GNU bug report logs - #49314
Stan package broken

Previous Next

Full log

Message #13 received at 49314-done <at> debbugs.gnu.org (full text, mbox):

From: Maxim Cournoyer <maxim.cournoyer <at> gmail.com>
To: Kyle Andrews <kyle.c.andrews <at> gmail.com>
Cc: 49314-done <at> debbugs.gnu.org
Subject: Re: bug#49314: Stan package broken
Date: Tue, 12 Jul 2022 09:14:29 -0400

Hi,

Kyle Andrews <kyle.c.andrews <at> gmail.com> writes:

> Hello,
>
> I tried to run a "Hello World" stan model using the r-rstan package.
>
> #+BEGIN_SRC R
> stancode="data {
>   int<lower=0> N;
>   vector[N] x;
>   vector[N] y;
> }
> parameters {
>   real alpha;
>   real beta;
>   real<lower=0> sigma;
> }
> model {
>   y ~ normal(alpha + beta * x, sigma);
> }
> "
> stan_lm = stan(model_code = stancode)
> #+END_SRC
>
>
> Running that code I get the error:
>
> #+BEGIN_EXAMPLE
> Error in dyn.load(libLFile) : 
>   unable to load shared object '/tmp/Rtmp1AXXXr/file1ffd36a95fa3.so':
>   /gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /tmp/Rtmp1AXXXr/file1ffd36a95fa3.so)
> Error in sink(type = "output") : invalid connection
> #+END_EXAMPLE
>
> I setup my environment with:
>
> : guix environment --ad-hoc r-rstan r-rstanarm r

I've tried exercising some of the things shown at
https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started in 'guix
shell r-rstan r-rstanarm r-minimal' and it seems to work.  I'm on Guix
commit 17892c5.

Closing.

Thanks for the report!

Maxim

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.