GNU bug report logs - #47930
[PATCH] gnu: Add pbgzip.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Roel Janssen <roel <at> gnu.org>
Subject: bug#47930: closed (Re: [bug#47930] [PATCH] gnu: Add pbgzip.)
Date: Fri, 30 Apr 2021 16:49:02 +0000

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Your bug report

#47930: [PATCH] gnu: Add pbgzip.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 47930 <at> debbugs.gnu.org.

-- 
47930: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=47930
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Roel Janssen <roel <at> gnu.org>
To: Efraim Flashner <efraim <at> flashner.co.il>
Cc: Xinglu Chen <public <at> yoctocell.xyz>, 47930-done <at> debbugs.gnu.org
Subject: Re: [bug#47930] [PATCH] gnu: Add pbgzip.
Date: Fri, 30 Apr 2021 18:47:59 +0200

On Fri, 2021-04-30 at 14:53 +0300, Efraim Flashner wrote:
> 
> 
> > From 1af29f66980ba19740e05a27135f141e23b7fd3f Mon Sep 17 00:00:00
> > 2001
> > From: Roel Janssen <roel <at> gnu.org>
> > Date: Fri, 30 Apr 2021 13:47:43 +0200
> > Subject: [PATCH] gnu: Add pbgzip.
> > 
> > ...
> > +      (synopsis "Parallel Block GZIP")
> > +      (description "This package implements parallel block gzip. 
> > For many
> > +formats, in particular genomics data formats, data are compressed
> > in
> 
> I wasn't sure about 'data are' vs 'data is' but I think data here is
> plural, so 'data are' should be right.
> 
> > +fixed-length blocks such that they can be easily indexed based on
> > a (genomic)
> > +coordinate order, since typically each block is sorted according
> > to this order.
> > +This allows for each block to be individually compressed
> > (deflated), or more
> > +importantly, decompressed (inflated), with the latter enabling
> > random retrieval
> > +of data in large files (gigabytes to terabytes).  @code{pbgzip} is
> > not limited
> > +to any particular format, but certain features are tailored to
> > genomics data
> > +formats when enabled.  Parallel decompression is somewhat faster,
> > but the true
> > +speedup comes during compression.")
> > +      (license license:expat))))
> > +
> >  (define-public blasr-libcpp
> >    (package
> >      (name "blasr-libcpp")
> > -- 
> > 2.31.1
> > 
> 
> Looks good to me!
> 

Thank you Efraim, and thank you Xinglu Chen.
I pushed this patch.

Kind regards,
Roel Janssen

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From: Roel Janssen <roel <at> gnu.org>
To: guix-patches <at> gnu.org
Subject: [PATCH] gnu: Add pbgzip.
Date: Wed, 21 Apr 2021 14:26:47 +0200

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Hi Guix,

Here's a patch to add pbgzip.  Lint complains that there is no release 
on the Github page, but there's nothing I can do about it.

Kind regards,
Roel Janssen

[0001-gnu-Add-pbgzip.patch (text/x-patch, attachment)]

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