GNU bug report logs - #48774
[PATCH] Fix build of python-scanpy

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Roel Janssen <roel <at> gnu.org>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#48774: closed ([PATCH] Fix build of python-scanpy)
Date: Fri, 04 Jun 2021 21:59:02 +0000

[Message part 1 (text/plain, inline)]

Your message dated Fri, 04 Jun 2021 23:58:09 +0200
with message-id <b4dde66852e631dcc1d10f45b0a66880be1262d0.camel <at> gnu.org>
and subject line Re: bug#48774: [PATCH] Fix build of python-scanpy
has caused the debbugs.gnu.org bug report #48774,
regarding [PATCH] Fix build of python-scanpy
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
48774: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=48774
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Roel Janssen <roel <at> gnu.org>
To: guix-patches <at> gnu.org
Subject: [PATCH] Fix build of python-scanpy
Date: Tue, 1 Jun 2021 10:33:34 +0200

[Message part 3 (text/plain, inline)]

Dear Guix,

The attached two patches update python-anndata and python-scanpy, which 
effectively fix the build for python-scanpy.

python-anndata switched to a PEP518 setup instead of the regular Python 
"setup.py" approach.  So with some help on IRC, I added custom phases 
inspired by the python-tinycss2 package.

Kind regards,
Roel Janssen

[0001-gnu-python-anndata-Update-to-0.7.6.patch (text/x-patch, attachment)]

[0002-gnu-python-scanpy-Update-to-1.7.2.patch (text/x-patch, attachment)]

[Message part 6 (message/rfc822, inline)]

From: Roel Janssen <roel <at> gnu.org>
To: Mathieu Othacehe <othacehe <at> gnu.org>
Cc: 48774-done <at> debbugs.gnu.org
Subject: Re: bug#48774: [PATCH] Fix build of python-scanpy
Date: Fri, 04 Jun 2021 23:58:09 +0200

Hi Mathieu,

On Fri, 2021-06-04 at 13:54 +0200, Mathieu Othacehe wrote:
> 
> Hello Roel,
> 
> > The attached two patches update python-anndata and python-scanpy,
> > which
> > effectively fix the build for python-scanpy.
> 
> Both patches look fine to me.
> 

Thanks for looking at them!  I rebuilt python-scanpy with these patches
on the latest master, and pushed these patches.

Kind regards,
Roel Janssen

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.