gsmNpbicdfC8q9jkezTIwvUdMqcajR4AnF6lGn71wLt8UAA8 WKF8hiSiRnx//NGNyzFiS/iQFUTVDnz7pvpty/LY= X-UI-Sender-Class: 01bb95c1-4bf8-414a-932a-4f6e2808ef9c Received: from pepehands ([128.232.109.40]) by mail.gmx.net (mrgmx105 [212.227.17.174]) with ESMTPSA (Nemesis) id 1MNbkp-1lqivH1upf-00P6eR; Tue, 06 Jul 2021 18:12:20 +0200 Date: Tue, 6 Jul 2021 17:12:18 +0100 From: Domagoj Stolfa To: Ludovic =?iso-8859-1?Q?Court=E8s?= Subject: Re: bug#49355: [guix-jupyter] timeout issue running the kernel Message-ID: References: <87zguzphnc.fsf@gnu.org> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="3hAFthfMTyicnLU3" Content-Disposition: inline In-Reply-To: <87zguzphnc.fsf@gnu.org> X-Provags-ID: V03:K1:v7P9GK2DG8ZmOAsQCbsQPXXPqeLU/Ijx3+0amSfVfJqdyCtPctH o0FuHj2nySLwlhXjXQBsdK0jlBJSpht5GIO4AWxZ5MBrbIxkpGGR0GxuefywPFJ9DfBYmfo O4EgVpini+sgNU9JI67RK+n6rZzE4JzrfNGjjLyksGyZMvg2WOV7cE20TARzEapuERLSQAr kvxB5NjVWVFfP4Hr3qf3g== X-Spam-Flag: NO X-UI-Out-Filterresults: notjunk:1;V03:K0:tRax6emGtcg=:o6AH0M7hlUr/dt8F+Lw5oU z90MM/9lwReJ3tOOA5qDU4kF6vdssxij0FHkFxikmcF/4FMlqn+Sub9C9UK8E9OD0PfnBXat3 yau84Oq43X2/zzdjzYJgEKqboO8S0vZiYAYCjpMG8uWKV/JVjJH/OY3vSllprMEAkwXE9xOl8 w2mUawHIwEa58qWB/kd8VKXFBUwfEcqUu2iBWSGsAizYKEehMag6oDjG7eJLsbqmO+w/aIcQs Vvi3LR3iIqS9Uz1ei4Jo4TEFsYJ7ZeDjLsmWSHQquUOeuSRXmr/2OKXoxMy4nsNeeSfR+vNrb mYQZmZ+/5m6tboM3gVkFD+YEixxz88pDqedFSYhuXXbj35J7fTi/W1s8lFr/+a2+cfS+KIGq3 JGFpoAZcFhkTGY1K3QinmknV3WNUOfqKHm6vjIPe3U8OLyGYHrQf/d35XAGerSbHtPD5X01rV 3aYut9tUrgOthWJHq2JEpGww5qdQv6ZjYygC4dJPVkB5wRFlUq2fFUBuvbsq3YtdCSeWjBYZN boC+RKi2yXeO0ZDgr1Al88L1wW3SCH1gwTF6PmUGYLB5TpexU49HT+EWbs0lraYu6hZWQUjpB DiG2HU03UwStqNT/AseqsBRsS7/uqlzr2EaiGar69t3oTfpVorkeQCkR4MKeYjrgKQZXE3/wh Q4AMs7N66DGUvBHaEr849lHeP3BM31C5ZgWiN1JGSXLQkCL7TSkCun9fHwRJFQDpPZEWamEcU CxcFPZwgf3569AHuFxoCCpHTR5iAnX9ELNOv+4sDiMexqai0/65wthmzMGBlMsdcDSbfbp0Bx BYbquRq+dIS4J5lwkfAG6W1+2BIB+BwzSR+LmQiIo9X3xdyFHZtFjxODXUU3PcH3VjSX9tz1F 1o1ePgxwIHs0dSUHIVSDlZ1wW8ElHOEF4cVa1TZ2UyJtl9h+WoJDcP71KQ1LNv3dMtgjG+hk8 LMoDYLjVua7TjXIzKawL6cUBx1+BQbji3fx4NPs6Gcyd+lj+Kw1PF42N7L0CIAuB6b5yHqv82 PYCKvrK8B8bnzZ8cWtyOIfMPDmIhgNKFTwg2GEsWKQleHIxdtXCtwh3lUGkEKppfGXxjqPQcY BnGyEk8tLf3GUwwAXzzRtaQRMr/XlCQApWw X-Spam-Score: 0.2 (/) X-Debbugs-Envelope-To: 49355 Cc: 49355@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.8 (/) --3hAFthfMTyicnLU3 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Hi: > Let me know if it works for you! Thanks for the quick fix! So far it has worked well -- I haven't yet run into any unreliable behaviour, but my notebooks are extremely simple at the moment, at most simply plotting some stuff with matplotlib! -- Domagoj --3hAFthfMTyicnLU3 Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEE7JyU1wrLyiw5G92zcc2InUujXj0FAmDkgOIACgkQcc2InUuj Xj33zxAAiV6CZnUVPI0KgJv4FZgyZg1J2ZUTxe/MLdLS6P9m9zBVs+hY7xX9kj35 ADpxWu6m50XvdEfrznknaLHKKfuvaxmdkbqDcQOTOaQmHS+LDWtibuZ+KUvtg28h uZfWp4Vkfim92xV9WEHZ/uB0GsXq/81oXGu5S2zQF5T6o1TjD3qX6vIM3fBWOYG2 ubdVMT95f3ZI6PDC2PapoQud7vSDyULGTNBw9wdpaGrEqNV/t7SOVQYP1y0xrH6J dLJQ4Qa3aKPzbc/1BvO3vV781PtY4rKNumeecUQeC4Rg0faKyjGFMdvTYk4QndWB 7+ZhKuzl+CiNXCTKmtnVmndV1yIXnXkyJ/3WhVVrcx2DLNVa4t/x4T6rWMR78C5c ED0c8XNudxUkpzTENpjWvmGV57YkXyIypc52BviSbKpKExSTC7qZVsoqMcIwXQrp O/EavqUdwSz1qdR0yGyJsOz4mBWHT67wxMq3VM26NorKp0g1JLUSKoNsrZ+EHz8n f93DQTOjaTuNKiO3tgVv1utMP21KsSFlMO2/HU9dPETVgzr1qhnIsbid7xPsenl5 aJ01RuZSQOJ1ty5xkNs7fQ6k8aciLAw4FCSyxwiKrx9EQpmleSpbWx5ZRr8hvn/C 6WfNTkODwB9KQuaQY56JTIW0eRyK9amCn4dADkTnn5RobNReSzA= =1GF5 -----END PGP SIGNATURE----- --3hAFthfMTyicnLU3-- From debbugs-submit-bounces@debbugs.gnu.org Thu Jul 08 12:42:29 2021 Received: (at control) by debbugs.gnu.org; 8 Jul 2021 16:42:29 +0000 Received: from localhost ([127.0.0.1]:57345 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m1X6b-0004nB-Am for submit@debbugs.gnu.org; Thu, 08 Jul 2021 12:42:29 -0400 Received: from mout.gmx.net ([212.227.17.22]:46103) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m1X6V-0004mr-7D for control@debbugs.gnu.org; Thu, 08 Jul 2021 12:42:27 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=gmx.net; s=badeba3b8450; t=1625762536; bh=7k4o59GnjMV/EpW9qfsZ1WiijepvG2v72ZT7wCczpi0=; h=X-UI-Sender-Class:Date:From:To:Subject; b=JKXj/9fjHtyi7vxGczXqANLB6Jr9ajWYFawurRpeGYETciUbLGVae06kTP75Q9Sxo GJsh71CFf1DapWFI8JVnYUv5B4Yc7P/5ZgScQe/WC+FITcaupmQUEi8YNGRKlG4URY 9I+fa3VURvofkrOkLG/gmKv7EsdvRtvctvgNTMJA= X-UI-Sender-Class: 01bb95c1-4bf8-414a-932a-4f6e2808ef9c Received: from pepehands ([128.232.109.40]) by mail.gmx.net (mrgmx105 [212.227.17.174]) with ESMTPSA (Nemesis) id 1MG9kC-1lyDB632Hk-00GXfU for ; Thu, 08 Jul 2021 18:42:16 +0200 Date: Thu, 8 Jul 2021 17:42:15 +0100 From: Domagoj Stolfa To: control@debbugs.gnu.org Subject: [guix-jupyter] timeout issue running the kernel Message-ID: MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="uTCWQK6x7i0tHXHF" Content-Disposition: inline X-Provags-ID: V03:K1:L+kVaw6ugMKFbK21bSkq/vIHTEmSNHyFIVeLTt1G24FyqP8baYB pbbe+JS8wacMWHqWPyS5YYlZq+ctJAsAOXk9+0VyijDm4ZUoh/XwkGGj6SB+SV7tNBg3aJS DSUAINYdfZ8LkBwbw5gkAUc6bnoUcnOjSZzfLGfMbFlvnSD3yufUiTHINe8T7qW7vV3/LEg 3OXSX5XIy+PeLlgrbwq0A== X-Spam-Flag: NO X-UI-Out-Filterresults: notjunk:1;V03:K0:1GqrpV1G/Ak=:JBjNjwv3ZIhkOV9GWvPAP8 l4xURbj+fBdlYAHUiEFwuj33YFMkmRlBRtvScxhvzufIif6hxSzZwQq70OhpsOs/Pm58M2JtC AS+zSh+Hw6urwJ5RaR4SC60BrlfBiratRLcmle/do7/AsO5NTQC0/QUS71lIp2oxrDVWeASu5 Vvt2/I/8o+fY/3cElUOfg1XfmJDvSQ6/UgwkqA3ZsDII7iWJVsVHqFpZLctToBHoFTkjg2EQr ImUh5uWWrILF9Mjcz559vHAUbB7na7fzTWQra6ePLO2ZhmHzjoWcF+WwdfFY55gnVS0rOzAp/ xz3JxaU6RMFYGVQ3VCDTbLTzdRNrCbgnd/Yr46pKDrVtJ1NYqYuwpRNIUoSvnens7Hle378cx BqMEDiLXScSoMA0OhY/sKr1JvSFcmYocIgolMEH6mip53lt1LI9yCLPrhdGKYZqujqnPvOuZ1 bd97LHdbpWLQ9KpSawxmQECWxmSFwTntTR1Z0CDet/P17amMbkKBeskvKYAfMznfeJX5YxdqS jKJGEExHxRQ740gd9klqvqUwKexwRmboV9D3eV3boB4IFmTAdQ2vCc7E+EJoz7jHEsf+5WNaM EDZkYf4fQYtlJ9GlcKfGYtSJ/+EqAtKmjjwYQPd680GIwDxrYKTobsgTnKjx6GUUcopcC/Mgf 2wxiCS3AjA/Qmsnz3k9ccveHxxscESsXSCh5PWvOpOjeOkn42p+XxN8PWoS2sDAHfGmCfPjXJ dwwyzOzgYqDIFH4KXnNdYsIvwvjGrAr1MMwXFkr0L93X48kzCcyuTVfwNG4TbM4t8DaZVpEr4 Ps+n2pe5ZypyBlglb3ZRJ1idx99WgxBH43OHAaxGiF6KqptL0UnV16j/2nBMrB3ZhskBTn1eQ 0u7sKYYrPJB/prVi8VkLk152oovLzFSHy8euNQVtKx0OOnuPsCz/aZ17JPckSdjuCzTXG3uKE y3giJbzcZIPF9CFn1rnt2DjodkJO/aYUqqNVInqyWzE1fgaXfnr3zqtkoHHVdkgOuy92xezjk eKJH2Gh9kDjhiAzal8AJpSjXzoghTrKyhncmlxMoCImWSq8rtPlKnHWYExl0gd6J1cl1c0o8R uVTxO2LvEV0zUesyPK7NaFKbjKe9GXZlm+2 X-Spam-Score: 0.2 (/) X-Debbugs-Envelope-To: control X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.8 (/) --uTCWQK6x7i0tHXHF Content-Type: text/plain; charset=us-ascii Content-Disposition: inline close 49355 --uTCWQK6x7i0tHXHF Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEE7JyU1wrLyiw5G92zcc2InUujXj0FAmDnKucACgkQcc2InUuj Xj27FRAAoYhYMaPQbQKDNwrEhEYznS0+2j9YWqBxzaQ0/AMrX9FCQ4+2uY48eDln wyJEry0iLtKNe+HbHGJVY4EgX2+2HAu+iYUEiVQqyL1bhaatpM+AJKyMT14IDLg5 MrKkZeEYtqq9Ok1y3hQXxYVJkBKRzs35siOOgroh7pCR/zihTnRPt6vZ+BQLYFYK 44LhP6s+i2UCUsHs5v53XdvgnXVfKxrkTYmJblCEyXpF0xb597+OLPkJfuHXgxVO xq4nbzoewZ12S+ocJLrVfNzrRAQt0eJ1xI5f/t5Njm6XCJf4uBOdo//0/zAaiQzz tkMfnvGPfHhwvnnY3nf32NO9vOvDwkeA48WzxhW/M1eF229xIUdnnbkAuZMtYOsE NvuZ0/R6Qba9H8AZ+HPRFS2eRIMaItSOgP2YlTDp34NsSZQvFWDWfMxnbXUEjy3x xLUpfrDyeyT0/HRpvhYXqD7jmMnWS6+a/p8mKLrHaWyYH6FLPY0sZtvttVgIHY/A Z3a4VKrP7fT82UbhcatirI1wYelny8cXV+ilLgQUuIlmvRfACfXgzUjxGCEM9DKi 3rNXRzE9AN3H0V8dV4A4ylrORoVnQAYugftu04v50epLpjXu+iTmFAqObgM2q2wC 8dZSzTe5ab3VPCBBeOREi4MHsEW3DmguVbJArr964oPi2j24h0s= =214C -----END PGP SIGNATURE----- --uTCWQK6x7i0tHXHF-- From unknown Sat Jun 21 03:31:08 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 06 Aug 2021 11:24:08 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator