GNU bug report logs - #48575
[PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor).

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From: zimoun <zimon.toutoune <at> gmail.com>
To: 48575 <at> debbugs.gnu.org.
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [bug#48575] [PATCH 29/50] gnu: r-affyio: Move to (gnu packages bioconductor).
Date: Fri, 21 May 2021 22:26:01 +0200

* gnu/packages/bioinformatics.scm (r-affyio): Move from here...
* gnu/packages/bioconductor.scm (r-affyio): ...to here.
---
 gnu/packages/bioconductor.scm   | 24 ++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 24 ------------------------
 2 files changed, 24 insertions(+), 24 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c63d39dc9c..d0ebcf8481 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1694,6 +1694,30 @@ problems in CEL-level data to help evaluate performance of quality metrics.")
 to streamline the more common analyses that a Biostatistician might see.")
     (license license:artistic2.0)))
 
+(define-public r-affyio
+  (package
+    (name "r-affyio")
+    (version "1.60.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "affyio" version))
+       (sha256
+        (base32
+         "14xnzrxrvgxgixjhq5a9fdgcmrxam2j74hwidkc9if92ffv6s83h"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-zlibbioc" ,r-zlibbioc)))
+    (inputs
+     `(("zlib" ,zlib)))
+    (home-page "https://github.com/bmbolstad/affyio")
+    (synopsis "Tools for parsing Affymetrix data files")
+    (description
+     "This package provides routines for parsing Affymetrix data files based
+upon file format information.  The primary focus is on accessing the CEL and
+CDF file formats.")
+    (license license:lgpl2.0+)))
+
 (define-public r-affxparser
   (package
     (name "r-affxparser")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1c90700c95..7256df3f83 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8934,30 +8934,6 @@ proteowizard library for mzML and mzIdentML.  The netCDF reading code has
 previously been used in XCMS.")
     (license license:artistic2.0)))
 
-(define-public r-affyio
-  (package
-    (name "r-affyio")
-    (version "1.60.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (bioconductor-uri "affyio" version))
-       (sha256
-        (base32
-         "14xnzrxrvgxgixjhq5a9fdgcmrxam2j74hwidkc9if92ffv6s83h"))))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-zlibbioc" ,r-zlibbioc)))
-    (inputs
-     `(("zlib" ,zlib)))
-    (home-page "https://github.com/bmbolstad/affyio")
-    (synopsis "Tools for parsing Affymetrix data files")
-    (description
-     "This package provides routines for parsing Affymetrix data files based
-upon file format information.  The primary focus is on accessing the CEL and
-CDF file formats.")
-    (license license:lgpl2.0+)))
-
 (define-public r-vsn
   (package
     (name "r-vsn")
-- 
2.30.1

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