From unknown Sun Jun 15 08:54:11 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#47821] [PATCH] Update htslib, bcftools, samtools, bedtools Resent-From: Roel Janssen Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 16 Apr 2021 09:56:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 47821 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47821@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.161856695032673 (code B ref -1); Fri, 16 Apr 2021 09:56:02 +0000 Received: (at submit) by debbugs.gnu.org; 16 Apr 2021 09:55:50 +0000 Received: from localhost ([127.0.0.1]:40066 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lXLCX-0008Uv-H9 for submit@debbugs.gnu.org; Fri, 16 Apr 2021 05:55:50 -0400 Received: from lists.gnu.org ([209.51.188.17]:48572) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lXLCT-0008Uh-9G for submit@debbugs.gnu.org; Fri, 16 Apr 2021 05:55:48 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:49192) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lXLCS-0006wW-W8 for guix-patches@gnu.org; Fri, 16 Apr 2021 05:55:45 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:57238) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lXLCS-0003L1-PN for guix-patches@gnu.org; Fri, 16 Apr 2021 05:55:44 -0400 Received: from 2001-1c02-0b18-2900-222e-248e-9586-e52d.cable.dynamic.v6.ziggo.nl ([2001:1c02:b18:2900:222e:248e:9586:e52d]:48092) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1lXLCP-0002sD-Tk for guix-patches@gnu.org; Fri, 16 Apr 2021 05:55:44 -0400 Message-ID: <9345d6a11fd99f1a8eefeb3664508938255e1287.camel@gnu.org> From: Roel Janssen Date: Fri, 16 Apr 2021 11:55:39 +0200 Content-Type: multipart/mixed; boundary="=-oNWaDSLvzxxygzL4N0vk" User-Agent: Evolution 3.38.4 (3.38.4-1.fc33) MIME-Version: 1.0 X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) --=-oNWaDSLvzxxygzL4N0vk Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 7bit Hi Guix, The following patches update htslib, bcftools, samtools, and bedtools. I've succesfully built bedtools with the latest samtools instead of the 1.9 version. Kind regards, Roel Janssen --=-oNWaDSLvzxxygzL4N0vk Content-Disposition: attachment; filename="0004-gnu-Update-bedtools-to-2.30.0.patch" Content-Type: text/x-patch; name="0004-gnu-Update-bedtools-to-2.30.0.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSA0NTQ5ZjYyMjA0MmNiOGMwNDE2NWQ4NWZmOTIyZDEyOWY3YzEwNTUzIE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBSb2VsIEphbnNzZW4gPHJvZWxAZ251Lm9yZz4KRGF0ZTogRnJp LCAxNiBBcHIgMjAyMSAxMTo1MjoxNiArMDIwMApTdWJqZWN0OiBbUEFUQ0ggNC80XSBnbnU6IFVw ZGF0ZSBiZWR0b29scyB0byAyLjMwLjAuCgoqIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5z Y20gKGJlZHRvb2xzKTogVXBkYXRlIHRvIDIuMzAuMCwKICBbaW5wdXRzXTogVXNlIGxhdGVzdCBz YW10b29scy4KLS0tCiBnbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2NtIHwgNiArKystLS0K IDEgZmlsZSBjaGFuZ2VkLCAzIGluc2VydGlvbnMoKyksIDMgZGVsZXRpb25zKC0pCgpkaWZmIC0t Z2l0IGEvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbSBiL2dudS9wYWNrYWdlcy9iaW9p bmZvcm1hdGljcy5zY20KaW5kZXggMmEyMDk3MTA4OS4uOTRiZjkxN2RmNSAxMDA2NDQKLS0tIGEv Z251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbQorKysgYi9nbnUvcGFja2FnZXMvYmlvaW5m b3JtYXRpY3Muc2NtCkBAIC00NTMsNyArNDUzLDcgQEAgY29tcHV0YXRpb25hbCBjbHVzdGVyLiIp CiAoZGVmaW5lLXB1YmxpYyBiZWR0b29scwogICAocGFja2FnZQogICAgIChuYW1lICJiZWR0b29s cyIpCi0gICAgKHZlcnNpb24gIjIuMjkuMiIpCisgICAgKHZlcnNpb24gIjIuMzAuMCIpCiAgICAg KHNvdXJjZSAob3JpZ2luCiAgICAgICAgICAgICAgIChtZXRob2QgdXJsLWZldGNoKQogICAgICAg ICAgICAgICAodXJpIChzdHJpbmctYXBwZW5kICJodHRwczovL2dpdGh1Yi5jb20vYXJxNXgvYmVk dG9vbHMyL3JlbGVhc2VzLyIKQEAgLTQ2MSw3ICs0NjEsNyBAQCBjb21wdXRhdGlvbmFsIGNsdXN0 ZXIuIikKICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAiYmVkdG9vbHMtIiB2ZXJz aW9uICIudGFyLmd6IikpCiAgICAgICAgICAgICAgIChzaGEyNTYKICAgICAgICAgICAgICAgIChi YXNlMzIKLSAgICAgICAgICAgICAgICAiMG0zaGs2NTQ4ODQ2dzgzYTlzNWRyc2N6dnk2N24yYXp4 NDFrajcxbjAza2xiMmdiendnMyIpKSkpCisgICAgICAgICAgICAgICAgIjFmMmhoNzlsN2RuMTQ3 YzJ4eWZnZjV3Zmp2bHFmdzMya2pmbm5oMm4xcXk2cnB6eDJmaWsiKSkpKQogICAgIChidWlsZC1z eXN0ZW0gZ251LWJ1aWxkLXN5c3RlbSkKICAgICAoYXJndW1lbnRzCiAgICAgICcoIzp0ZXN0LXRh cmdldCAidGVzdCIKQEAgLTQ3Myw3ICs0NzMsNyBAQCBjb21wdXRhdGlvbmFsIGNsdXN0ZXIuIikK ICAgICAobmF0aXZlLWlucHV0cwogICAgICBgKCgicHl0aG9uIiAscHl0aG9uLXdyYXBwZXIpKSkK ICAgICAoaW5wdXRzCi0gICAgIGAoKCJzYW10b29scyIgLHNhbXRvb2xzLTEuOSkKKyAgICAgYCgo InNhbXRvb2xzIiAsc2FtdG9vbHMpCiAgICAgICAgKCJ6bGliIiAsemxpYikpKQogICAgIChob21l LXBhZ2UgImh0dHBzOi8vZ2l0aHViLmNvbS9hcnE1eC9iZWR0b29sczIiKQogICAgIChzeW5vcHNp cyAiVG9vbHMgZm9yIGdlbm9tZSBhbmFseXNpcyBhbmQgYXJpdGhtZXRpYyIpCi0tIAoyLjMwLjIK Cg== --=-oNWaDSLvzxxygzL4N0vk Content-Disposition: attachment; filename="0003-gnu-Update-samtools-to-1.12.patch" Content-Type: text/x-patch; name="0003-gnu-Update-samtools-to-1.12.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSA2YTE4YmQwNWNkZDE4MWIxOWFiOTlmOTJmMWVmODdmMTU1NGM2MjJkIE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBSb2VsIEphbnNzZW4gPHJvZWxAZ251Lm9yZz4KRGF0ZTogRnJp LCAxNiBBcHIgMjAyMSAxMTo1MTo0MSArMDIwMApTdWJqZWN0OiBbUEFUQ0ggMy80XSBnbnU6IFVw ZGF0ZSBzYW10b29scyB0byAxLjEyLgoKKiBnbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2Nt IChzYW10b29scyk6IFVwZGF0ZSB0byAxLjEyLgotLS0KIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1h dGljcy5zY20gfCA2ICsrKy0tLQogMSBmaWxlIGNoYW5nZWQsIDMgaW5zZXJ0aW9ucygrKSwgMyBk ZWxldGlvbnMoLSkKCmRpZmYgLS1naXQgYS9nbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2Nt IGIvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbQppbmRleCBhN2NmZmRmODNjLi4yYTIw OTcxMDg5IDEwMDY0NAotLS0gYS9nbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2NtCisrKyBi L2dudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20KQEAgLTU5MDEsNyArNTkwMSw3IEBAIHRv IHRoZSB1c2VyJ3MgcXVlcnkgb2YgaW50ZXJlc3QuIikKIChkZWZpbmUtcHVibGljIHNhbXRvb2xz CiAgIChwYWNrYWdlCiAgICAgKG5hbWUgInNhbXRvb2xzIikKLSAgICAodmVyc2lvbiAiMS4xMSIp CisgICAgKHZlcnNpb24gIjEuMTIiKQogICAgIChzb3VyY2UKICAgICAgKG9yaWdpbgogICAgICAg IChtZXRob2QgdXJsLWZldGNoKQpAQCAtNTkxMCwxMSArNTkxMCwxMSBAQCB0byB0aGUgdXNlcidz IHF1ZXJ5IG9mIGludGVyZXN0LiIpCiAgICAgICAgICAgICAgICAgICAgICAgIHZlcnNpb24gIi9z YW10b29scy0iIHZlcnNpb24gIi50YXIuYnoyIikpCiAgICAgICAgKHNoYTI1NgogICAgICAgICAo YmFzZTMyCi0gICAgICAgICAiMWRwNXdrbmFrNGFybnc1Z2hoaWY5bW1samxmbnc1YmdtOTF3aWI3 ejBqOHdkanl3eDB6MiIpKQorICAgICAgICAgIjFqcmRqMmlkcG1hNWphOWNnMHJyNzNiNTY1dmRi cjl3eXk2emlnNTRiaWRpY2MycGc4dmQiKSkKICAgICAgICAobW9kdWxlcyAnKChndWl4IGJ1aWxk IHV0aWxzKSkpCiAgICAgICAgKHNuaXBwZXQgJyhiZWdpbgogICAgICAgICAgICAgICAgICAgIDs7 IERlbGV0ZSBidW5kbGVkIGh0c2xpYi4KLSAgICAgICAgICAgICAgICAgICAoZGVsZXRlLWZpbGUt cmVjdXJzaXZlbHkgImh0c2xpYi0xLjExIikKKyAgICAgICAgICAgICAgICAgICAoZGVsZXRlLWZp bGUtcmVjdXJzaXZlbHkgImh0c2xpYi0xLjEyIikKICAgICAgICAgICAgICAgICAgICAjdCkpKSkK ICAgICAoYnVpbGQtc3lzdGVtIGdudS1idWlsZC1zeXN0ZW0pCiAgICAgKGFyZ3VtZW50cwotLSAK Mi4zMC4yCgo= --=-oNWaDSLvzxxygzL4N0vk Content-Disposition: attachment; filename="0002-gnu-Update-bcftools-to-1.12.patch" Content-Type: text/x-patch; name="0002-gnu-Update-bcftools-to-1.12.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSBmMTUxM2Q3YjQzZmExNGUxNWQ5NDVjOTJmYjlmYTJjNjQ1MWE0NmI5IE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBSb2VsIEphbnNzZW4gPHJvZWxAZ251Lm9yZz4KRGF0ZTogRnJp LCAxNiBBcHIgMjAyMSAxMTo1MDo1MyArMDIwMApTdWJqZWN0OiBbUEFUQ0ggMi80XSBnbnU6IFVw ZGF0ZSBiY2Z0b29scyB0byAxLjEyLgoKKiBnbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2Nt IChiY2Z0b29scyk6IFVwZGF0ZSB0byAxLjEyLgotLS0KIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1h dGljcy5zY20gfCA2ICsrKy0tLQogMSBmaWxlIGNoYW5nZWQsIDMgaW5zZXJ0aW9ucygrKSwgMyBk ZWxldGlvbnMoLSkKCmRpZmYgLS1naXQgYS9nbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2Nt IGIvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbQppbmRleCBlMzg1ZTA3Y2VhLi5hN2Nm ZmRmODNjIDEwMDY0NAotLS0gYS9nbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2NtCisrKyBi L2dudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20KQEAgLTMyNyw3ICszMjcsNyBAQCBCQU0g ZmlsZXMuIikKIChkZWZpbmUtcHVibGljIGJjZnRvb2xzCiAgIChwYWNrYWdlCiAgICAgKG5hbWUg ImJjZnRvb2xzIikKLSAgICAodmVyc2lvbiAiMS4xMSIpCisgICAgKHZlcnNpb24gIjEuMTIiKQog ICAgIChzb3VyY2UgKG9yaWdpbgogICAgICAgICAgICAgICAobWV0aG9kIHVybC1mZXRjaCkKICAg ICAgICAgICAgICAgKHVyaSAoc3RyaW5nLWFwcGVuZCAiaHR0cHM6Ly9naXRodWIuY29tL3NhbXRv b2xzL2JjZnRvb2xzLyIKQEAgLTMzNSwxMSArMzM1LDExIEBAIEJBTSBmaWxlcy4iKQogICAgICAg ICAgICAgICAgICAgICAgICAgICAgICAgICAgIHZlcnNpb24gIi9iY2Z0b29scy0iIHZlcnNpb24g Ii50YXIuYnoyIikpCiAgICAgICAgICAgICAgIChzaGEyNTYKICAgICAgICAgICAgICAgIChiYXNl MzIKLSAgICAgICAgICAgICAgICAiMHI1MDhtcDE1cHF6ZjhyMTI2OWtiNHY1bmF3OXpzdmJ3ZDNj ejhzMXlqN2NhcnNmOXZpdyIpKQorICAgICAgICAgICAgICAgICIxeDk0bDFoeTJwaTNsYnowc3hs YncwZzZxNXo1YXBjcmhybGN3ZGE5NG5zOW40cjZhM2tzIikpCiAgICAgICAgICAgICAgIChtb2R1 bGVzICcoKGd1aXggYnVpbGQgdXRpbHMpKSkKICAgICAgICAgICAgICAgKHNuaXBwZXQgJyhiZWdp bgogICAgICAgICAgICAgICAgICAgICAgICAgICA7OyBEZWxldGUgYnVuZGxlZCBodHNsaWIuCi0g ICAgICAgICAgICAgICAgICAgICAgICAgIChkZWxldGUtZmlsZS1yZWN1cnNpdmVseSAiaHRzbGli LTEuMTEiKQorICAgICAgICAgICAgICAgICAgICAgICAgICAoZGVsZXRlLWZpbGUtcmVjdXJzaXZl bHkgImh0c2xpYi0xLjEyIikKICAgICAgICAgICAgICAgICAgICAgICAgICAgI3QpKSkpCiAgICAg KGJ1aWxkLXN5c3RlbSBnbnUtYnVpbGQtc3lzdGVtKQogICAgIChhcmd1bWVudHMKLS0gCjIuMzAu MgoK --=-oNWaDSLvzxxygzL4N0vk Content-Disposition: attachment; filename="0001-gnu-htslib-Update-to-1.12.patch" Content-Type: text/x-patch; name="0001-gnu-htslib-Update-to-1.12.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSA0NWU1Nzg5NzZjZDBjNzdlNjBkMjE4ODM4NWFkY2RhNTFiMjNiOTJhIE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBSb2VsIEphbnNzZW4gPHJvZWxAZ251Lm9yZz4KRGF0ZTogRnJp LCAxNiBBcHIgMjAyMSAxMTo0OTo0OSArMDIwMApTdWJqZWN0OiBbUEFUQ0ggMS80XSBnbnU6IGh0 c2xpYjogVXBkYXRlIHRvIDEuMTIuCgoqIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20g KGh0c2xpYik6IFVwZGF0ZSB0byAxLjEyLgotLS0KIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGlj cy5zY20gfCA0ICsrLS0KIDEgZmlsZSBjaGFuZ2VkLCAyIGluc2VydGlvbnMoKyksIDIgZGVsZXRp b25zKC0pCgpkaWZmIC0tZ2l0IGEvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbSBiL2du dS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20KaW5kZXggNDFlZjRjZDUxMy4uZTM4NWUwN2Nl YSAxMDA2NDQKLS0tIGEvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbQorKysgYi9nbnUv cGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2NtCkBAIC00NDc2LDcgKzQ0NzYsNyBAQCBwZXJmb3Jt YW5jZS4iKQogKGRlZmluZS1wdWJsaWMgaHRzbGliCiAgIChwYWNrYWdlCiAgICAgKG5hbWUgImh0 c2xpYiIpCi0gICAgKHZlcnNpb24gIjEuMTEiKQorICAgICh2ZXJzaW9uICIxLjEyIikKICAgICAo c291cmNlIChvcmlnaW4KICAgICAgICAgICAgICAgKG1ldGhvZCB1cmwtZmV0Y2gpCiAgICAgICAg ICAgICAgICh1cmkgKHN0cmluZy1hcHBlbmQKQEAgLTQ0ODQsNyArNDQ4NCw3IEBAIHBlcmZvcm1h bmNlLiIpCiAgICAgICAgICAgICAgICAgICAgIHZlcnNpb24gIi9odHNsaWItIiB2ZXJzaW9uICIu dGFyLmJ6MiIpKQogICAgICAgICAgICAgICAoc2hhMjU2CiAgICAgICAgICAgICAgICAoYmFzZTMy Ci0gICAgICAgICAgICAgICAgIjFtcnE0bWloengzN3lxaGozc2Z6NmRhNm13NDluaWlhODA4Ynpz dzJna2tnbWFkeHZ5bmciKSkpKQorICAgICAgICAgICAgICAgICIxanBsbnZpemdyMGZ5eXZ2bWtm bW5zeXdycnBxaGlkMzc2MHZ3MTVibGx6OThxZGk5MDEyIikpKSkKICAgICAoYnVpbGQtc3lzdGVt IGdudS1idWlsZC1zeXN0ZW0pCiAgICAgOzsgTGV0IGh0c2xpYiB0cmFuc2xhdGUgImdzOi8vIiBh bmQgInMzOi8vIiB0byByZWd1bGFyIGh0dHBzIGxpbmtzIHdpdGgKICAgICA7OyAiLS1lbmFibGUt Z2NzIiBhbmQgIi0tZW5hYmxlLXMzIi4gRm9yIHRoZXNlIG9wdGlvbnMgdG8gd29yaywgd2UgYWxz bwotLSAKMi4zMC4yCgo= --=-oNWaDSLvzxxygzL4N0vk-- From unknown Sun Jun 15 08:54:11 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#47821] [PATCH] Update htslib, bcftools, samtools, bedtools Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 27 Apr 2021 07:33:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47821 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Roel Janssen Cc: 47821@debbugs.gnu.org Received: via spool by 47821-submit@debbugs.gnu.org id=B47821.161950877511750 (code B ref 47821); Tue, 27 Apr 2021 07:33:02 +0000 Received: (at 47821) by debbugs.gnu.org; 27 Apr 2021 07:32:55 +0000 Received: from localhost ([127.0.0.1]:47944 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lbIDG-00033S-Ow for submit@debbugs.gnu.org; Tue, 27 Apr 2021 03:32:54 -0400 Received: from flashner.co.il ([178.62.234.194]:38060) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lbIDE-00033D-EX for 47821@debbugs.gnu.org; Tue, 27 Apr 2021 03:32:53 -0400 Received: from localhost (unknown [31.210.177.125]) by flashner.co.il (Postfix) with ESMTPSA id F242D40333; Tue, 27 Apr 2021 07:32:45 +0000 (UTC) Date: Tue, 27 Apr 2021 10:32:13 +0300 From: Efraim Flashner Message-ID: Mail-Followup-To: Efraim Flashner , Roel Janssen , 47821@debbugs.gnu.org References: <9345d6a11fd99f1a8eefeb3664508938255e1287.camel@gnu.org> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha512; protocol="application/pgp-signature"; boundary="VOx5ZNk+LbDimLUN" Content-Disposition: inline In-Reply-To: <9345d6a11fd99f1a8eefeb3664508938255e1287.camel@gnu.org> X-PGP-Key-ID: 0x41AAE7DCCA3D8351 X-PGP-Key: https://flashner.co.il/~efraim/efraim_flashner.asc X-PGP-Fingerprint: A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 X-Spam-Score: -0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --VOx5ZNk+LbDimLUN Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable On Fri, Apr 16, 2021 at 11:55:39AM +0200, Roel Janssen wrote: > Hi Guix, >=20 > The following patches update htslib, bcftools, samtools, and bedtools. > I've succesfully built bedtools with the latest samtools instead of the > 1.9 version. These look good and are ready for merging. Can you take a look at python-pybedtools? There's a new version out which I hope builds with the newer version of bedtools. Thanks. --=20 Efraim Flashner =D7=90=D7=A4=D7=A8=D7=99=D7=9D = =D7=A4=D7=9C=D7=A9=D7=A0=D7=A8 GPG key =3D A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 Confidentiality cannot be guaranteed on emails sent or received unencrypted --VOx5ZNk+LbDimLUN Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAABCgAdFiEEoov0DD5VE3JmLRT3Qarn3Mo9g1EFAmCHvfoACgkQQarn3Mo9 g1EQfg/9H2Nlj+v17X6H7Gm3dMT/W/LmkizRtsbhVEJgYfKBxDpAFAhPNNFHGJbf tHXPos4lZEsWNouh85fpZmNE8HSK/du579V+6YVJ/akovO3pvALHxd0BB96OuTJy Kf48+nizNkX9rpOymD9dGuQaJmGmHGF+UzBQz6jKnh401+qM8X6as6wJQK9VL2kV czQmwvZFnWR3S3rZJ3OF+d7o0kPaMGDod66u2nlTAiv5nhf0znsHFdDGmLWjY+zM clyDmoI2JEM3tgK9WfqZVlsuj+PZuwu1YRk4/4FOXzUqodciS32nivsKsZcgPHiB WlsTjtCtaAdgX2rdRi0eeunHESQoi8j3DQNm6lWNb30d5ADDymjrce8wPVtxLqX6 GwbNcsfU2JXchPxWbPmjiKEixSGPCVAK4XwovtpBHhr+FtH/4T+P96UcYDTVn5+d PPPK5f0FuojBGCOfzfF2E6NkduOoQE9F3g/Gug4uXSaH6mwcPg9TfiA3vvZbtNAZ YbGQ4NEoX/QYBW+kgTvhcChdcX49pUFMgwpDqPZDgUoy4mxpjDQcozOG307/DyBf eIWvDbb15PoB3dl2kr9L/LrIXG5VU7MQBceZahn7ZliP+O7tKdeaIQZkAig2SZbz K+WDTU8NAtXLbZB8tZeDIyse8brB5Lq/a7sHH3StQ+026pXmhTU= =Y4KA -----END PGP SIGNATURE----- --VOx5ZNk+LbDimLUN-- From unknown Sun Jun 15 08:54:11 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#47821] [PATCH] Update htslib, bcftools, samtools, bedtools Resent-From: Roel Janssen Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 28 Apr 2021 14:06:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47821 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Efraim Flashner Cc: 47821@debbugs.gnu.org Received: via spool by 47821-submit@debbugs.gnu.org id=B47821.161961872211280 (code B ref 47821); Wed, 28 Apr 2021 14:06:02 +0000 Received: (at 47821) by debbugs.gnu.org; 28 Apr 2021 14:05:22 +0000 Received: from localhost ([127.0.0.1]:53739 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lbkob-0002vr-Jx for submit@debbugs.gnu.org; Wed, 28 Apr 2021 10:05:22 -0400 Received: from eggs.gnu.org ([209.51.188.92]:57652) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lbkoZ-0002vc-CU for 47821@debbugs.gnu.org; Wed, 28 Apr 2021 10:05:20 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:44253) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lbkoS-0004Pq-Ht; Wed, 28 Apr 2021 10:05:14 -0400 Received: from 2001-1c02-0b18-2900-222e-248e-9586-e52d.cable.dynamic.v6.ziggo.nl ([2001:1c02:b18:2900:222e:248e:9586:e52d]:35472) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1lbkoR-00066q-SN; Wed, 28 Apr 2021 10:05:12 -0400 Message-ID: <63890b0475ea51a1215713195d929ff76b639630.camel@gnu.org> From: Roel Janssen Date: Wed, 28 Apr 2021 16:05:09 +0200 In-Reply-To: References: <9345d6a11fd99f1a8eefeb3664508938255e1287.camel@gnu.org> Content-Type: multipart/mixed; boundary="=-djLtlCJ59+uZ/z0rSwY4" User-Agent: Evolution 3.40.0 (3.40.0-1.fc34) MIME-Version: 1.0 X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) --=-djLtlCJ59+uZ/z0rSwY4 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 7bit On Tue, 2021-04-27 at 10:32 +0300, Efraim Flashner wrote: > On Fri, Apr 16, 2021 at 11:55:39AM +0200, Roel Janssen wrote: > > Hi Guix, > > > > The following patches update htslib, bcftools, samtools, and > > bedtools. > > I've succesfully built bedtools with the latest samtools instead of > > the > > 1.9 version. > > These look good and are ready for merging. Can you take a look at > python-pybedtools? There's a new version out which I hope builds with > the newer version of bedtools. > > Thanks. > I looked at python-pybedtools and came up with the following patch. The test phase is still not entirely happy because it ends with: --- ================ 497 passed, 3 xfailed, 426 warnings in 25.49s ================= Error in atexit._run_exitfuncs: Traceback (most recent call last): File "/gnu/store/rz42ba0my9vrgbkjpkzr2drmnjk5ah50-python- 3.8.2/lib/python3.8/shutil.py", line 704, in rmtree orig_st = os.lstat(path) --- I attached the patch that I have that at least builds the newer version of python-pybedtools. I don't know how to further test it. Can I in the meantime already push the patches for updating htslib, bcftools, samtools and bedtools? Kind regards, Roel Janssen --=-djLtlCJ59+uZ/z0rSwY4 Content-Disposition: attachment; filename="0005-gnu-Update-python-pybedtools-to-0.8.2.patch" Content-Type: text/x-patch; name="0005-gnu-Update-python-pybedtools-to-0.8.2.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSA1MDRiM2Q4YWM2YjcxMDhiNDcwOTFkOTM5NzZlMTlkZjU3NTdiZjUyIE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBSb2VsIEphbnNzZW4gPHJvZWxAZ251Lm9yZz4KRGF0ZTogV2Vk LCAyOCBBcHIgMjAyMSAxNjowMDozOCArMDIwMApTdWJqZWN0OiBbUEFUQ0ggNS81XSBnbnU6IFVw ZGF0ZSBweXRob24tcHliZWR0b29scyB0byAwLjguMi4KCiogZ251L3BhY2thZ2VzL2Jpb2luZm9y bWF0aWNzLnNjbSAocHl0aG9uLXB5YmVkdG9vbHMpOiBVcGRhdGUgdG8gMC44LjI7CiAgW2Rpc2Fi bGUtYnJva2VuLXRlc3RzXTogUmVtb3ZlIHNuaXBwZXRzIGZvciBub24tZXhpc3RpbmcgJ3Rlc3Rf c2NyaXB0cy5weScuCi0tLQogZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbSB8IDIzICsr KystLS0tLS0tLS0tLS0tLS0tLS0tCiAxIGZpbGUgY2hhbmdlZCwgNCBpbnNlcnRpb25zKCspLCAx OSBkZWxldGlvbnMoLSkKCmRpZmYgLS1naXQgYS9nbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Mu c2NtIGIvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbQppbmRleCA5YjQ0OGRjZDIxLi45 ZGNhZTdmOGIxIDEwMDY0NAotLS0gYS9nbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2NtCisr KyBiL2dudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20KQEAgLTgxNSwxMyArODE1LDEzIEBA IGludGVuZGVkIHRvIGJlaGF2ZSBleGFjdGx5IHRoZSBzYW1lIGFzIHRoZSBvcmlnaW5hbCBCV0sg YXdrLiIpCiAoZGVmaW5lLXB1YmxpYyBweXRob24tcHliZWR0b29scwogICAocGFja2FnZQogICAg IChuYW1lICJweXRob24tcHliZWR0b29scyIpCi0gICAgKHZlcnNpb24gIjAuOC4xIikKKyAgICAo dmVyc2lvbiAiMC44LjIiKQogICAgIChzb3VyY2UgKG9yaWdpbgogICAgICAgICAgICAgICAobWV0 aG9kIHVybC1mZXRjaCkKICAgICAgICAgICAgICAgKHVyaSAocHlwaS11cmkgInB5YmVkdG9vbHMi IHZlcnNpb24pKQogICAgICAgICAgICAgICAoc2hhMjU2CiAgICAgICAgICAgICAgICAoYmFzZTMy Ci0gICAgICAgICAgICAgICAgIjE0dzVpNDBnaTI1Y2xycjdoNHdhMnBjcG55aXB5YThocnFpN25x Nzc1NTN6YzV3ZjBkZjAiKSkpKQorICAgICAgICAgICAgICAgICIwd2M3ejhnOHByZ2R4N241Y2hq dmEyZmRxMDN3aXdocWlzamp4emtqZzFqNWs1aGE3MTUxIikpKSkKICAgICAoYnVpbGQtc3lzdGVt IHB5dGhvbi1idWlsZC1zeXN0ZW0pCiAgICAgKGFyZ3VtZW50cwogICAgICBgKCM6bW9kdWxlcyAo KGljZS05IGZ0dykKQEAgLTgzNCwxMyArODM0LDYgQEAgaW50ZW5kZWQgdG8gYmVoYXZlIGV4YWN0 bHkgdGhlIHNhbWUgYXMgdGhlIG9yaWdpbmFsIEJXSyBhd2suIikKICAgICAgICAobW9kaWZ5LXBo YXNlcyAlc3RhbmRhcmQtcGhhc2VzCiAgICAgICAgICAoYWRkLWFmdGVyICd1bnBhY2sgJ2Rpc2Fi bGUtYnJva2VuLXRlc3RzCiAgICAgICAgICAgIChsYW1iZGEgXwotICAgICAgICAgICAgIChzdWJz dGl0dXRlKiAicHliZWR0b29scy90ZXN0L3Rlc3Rfc2NyaXB0cy5weSIKLSAgICAgICAgICAgICAg IDs7IFRoaXMgdGVzdCBmcmVlemVzLgotICAgICAgICAgICAgICAgKCgiZGVmIHRlc3RfaW50cm9u X2V4b25fcmVhZHMiKQotICAgICAgICAgICAgICAgICJkZWYgX2RvX25vdF90ZXN0X2ludHJvbl9l eG9uX3JlYWRzIikKLSAgICAgICAgICAgICAgIDs7IFRoaXMgdGVzdCBmYWlscyBpbiB0aGUgUHl0 aG9uIDIgYnVpbGQuCi0gICAgICAgICAgICAgICAoKCJkZWYgdGVzdF92ZW5uX21wbCIpCi0gICAg ICAgICAgICAgICAgImRlZiBfZG9fbm90X3Rlc3RfdmVubl9tcGwiKSkKICAgICAgICAgICAgICAo c3Vic3RpdHV0ZSogInB5YmVkdG9vbHMvdGVzdC90ZXN0X2hlbHBlcnMucHkiCiAgICAgICAgICAg ICAgICA7OyBSZXF1aXJlcyBpbnRlcm5ldCBhY2Nlc3MuCiAgICAgICAgICAgICAgICAoKCJkZWYg dGVzdF9jaHJvbXNpemVzIikKQEAgLTg4MCwxNyArODczLDkgQEAgaW50ZW5kZWQgdG8gYmVoYXZl IGV4YWN0bHkgdGhlIHNhbWUgYXMgdGhlIG9yaWdpbmFsIEJXSyBhd2suIikKICAgICAgICAgICAg ICAgICAgICAgICAgICAgICBidWlsZC1yb290LWRpcmVjdG9yeQogICAgICAgICAgICAgICAgICAg ICAgICAgICAgIChmaW5kIChjdXQgc3RyaW5nLXByZWZpeD8gImxpYiIgPD4pCiAgICAgICAgICAg ICAgICAgICAgICAgICAgICAgICAgICAgKHNjYW5kaXIgKHN0cmluZy1hcHBlbmQKLSAgICAgICAg ICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgYnVpbGQtcm9vdC1kaXJlY3Rvcnkp KSkpKQotICAgICAgICAgICAgICAgICAgICAoc2NyaXB0cyAoc3RyaW5nLWFwcGVuZAotICAgICAg ICAgICAgICAgICAgICAgICAgICAgICAgYnVpbGQtcm9vdC1kaXJlY3RvcnkKLSAgICAgICAgICAg ICAgICAgICAgICAgICAgICAgIChmaW5kIChjdXQgc3RyaW5nLXByZWZpeD8gInNjcmlwdHMiIDw+ KQotICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgKHNjYW5kaXIgYnVpbGQtcm9v dC1kaXJlY3RvcnkpKSkpKQorICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAg ICAgICBidWlsZC1yb290LWRpcmVjdG9yeSkpKSkpKQogICAgICAgICAgICAgICAgKHNldGVudiAi UFlUSE9OUEFUSCIKLSAgICAgICAgICAgICAgICAgICAgICAgKHN0cmluZy1hcHBlbmQgYnVpbGQg IjoiIChnZXRlbnYgIlBZVEhPTlBBVEgiKSkpCi0gICAgICAgICAgICAgICA7OyBFeGVjdXRhYmxl IHNjcmlwdHMgc3VjaCBhcyAnaW50cm9uX2V4b25fcmVhZHMucHknIG11c3QgYmUKLSAgICAgICAg ICAgICAgIDs7IGF2YWlsYWJsZSBpbiB0aGUgUEFUSC4KLSAgICAgICAgICAgICAgIChzZXRlbnYg IlBBVEgiCi0gICAgICAgICAgICAgICAgICAgICAgIChzdHJpbmctYXBwZW5kIHNjcmlwdHMgIjoi IChnZXRlbnYgIlBBVEgiKSkpKQorICAgICAgICAgICAgICAgICAgICAgICAoc3RyaW5nLWFwcGVu ZCBidWlsZCAiOiIgKGdldGVudiAiUFlUSE9OUEFUSCIpKSkpCiAgICAgICAgICAgICAgOzsgVGhl IHRlc3RzIG5lZWQgdG8gYmUgcnVuIGZyb20gZWxzZXdoZXJlLi4uCiAgICAgICAgICAgICAgKG1r ZGlyLXAgIi90bXAvdGVzdCIpCiAgICAgICAgICAgICAgKGNvcHktcmVjdXJzaXZlbHkgInB5YmVk dG9vbHMvdGVzdCIgIi90bXAvdGVzdCIpCi0tIAoyLjMxLjEKCg== --=-djLtlCJ59+uZ/z0rSwY4-- From unknown Sun Jun 15 08:54:11 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#47821] [PATCH] Update htslib, bcftools, samtools, bedtools Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 29 Apr 2021 06:44:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47821 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Roel Janssen Cc: 47821@debbugs.gnu.org Received: via spool by 47821-submit@debbugs.gnu.org id=B47821.16196786268913 (code B ref 47821); Thu, 29 Apr 2021 06:44:02 +0000 Received: (at 47821) by debbugs.gnu.org; 29 Apr 2021 06:43:46 +0000 Received: from localhost ([127.0.0.1]:54648 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lc0Oo-0002Jg-Cf for submit@debbugs.gnu.org; Thu, 29 Apr 2021 02:43:46 -0400 Received: from flashner.co.il ([178.62.234.194]:54110) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lc0Om-0002JS-3A for 47821@debbugs.gnu.org; Thu, 29 Apr 2021 02:43:44 -0400 Received: from localhost (unknown [31.210.177.125]) by flashner.co.il (Postfix) with ESMTPSA id E68CF401FA; Thu, 29 Apr 2021 06:43:37 +0000 (UTC) Date: Thu, 29 Apr 2021 09:43:35 +0300 From: Efraim Flashner Message-ID: Mail-Followup-To: Efraim Flashner , Roel Janssen , 47821@debbugs.gnu.org References: <9345d6a11fd99f1a8eefeb3664508938255e1287.camel@gnu.org> <63890b0475ea51a1215713195d929ff76b639630.camel@gnu.org> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha512; protocol="application/pgp-signature"; boundary="2Uv/FEvIbMBUf7Mb" Content-Disposition: inline In-Reply-To: <63890b0475ea51a1215713195d929ff76b639630.camel@gnu.org> X-PGP-Key-ID: 0x41AAE7DCCA3D8351 X-PGP-Key: https://flashner.co.il/~efraim/efraim_flashner.asc X-PGP-Fingerprint: A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 X-Spam-Score: -0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --2Uv/FEvIbMBUf7Mb Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable On Wed, Apr 28, 2021 at 04:05:09PM +0200, Roel Janssen wrote: > On Tue, 2021-04-27 at 10:32 +0300, Efraim Flashner wrote: > > On Fri, Apr 16, 2021 at 11:55:39AM +0200, Roel Janssen wrote: > > > Hi Guix, > > >=20 > > > The following patches update htslib, bcftools, samtools, and > > > bedtools. > > > I've succesfully built bedtools with the latest samtools instead of > > > the > > > 1.9 version. > >=20 > > These look good and are ready for merging. Can you take a look at > > python-pybedtools? There's a new version out which I hope builds with > > the newer version of bedtools. > >=20 > > Thanks. > >=20 >=20 > I looked at python-pybedtools and came up with the following patch. > The test phase is still not entirely happy because it ends with: >=20 > --- > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D 497 passed, 3 xfailed, 4= 26 warnings in 25.49s > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > Error in atexit._run_exitfuncs: > Traceback (most recent call last): > File "/gnu/store/rz42ba0my9vrgbkjpkzr2drmnjk5ah50-python- > 3.8.2/lib/python3.8/shutil.py", line 704, in rmtree > orig_st =3D os.lstat(path) > --- >=20 > I attached the patch that I have that at least builds the newer version > of python-pybedtools. I don't know how to further test it. >=20 > Can I in the meantime already push the patches for updating htslib, > bcftools, samtools and bedtools? >=20 Yeah, those patches LGTM. --=20 Efraim Flashner =D7=90=D7=A4=D7=A8=D7=99=D7=9D = =D7=A4=D7=9C=D7=A9=D7=A0=D7=A8 GPG key =3D A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 Confidentiality cannot be guaranteed on emails sent or received unencrypted --2Uv/FEvIbMBUf7Mb Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAABCgAdFiEEoov0DD5VE3JmLRT3Qarn3Mo9g1EFAmCKVZMACgkQQarn3Mo9 g1GkOQ/7Bcn+havSbfk0vW4SFs5DpFfKhlxg2ejfoZU8pODokK4eCO2reCugRxno 2YAe5Aa82K3LoE8mEml0BdQS+5aPrMhduGneHXsGWBfatSD6CVDg1U1hvmYjoVSY 7O5KZAv38iVLFBKLqAj4abnQDVsFctI5qMROo9YbOEitAoH6G3ae7K0l4IZgnYHq +M/6278SDM0rq4q3NklfQ722SVHXhMERr8QN99VN88tNpgysv/66A+8FZ6VaCtk5 HluLp+pp3YftWMS34/qDuXG8G0suJETZ+gKMHDXJqq+qeMg4Xq75SksTeNdGcLna RslLQJl253pmkQbHodXKVtNbG+jh4wrbcfo30x/8gI/FxQecdjFs2vJydV5B6uqZ WW+STVkUUN94z9/ZZSGwMIfIHbakg4TIhG7+TqLQAPv6dtlVuOpVblVYfcz3mTpE 6hw+b9LXqNIuHNMywvGwliYqbWCi2HQxUYlpACx20Ac0jLVtE2ewp/sqoyyeONtl exlxqm4daYsxLpsyzaMCSnZbVhZ7WqWeO7Hi1X7j0rsilJ20klSMxnhI80d4LOYm d19k9b8XwoiNMQ/54vUXnPJWcZta6J2Fra8eBTrCIzl+zVySL3lE5eilIij/FUw+ lq+1foFJikzCsuPUX5BvbUzI3bkCYBJinmM94vvQudZHMlplqH8= =fcRb -----END PGP SIGNATURE----- --2Uv/FEvIbMBUf7Mb-- From unknown Sun Jun 15 08:54:11 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Roel Janssen Subject: bug#47821: closed (Re: [bug#47821] [PATCH] Update htslib, bcftools, samtools, bedtools) Message-ID: References: <42f9d1f0-88d6-beb7-81c1-ef1b0e501ff2@gnu.org> <9345d6a11fd99f1a8eefeb3664508938255e1287.camel@gnu.org> X-Gnu-PR-Message: they-closed 47821 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 47821@debbugs.gnu.org Date: Thu, 29 Apr 2021 10:22:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1619691722-30734-1" This is a multi-part message in MIME format... ------------=_1619691722-30734-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #47821: [PATCH] Update htslib, bcftools, samtools, bedtools which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 47821@debbugs.gnu.org. --=20 47821: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D47821 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1619691722-30734-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 47821-done) by debbugs.gnu.org; 29 Apr 2021 10:21:59 +0000 Received: from localhost ([127.0.0.1]:54894 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lc3ny-0007zT-VG for submit@debbugs.gnu.org; Thu, 29 Apr 2021 06:21:59 -0400 Received: from eggs.gnu.org ([209.51.188.92]:35238) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lc3nx-0007zI-Ik for 47821-done@debbugs.gnu.org; Thu, 29 Apr 2021 06:21:58 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:39444) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lc3nq-0007GD-C7; Thu, 29 Apr 2021 06:21:51 -0400 Received: from [143.121.198.253] (port=56914) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_128_CBC_SHA1:128) (Exim 4.82) (envelope-from ) id 1lc3no-0005ws-Eo; Thu, 29 Apr 2021 06:21:50 -0400 Subject: Re: [bug#47821] [PATCH] Update htslib, bcftools, samtools, bedtools To: Efraim Flashner References: <9345d6a11fd99f1a8eefeb3664508938255e1287.camel@gnu.org> <63890b0475ea51a1215713195d929ff76b639630.camel@gnu.org> From: Roel Janssen Message-ID: <42f9d1f0-88d6-beb7-81c1-ef1b0e501ff2@gnu.org> Date: Thu, 29 Apr 2021 12:21:37 +0200 User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:78.0) Gecko/20100101 Thunderbird/78.7.1 MIME-Version: 1.0 In-Reply-To: Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: 8bit Content-Language: en-US X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 47821-done Cc: 47821-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) On 4/29/21 8:43 AM, Efraim Flashner wrote: > On Wed, Apr 28, 2021 at 04:05:09PM +0200, Roel Janssen wrote: >> On Tue, 2021-04-27 at 10:32 +0300, Efraim Flashner wrote: >>> On Fri, Apr 16, 2021 at 11:55:39AM +0200, Roel Janssen wrote: >>>> Hi Guix, >>>> >>>> The following patches update htslib, bcftools, samtools, and >>>> bedtools. >>>> I've succesfully built bedtools with the latest samtools instead of >>>> the >>>> 1.9 version. >>> These look good and are ready for merging. Can you take a look at >>> python-pybedtools? There's a new version out which I hope builds with >>> the newer version of bedtools. >>> >>> Thanks. >>> >> I looked at python-pybedtools and came up with the following patch. >> The test phase is still not entirely happy because it ends with: >> >> --- >> ================ 497 passed, 3 xfailed, 426 warnings in 25.49s >> ================= >> Error in atexit._run_exitfuncs: >> Traceback (most recent call last): >> File "/gnu/store/rz42ba0my9vrgbkjpkzr2drmnjk5ah50-python- >> 3.8.2/lib/python3.8/shutil.py", line 704, in rmtree >> orig_st = os.lstat(path) >> --- >> >> I attached the patch that I have that at least builds the newer version >> of python-pybedtools. I don't know how to further test it. >> >> Can I in the meantime already push the patches for updating htslib, >> bcftools, samtools and bedtools? >> > Yeah, those patches LGTM. Thanks. I pushed these. For python-pybedtools, I think a little bit more testing is required.  I can take a look at it in the second week of May, so hopefully someone beats me to it. :) Kind regards, Roel Janssen ------------=_1619691722-30734-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 16 Apr 2021 09:55:50 +0000 Received: from localhost ([127.0.0.1]:40066 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lXLCX-0008Uv-H9 for submit@debbugs.gnu.org; Fri, 16 Apr 2021 05:55:50 -0400 Received: from lists.gnu.org ([209.51.188.17]:48572) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lXLCT-0008Uh-9G for submit@debbugs.gnu.org; Fri, 16 Apr 2021 05:55:48 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:49192) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lXLCS-0006wW-W8 for guix-patches@gnu.org; Fri, 16 Apr 2021 05:55:45 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:57238) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lXLCS-0003L1-PN for guix-patches@gnu.org; Fri, 16 Apr 2021 05:55:44 -0400 Received: from 2001-1c02-0b18-2900-222e-248e-9586-e52d.cable.dynamic.v6.ziggo.nl ([2001:1c02:b18:2900:222e:248e:9586:e52d]:48092) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1lXLCP-0002sD-Tk for guix-patches@gnu.org; Fri, 16 Apr 2021 05:55:44 -0400 Message-ID: <9345d6a11fd99f1a8eefeb3664508938255e1287.camel@gnu.org> Subject: [PATCH] Update htslib, bcftools, samtools, bedtools From: Roel Janssen To: guix-patches@gnu.org Date: Fri, 16 Apr 2021 11:55:39 +0200 Content-Type: multipart/mixed; boundary="=-oNWaDSLvzxxygzL4N0vk" User-Agent: Evolution 3.38.4 (3.38.4-1.fc33) MIME-Version: 1.0 X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) --=-oNWaDSLvzxxygzL4N0vk Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 7bit Hi Guix, The following patches update htslib, bcftools, samtools, and bedtools. I've succesfully built bedtools with the latest samtools instead of the 1.9 version. Kind regards, Roel Janssen --=-oNWaDSLvzxxygzL4N0vk Content-Disposition: attachment; filename="0004-gnu-Update-bedtools-to-2.30.0.patch" Content-Type: text/x-patch; name="0004-gnu-Update-bedtools-to-2.30.0.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSA0NTQ5ZjYyMjA0MmNiOGMwNDE2NWQ4NWZmOTIyZDEyOWY3YzEwNTUzIE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBSb2VsIEphbnNzZW4gPHJvZWxAZ251Lm9yZz4KRGF0ZTogRnJp LCAxNiBBcHIgMjAyMSAxMTo1MjoxNiArMDIwMApTdWJqZWN0OiBbUEFUQ0ggNC80XSBnbnU6IFVw ZGF0ZSBiZWR0b29scyB0byAyLjMwLjAuCgoqIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5z Y20gKGJlZHRvb2xzKTogVXBkYXRlIHRvIDIuMzAuMCwKICBbaW5wdXRzXTogVXNlIGxhdGVzdCBz YW10b29scy4KLS0tCiBnbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2NtIHwgNiArKystLS0K IDEgZmlsZSBjaGFuZ2VkLCAzIGluc2VydGlvbnMoKyksIDMgZGVsZXRpb25zKC0pCgpkaWZmIC0t Z2l0IGEvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbSBiL2dudS9wYWNrYWdlcy9iaW9p bmZvcm1hdGljcy5zY20KaW5kZXggMmEyMDk3MTA4OS4uOTRiZjkxN2RmNSAxMDA2NDQKLS0tIGEv Z251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbQorKysgYi9nbnUvcGFja2FnZXMvYmlvaW5m b3JtYXRpY3Muc2NtCkBAIC00NTMsNyArNDUzLDcgQEAgY29tcHV0YXRpb25hbCBjbHVzdGVyLiIp CiAoZGVmaW5lLXB1YmxpYyBiZWR0b29scwogICAocGFja2FnZQogICAgIChuYW1lICJiZWR0b29s cyIpCi0gICAgKHZlcnNpb24gIjIuMjkuMiIpCisgICAgKHZlcnNpb24gIjIuMzAuMCIpCiAgICAg KHNvdXJjZSAob3JpZ2luCiAgICAgICAgICAgICAgIChtZXRob2QgdXJsLWZldGNoKQogICAgICAg ICAgICAgICAodXJpIChzdHJpbmctYXBwZW5kICJodHRwczovL2dpdGh1Yi5jb20vYXJxNXgvYmVk dG9vbHMyL3JlbGVhc2VzLyIKQEAgLTQ2MSw3ICs0NjEsNyBAQCBjb21wdXRhdGlvbmFsIGNsdXN0 ZXIuIikKICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAiYmVkdG9vbHMtIiB2ZXJz aW9uICIudGFyLmd6IikpCiAgICAgICAgICAgICAgIChzaGEyNTYKICAgICAgICAgICAgICAgIChi YXNlMzIKLSAgICAgICAgICAgICAgICAiMG0zaGs2NTQ4ODQ2dzgzYTlzNWRyc2N6dnk2N24yYXp4 NDFrajcxbjAza2xiMmdiendnMyIpKSkpCisgICAgICAgICAgICAgICAgIjFmMmhoNzlsN2RuMTQ3 YzJ4eWZnZjV3Zmp2bHFmdzMya2pmbm5oMm4xcXk2cnB6eDJmaWsiKSkpKQogICAgIChidWlsZC1z eXN0ZW0gZ251LWJ1aWxkLXN5c3RlbSkKICAgICAoYXJndW1lbnRzCiAgICAgICcoIzp0ZXN0LXRh cmdldCAidGVzdCIKQEAgLTQ3Myw3ICs0NzMsNyBAQCBjb21wdXRhdGlvbmFsIGNsdXN0ZXIuIikK ICAgICAobmF0aXZlLWlucHV0cwogICAgICBgKCgicHl0aG9uIiAscHl0aG9uLXdyYXBwZXIpKSkK ICAgICAoaW5wdXRzCi0gICAgIGAoKCJzYW10b29scyIgLHNhbXRvb2xzLTEuOSkKKyAgICAgYCgo InNhbXRvb2xzIiAsc2FtdG9vbHMpCiAgICAgICAgKCJ6bGliIiAsemxpYikpKQogICAgIChob21l LXBhZ2UgImh0dHBzOi8vZ2l0aHViLmNvbS9hcnE1eC9iZWR0b29sczIiKQogICAgIChzeW5vcHNp cyAiVG9vbHMgZm9yIGdlbm9tZSBhbmFseXNpcyBhbmQgYXJpdGhtZXRpYyIpCi0tIAoyLjMwLjIK Cg== --=-oNWaDSLvzxxygzL4N0vk Content-Disposition: attachment; filename="0003-gnu-Update-samtools-to-1.12.patch" Content-Type: text/x-patch; name="0003-gnu-Update-samtools-to-1.12.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSA2YTE4YmQwNWNkZDE4MWIxOWFiOTlmOTJmMWVmODdmMTU1NGM2MjJkIE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBSb2VsIEphbnNzZW4gPHJvZWxAZ251Lm9yZz4KRGF0ZTogRnJp LCAxNiBBcHIgMjAyMSAxMTo1MTo0MSArMDIwMApTdWJqZWN0OiBbUEFUQ0ggMy80XSBnbnU6IFVw ZGF0ZSBzYW10b29scyB0byAxLjEyLgoKKiBnbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2Nt IChzYW10b29scyk6IFVwZGF0ZSB0byAxLjEyLgotLS0KIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1h dGljcy5zY20gfCA2ICsrKy0tLQogMSBmaWxlIGNoYW5nZWQsIDMgaW5zZXJ0aW9ucygrKSwgMyBk ZWxldGlvbnMoLSkKCmRpZmYgLS1naXQgYS9nbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2Nt IGIvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbQppbmRleCBhN2NmZmRmODNjLi4yYTIw OTcxMDg5IDEwMDY0NAotLS0gYS9nbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2NtCisrKyBi L2dudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20KQEAgLTU5MDEsNyArNTkwMSw3IEBAIHRv IHRoZSB1c2VyJ3MgcXVlcnkgb2YgaW50ZXJlc3QuIikKIChkZWZpbmUtcHVibGljIHNhbXRvb2xz CiAgIChwYWNrYWdlCiAgICAgKG5hbWUgInNhbXRvb2xzIikKLSAgICAodmVyc2lvbiAiMS4xMSIp CisgICAgKHZlcnNpb24gIjEuMTIiKQogICAgIChzb3VyY2UKICAgICAgKG9yaWdpbgogICAgICAg IChtZXRob2QgdXJsLWZldGNoKQpAQCAtNTkxMCwxMSArNTkxMCwxMSBAQCB0byB0aGUgdXNlcidz IHF1ZXJ5IG9mIGludGVyZXN0LiIpCiAgICAgICAgICAgICAgICAgICAgICAgIHZlcnNpb24gIi9z YW10b29scy0iIHZlcnNpb24gIi50YXIuYnoyIikpCiAgICAgICAgKHNoYTI1NgogICAgICAgICAo YmFzZTMyCi0gICAgICAgICAiMWRwNXdrbmFrNGFybnc1Z2hoaWY5bW1samxmbnc1YmdtOTF3aWI3 ejBqOHdkanl3eDB6MiIpKQorICAgICAgICAgIjFqcmRqMmlkcG1hNWphOWNnMHJyNzNiNTY1dmRi cjl3eXk2emlnNTRiaWRpY2MycGc4dmQiKSkKICAgICAgICAobW9kdWxlcyAnKChndWl4IGJ1aWxk IHV0aWxzKSkpCiAgICAgICAgKHNuaXBwZXQgJyhiZWdpbgogICAgICAgICAgICAgICAgICAgIDs7 IERlbGV0ZSBidW5kbGVkIGh0c2xpYi4KLSAgICAgICAgICAgICAgICAgICAoZGVsZXRlLWZpbGUt cmVjdXJzaXZlbHkgImh0c2xpYi0xLjExIikKKyAgICAgICAgICAgICAgICAgICAoZGVsZXRlLWZp bGUtcmVjdXJzaXZlbHkgImh0c2xpYi0xLjEyIikKICAgICAgICAgICAgICAgICAgICAjdCkpKSkK ICAgICAoYnVpbGQtc3lzdGVtIGdudS1idWlsZC1zeXN0ZW0pCiAgICAgKGFyZ3VtZW50cwotLSAK Mi4zMC4yCgo= --=-oNWaDSLvzxxygzL4N0vk Content-Disposition: attachment; filename="0002-gnu-Update-bcftools-to-1.12.patch" Content-Type: text/x-patch; name="0002-gnu-Update-bcftools-to-1.12.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSBmMTUxM2Q3YjQzZmExNGUxNWQ5NDVjOTJmYjlmYTJjNjQ1MWE0NmI5IE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBSb2VsIEphbnNzZW4gPHJvZWxAZ251Lm9yZz4KRGF0ZTogRnJp LCAxNiBBcHIgMjAyMSAxMTo1MDo1MyArMDIwMApTdWJqZWN0OiBbUEFUQ0ggMi80XSBnbnU6IFVw ZGF0ZSBiY2Z0b29scyB0byAxLjEyLgoKKiBnbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2Nt IChiY2Z0b29scyk6IFVwZGF0ZSB0byAxLjEyLgotLS0KIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1h dGljcy5zY20gfCA2ICsrKy0tLQogMSBmaWxlIGNoYW5nZWQsIDMgaW5zZXJ0aW9ucygrKSwgMyBk ZWxldGlvbnMoLSkKCmRpZmYgLS1naXQgYS9nbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2Nt IGIvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbQppbmRleCBlMzg1ZTA3Y2VhLi5hN2Nm ZmRmODNjIDEwMDY0NAotLS0gYS9nbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2NtCisrKyBi L2dudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20KQEAgLTMyNyw3ICszMjcsNyBAQCBCQU0g ZmlsZXMuIikKIChkZWZpbmUtcHVibGljIGJjZnRvb2xzCiAgIChwYWNrYWdlCiAgICAgKG5hbWUg ImJjZnRvb2xzIikKLSAgICAodmVyc2lvbiAiMS4xMSIpCisgICAgKHZlcnNpb24gIjEuMTIiKQog ICAgIChzb3VyY2UgKG9yaWdpbgogICAgICAgICAgICAgICAobWV0aG9kIHVybC1mZXRjaCkKICAg ICAgICAgICAgICAgKHVyaSAoc3RyaW5nLWFwcGVuZCAiaHR0cHM6Ly9naXRodWIuY29tL3NhbXRv b2xzL2JjZnRvb2xzLyIKQEAgLTMzNSwxMSArMzM1LDExIEBAIEJBTSBmaWxlcy4iKQogICAgICAg ICAgICAgICAgICAgICAgICAgICAgICAgICAgIHZlcnNpb24gIi9iY2Z0b29scy0iIHZlcnNpb24g Ii50YXIuYnoyIikpCiAgICAgICAgICAgICAgIChzaGEyNTYKICAgICAgICAgICAgICAgIChiYXNl MzIKLSAgICAgICAgICAgICAgICAiMHI1MDhtcDE1cHF6ZjhyMTI2OWtiNHY1bmF3OXpzdmJ3ZDNj ejhzMXlqN2NhcnNmOXZpdyIpKQorICAgICAgICAgICAgICAgICIxeDk0bDFoeTJwaTNsYnowc3hs YncwZzZxNXo1YXBjcmhybGN3ZGE5NG5zOW40cjZhM2tzIikpCiAgICAgICAgICAgICAgIChtb2R1 bGVzICcoKGd1aXggYnVpbGQgdXRpbHMpKSkKICAgICAgICAgICAgICAgKHNuaXBwZXQgJyhiZWdp bgogICAgICAgICAgICAgICAgICAgICAgICAgICA7OyBEZWxldGUgYnVuZGxlZCBodHNsaWIuCi0g ICAgICAgICAgICAgICAgICAgICAgICAgIChkZWxldGUtZmlsZS1yZWN1cnNpdmVseSAiaHRzbGli LTEuMTEiKQorICAgICAgICAgICAgICAgICAgICAgICAgICAoZGVsZXRlLWZpbGUtcmVjdXJzaXZl bHkgImh0c2xpYi0xLjEyIikKICAgICAgICAgICAgICAgICAgICAgICAgICAgI3QpKSkpCiAgICAg KGJ1aWxkLXN5c3RlbSBnbnUtYnVpbGQtc3lzdGVtKQogICAgIChhcmd1bWVudHMKLS0gCjIuMzAu MgoK --=-oNWaDSLvzxxygzL4N0vk Content-Disposition: attachment; filename="0001-gnu-htslib-Update-to-1.12.patch" Content-Type: text/x-patch; name="0001-gnu-htslib-Update-to-1.12.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSA0NWU1Nzg5NzZjZDBjNzdlNjBkMjE4ODM4NWFkY2RhNTFiMjNiOTJhIE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBSb2VsIEphbnNzZW4gPHJvZWxAZ251Lm9yZz4KRGF0ZTogRnJp LCAxNiBBcHIgMjAyMSAxMTo0OTo0OSArMDIwMApTdWJqZWN0OiBbUEFUQ0ggMS80XSBnbnU6IGh0 c2xpYjogVXBkYXRlIHRvIDEuMTIuCgoqIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20g KGh0c2xpYik6IFVwZGF0ZSB0byAxLjEyLgotLS0KIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGlj cy5zY20gfCA0ICsrLS0KIDEgZmlsZSBjaGFuZ2VkLCAyIGluc2VydGlvbnMoKyksIDIgZGVsZXRp b25zKC0pCgpkaWZmIC0tZ2l0IGEvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbSBiL2du dS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20KaW5kZXggNDFlZjRjZDUxMy4uZTM4NWUwN2Nl YSAxMDA2NDQKLS0tIGEvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbQorKysgYi9nbnUv cGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2NtCkBAIC00NDc2LDcgKzQ0NzYsNyBAQCBwZXJmb3Jt YW5jZS4iKQogKGRlZmluZS1wdWJsaWMgaHRzbGliCiAgIChwYWNrYWdlCiAgICAgKG5hbWUgImh0 c2xpYiIpCi0gICAgKHZlcnNpb24gIjEuMTEiKQorICAgICh2ZXJzaW9uICIxLjEyIikKICAgICAo c291cmNlIChvcmlnaW4KICAgICAgICAgICAgICAgKG1ldGhvZCB1cmwtZmV0Y2gpCiAgICAgICAg ICAgICAgICh1cmkgKHN0cmluZy1hcHBlbmQKQEAgLTQ0ODQsNyArNDQ4NCw3IEBAIHBlcmZvcm1h bmNlLiIpCiAgICAgICAgICAgICAgICAgICAgIHZlcnNpb24gIi9odHNsaWItIiB2ZXJzaW9uICIu dGFyLmJ6MiIpKQogICAgICAgICAgICAgICAoc2hhMjU2CiAgICAgICAgICAgICAgICAoYmFzZTMy Ci0gICAgICAgICAgICAgICAgIjFtcnE0bWloengzN3lxaGozc2Z6NmRhNm13NDluaWlhODA4Ynpz dzJna2tnbWFkeHZ5bmciKSkpKQorICAgICAgICAgICAgICAgICIxanBsbnZpemdyMGZ5eXZ2bWtm bW5zeXdycnBxaGlkMzc2MHZ3MTVibGx6OThxZGk5MDEyIikpKSkKICAgICAoYnVpbGQtc3lzdGVt IGdudS1idWlsZC1zeXN0ZW0pCiAgICAgOzsgTGV0IGh0c2xpYiB0cmFuc2xhdGUgImdzOi8vIiBh bmQgInMzOi8vIiB0byByZWd1bGFyIGh0dHBzIGxpbmtzIHdpdGgKICAgICA7OyAiLS1lbmFibGUt Z2NzIiBhbmQgIi0tZW5hYmxlLXMzIi4gRm9yIHRoZXNlIG9wdGlvbnMgdG8gd29yaywgd2UgYWxz bwotLSAKMi4zMC4yCgo= --=-oNWaDSLvzxxygzL4N0vk-- ------------=_1619691722-30734-1--