GNU bug report logs - #48575
[PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor).

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Message #83 received at 48575 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 48575 <at> debbugs.gnu.org.
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 26/50] gnu: r-genomicfiles: Move to (gnu packages
 bioconductor).
Date: Fri, 21 May 2021 22:25:58 +0200

* gnu/packages/bioinformatics.scm (r-genomicfiles): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfiles): ...to here.
---
 gnu/packages/bioconductor.scm   | 34 +++++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 34 ---------------------------------
 2 files changed, 34 insertions(+), 34 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 92eb5a0906..e73e78f616 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2546,6 +2546,40 @@ transcripts, exons, cds and genes.  Flexible methods are provided for
 extracting the desired features in a convenient format.")
     (license license:artistic2.0)))
 
+(define-public r-genomicfiles
+  (package
+    (name "r-genomicfiles")
+    (version "1.26.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "GenomicFiles" version))
+       (sha256
+        (base32
+         "0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz"))))
+    (properties `((upstream-name . "GenomicFiles")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocgenerics" ,r-biocgenerics)
+       ("r-biocparallel" ,r-biocparallel)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-genomicalignments" ,r-genomicalignments)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-iranges" ,r-iranges)
+       ("r-matrixgenerics" ,r-matrixgenerics)
+       ("r-rsamtools" ,r-rsamtools)
+       ("r-rtracklayer" ,r-rtracklayer)
+       ("r-s4vectors" ,r-s4vectors)
+       ("r-summarizedexperiment" ,r-summarizedexperiment)
+       ("r-variantannotation" ,r-variantannotation)))
+    (home-page "https://bioconductor.org/packages/GenomicFiles")
+    (synopsis "Distributed computing by file or by range")
+    (description
+     "This package provides infrastructure for parallel computations
+distributed by file or by range.  User defined mapper and reducer functions
+provide added flexibility for data combination and manipulation.")
+    (license license:artistic2.0)))
+
 (define-public r-genomicranges
   (package
     (name "r-genomicranges")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index acaf41acc4..4836eee82c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8994,40 +8994,6 @@ their variance is independent of the mean, and they are usually more sensitive
 and specific in detecting differential transcription.")
     (license license:artistic2.0)))
 
-(define-public r-genomicfiles
-  (package
-    (name "r-genomicfiles")
-    (version "1.26.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (bioconductor-uri "GenomicFiles" version))
-       (sha256
-        (base32
-         "0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz"))))
-    (properties `((upstream-name . "GenomicFiles")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-biocgenerics" ,r-biocgenerics)
-       ("r-biocparallel" ,r-biocparallel)
-       ("r-genomeinfodb" ,r-genomeinfodb)
-       ("r-genomicalignments" ,r-genomicalignments)
-       ("r-genomicranges" ,r-genomicranges)
-       ("r-iranges" ,r-iranges)
-       ("r-matrixgenerics" ,r-matrixgenerics)
-       ("r-rsamtools" ,r-rsamtools)
-       ("r-rtracklayer" ,r-rtracklayer)
-       ("r-s4vectors" ,r-s4vectors)
-       ("r-summarizedexperiment" ,r-summarizedexperiment)
-       ("r-variantannotation" ,r-variantannotation)))
-    (home-page "https://bioconductor.org/packages/GenomicFiles")
-    (synopsis "Distributed computing by file or by range")
-    (description
-     "This package provides infrastructure for parallel computations
-distributed by file or by range.  User defined mapper and reducer functions
-provide added flexibility for data combination and manipulation.")
-    (license license:artistic2.0)))
-
 (define-public r-dirichletmultinomial
   (package
     (name "r-dirichletmultinomial")
-- 
2.30.1

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