GNU bug report logs - #48575
[PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor).

Previous Next

Full log

View this message in rfc822 format

From: zimoun <zimon.toutoune <at> gmail.com>
To: 48575 <at> debbugs.gnu.org.
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [bug#48575] [PATCH 37/50] gnu: r-seqlogo: Move to (gnu packages bioconductor).
Date: Fri, 21 May 2021 22:26:09 +0200

* gnu/packages/bioinformatics.scm (r-seqlogo): Move from here...
* gnu/packages/bioconductor.scm (r-seqlogo): ...to here.
---
 gnu/packages/bioconductor.scm   | 23 +++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 23 -----------------------
 2 files changed, 23 insertions(+), 23 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 47a245b4f5..c58c5af5d6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3447,6 +3447,29 @@ differential expression analysis, RNAseq data and related problems.")
     ;; Any version of the LGPL
     (license license:lgpl3+)))
 
+(define-public r-seqlogo
+  (package
+    (name "r-seqlogo")
+    (version "1.56.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "seqLogo" version))
+       (sha256
+        (base32
+         "02rpzjjfg5chlwwfbvv72cm78cg2vfmdwzars0cin9hz1hd7rnq1"))))
+    (properties `((upstream-name . "seqLogo")))
+    (build-system r-build-system)
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/seqLogo")
+    (synopsis "Sequence logos for DNA sequence alignments")
+    (description
+     "seqLogo takes the position weight matrix of a DNA sequence motif and
+plots the corresponding sequence logo as introduced by Schneider and
+Stephens (1990).")
+    (license license:lgpl2.0+)))
+
 (define-public r-seqpattern
   (package
     (name "r-seqpattern")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e2000ccb68..9ba818d581 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7849,29 +7849,6 @@ including VCF header and contents in RDF and JSON.")
     (home-page "https://github.com/vcflib/bio-vcf")
     (license license:expat)))
 
-(define-public r-seqlogo
-  (package
-    (name "r-seqlogo")
-    (version "1.56.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (bioconductor-uri "seqLogo" version))
-       (sha256
-        (base32
-         "02rpzjjfg5chlwwfbvv72cm78cg2vfmdwzars0cin9hz1hd7rnq1"))))
-    (properties `((upstream-name . "seqLogo")))
-    (build-system r-build-system)
-    (native-inputs
-     `(("r-knitr" ,r-knitr)))
-    (home-page "https://bioconductor.org/packages/seqLogo")
-    (synopsis "Sequence logos for DNA sequence alignments")
-    (description
-     "seqLogo takes the position weight matrix of a DNA sequence motif and
-plots the corresponding sequence logo as introduced by Schneider and
-Stephens (1990).")
-    (license license:lgpl2.0+)))
-
 (define-public r-zlibbioc
   (package
     (name "r-zlibbioc")
-- 
2.30.1

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.