From unknown Sun Jun 22 07:51:40 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#47796] [PATCH] gnu: Add python-mappy. Resent-From: Roel Janssen Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 15 Apr 2021 13:14:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 47796 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47796@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.1618492387659 (code B ref -1); Thu, 15 Apr 2021 13:14:02 +0000 Received: (at submit) by debbugs.gnu.org; 15 Apr 2021 13:13:07 +0000 Received: from localhost ([127.0.0.1]:36730 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lX1nq-0000AM-Bj for submit@debbugs.gnu.org; Thu, 15 Apr 2021 09:13:07 -0400 Received: from lists.gnu.org ([209.51.188.17]:57714) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lX1no-0000A3-94 for submit@debbugs.gnu.org; Thu, 15 Apr 2021 09:13:01 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:58356) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lX1no-0007AZ-2C for guix-patches@gnu.org; Thu, 15 Apr 2021 09:13:00 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:35276) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lX1nn-0006tY-Qo for guix-patches@gnu.org; Thu, 15 Apr 2021 09:12:59 -0400 Received: from [143.121.198.253] (port=55116) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_128_CBC_SHA1:128) (Exim 4.82) (envelope-from ) id 1lX1nn-0003XE-90 for guix-patches@gnu.org; Thu, 15 Apr 2021 09:12:59 -0400 From: Roel Janssen Message-ID: <2e1eb9cd-ee87-32fb-c720-b0824441f54e@gnu.org> Date: Thu, 15 Apr 2021 15:12:53 +0200 User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:78.0) Gecko/20100101 Thunderbird/78.7.1 MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="------------02AAFD785376B77D38C31255" Content-Language: en-US X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) This is a multi-part message in MIME format. --------------02AAFD785376B77D38C31255 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: 7bit Hi Guix, Here's a patch for python-mappy. Cheers, Roel --------------02AAFD785376B77D38C31255 Content-Type: text/x-patch; charset=UTF-8; name="0001-gnu-Add-python-mappy.patch" Content-Transfer-Encoding: 8bit Content-Disposition: attachment; filename="0001-gnu-Add-python-mappy.patch" >From d2df153a97eb326cbb72c556ffbd821877e9419a Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Thu, 15 Apr 2021 15:09:59 +0200 Subject: [PATCH] gnu: Add python-mappy. * gnu/packages/python-xyz.scm (python-mappy): New variable. --- gnu/packages/python-xyz.scm | 24 +++++++++++++++++++++++- 1 file changed, 23 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 9d115790e1..5a4220541e 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -39,7 +39,7 @@ ;;; Copyright © 2017 Ben Sturmfels ;;; Copyright © 2017, 2018, 2019 Mathieu Othacehe ;;; Copyright © 2017 José Miguel Sánchez García -;;; Copyright © 2017, 2020 Roel Janssen +;;; Copyright © 2017, 2020, 2021 Roel Janssen ;;; Copyright © 2017, 2018, 2019 Kei Kebreau ;;; Copyright © 2017 Rutger Helling ;;; Copyright © 2017 Muriithi Frederick Muriuki @@ -2020,6 +2020,28 @@ information created by most SVG editors. Optimization options are typically lossless but can be tweaked for more aggressive cleaning.") (license license:asl2.0))) +(define-public python-mappy + (package + (name "python-mappy") + (version "2.18") + (source (origin + (method url-fetch) + (uri (pypi-uri "mappy" version)) + (sha256 + (base32 + "1a05p7rkmxa6qhm108na8flzj2v45jab06drk59kzk1ip2sgvzqq")))) + (build-system python-build-system) + (native-inputs + `(("python-cython" ,python-cython))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/lh3/minimap2") + (synopsis "Python binding for minimap2") + (description "This package provides a convenient interface to minimap2, +a fast and accurate C program to align genomic and transcribe nucleotide +sequences.") + (license license:expat))) + (define-public python-mechanize (package (name "python-mechanize") -- 2.30.2 --------------02AAFD785376B77D38C31255-- From unknown Sun Jun 22 07:51:40 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#47796] [PATCH] gnu: Add python-mappy. Resent-From: Leo Famulari Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 15 Apr 2021 17:10:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47796 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Roel Janssen Cc: 47796@debbugs.gnu.org Received: via spool by 47796-submit@debbugs.gnu.org id=B47796.161850657626275 (code B ref 47796); Thu, 15 Apr 2021 17:10:01 +0000 Received: (at 47796) by debbugs.gnu.org; 15 Apr 2021 17:09:36 +0000 Received: from localhost ([127.0.0.1]:39097 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lX5Um-0006pj-B4 for submit@debbugs.gnu.org; Thu, 15 Apr 2021 13:09:36 -0400 Received: from out5-smtp.messagingengine.com ([66.111.4.29]:41663) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lX5Uk-0006pU-DD for 47796@debbugs.gnu.org; Thu, 15 Apr 2021 13:09:34 -0400 Received: from compute3.internal (compute3.nyi.internal [10.202.2.43]) by mailout.nyi.internal (Postfix) with ESMTP id 60B0C5C00F3; Thu, 15 Apr 2021 13:09:29 -0400 (EDT) Received: from mailfrontend2 ([10.202.2.163]) by compute3.internal (MEProxy); Thu, 15 Apr 2021 13:09:29 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=famulari.name; h=date:from:to:cc:subject:message-id:references:mime-version :content-type:in-reply-to; s=mesmtp; bh=bh68jvqClxHIvwnowaI7h+Ux nLd5iGAHh6njZjI304U=; b=lUKymF3ULSrsQ7wsHTUkAXjrh4FaMw5OLt5JUWA5 M64faVWo1BvXJ2JklkEcOpK1m1nk+QOtuPyuwLjzFlzH0li5EYZXNzlc/0SUVSwi q260IPFpiUGZEtjorSk4rG56QWpm+ldX8I79hHrCwqlP/cnRHTk2Q62+1tAzffOS E9I= DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-type:date:from:in-reply-to :message-id:mime-version:references:subject:to:x-me-proxy :x-me-proxy:x-me-sender:x-me-sender:x-sasl-enc; s=fm2; bh=bh68jv qClxHIvwnowaI7h+UxnLd5iGAHh6njZjI304U=; b=HBVTGtf4EhdABnkx8pRzcP H5OAN38S6VNXqLnRGyr9PvYPwJnLxNb68+RXIzaurn8X9e0sUP+kZqwEcrWJdYzL bMBmHN5UpmkDwa/eZOlL9mQzY7sTgAntz88upGxN9tU2qIYr+YqH5HXFMtZ+u0yQ bFkjJMuHj57jaL2YKfmnIVSToQdd1mbft0AyapIhTSQzxCNQ3bknKxQAjgE5C9vW zzOVSJ6S3Rv2ByK2Hlf4TnxBcAlhfgLXHrpvvlFdF8iZ6SDkbrEU1LmhoF4n3Az6 kUsj13IBmZ5clN3JhP3us4M2INW+W+bhc1L3AG8pjoY4AhRAUHv0u21HkzOQ1vqw == X-ME-Sender: X-ME-Proxy-Cause: gggruggvucftvghtrhhoucdtuddrgeduledrudelfedguddugecutefuodetggdotefrod ftvfcurfhrohhfihhlvgemucfhrghsthforghilhdpqfgfvfdpuffrtefokffrpgfnqfgh necuuegrihhlohhuthemuceftddtnecusecvtfgvtghiphhivghnthhsucdlqddutddtmd enucfjughrpeffhffvuffkfhggtggujgesthdtredttddtvdenucfhrhhomhepnfgvohcu hfgrmhhulhgrrhhiuceolhgvohesfhgrmhhulhgrrhhirdhnrghmvgeqnecuggftrfgrth htvghrnhepueekkedtffdvtddugeejgedtvefhueefiedvjeeitdeigedtveejvdejheff vefgnecukfhppedutddtrdduuddrudeiledruddukeenucevlhhushhtvghrufhiiigvpe dtnecurfgrrhgrmhepmhgrihhlfhhrohhmpehlvghosehfrghmuhhlrghrihdrnhgrmhgv X-ME-Proxy: Received: from localhost (pool-100-11-169-118.phlapa.fios.verizon.net [100.11.169.118]) by mail.messagingengine.com (Postfix) with ESMTPA id 0651E1080057; Thu, 15 Apr 2021 13:09:29 -0400 (EDT) Date: Thu, 15 Apr 2021 13:09:27 -0400 From: Leo Famulari Message-ID: References: <2e1eb9cd-ee87-32fb-c720-b0824441f54e@gnu.org> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline In-Reply-To: <2e1eb9cd-ee87-32fb-c720-b0824441f54e@gnu.org> X-Spam-Score: -0.7 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) > From d2df153a97eb326cbb72c556ffbd821877e9419a Mon Sep 17 00:00:00 2001 > From: Roel Janssen > Date: Thu, 15 Apr 2021 15:09:59 +0200 > Subject: [PATCH] gnu: Add python-mappy. > > * gnu/packages/python-xyz.scm (python-mappy): New variable. Thanks! LGTM From unknown Sun Jun 22 07:51:40 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Roel Janssen Subject: bug#47796: closed (Re: [bug#47796] [PATCH] gnu: Add python-mappy.) Message-ID: References: <747c4247f44c46ced095dc1586adf95a4f90e521.camel@gnu.org> <2e1eb9cd-ee87-32fb-c720-b0824441f54e@gnu.org> X-Gnu-PR-Message: they-closed 47796 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 47796@debbugs.gnu.org Date: Fri, 16 Apr 2021 09:27:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1618565222-30036-1" This is a multi-part message in MIME format... ------------=_1618565222-30036-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #47796: [PATCH] gnu: Add python-mappy. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 47796@debbugs.gnu.org. --=20 47796: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D47796 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1618565222-30036-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 47796-done) by debbugs.gnu.org; 16 Apr 2021 09:26:34 +0000 Received: from localhost ([127.0.0.1]:40047 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lXKkE-0007nj-Fj for submit@debbugs.gnu.org; Fri, 16 Apr 2021 05:26:34 -0400 Received: from eggs.gnu.org ([209.51.188.92]:59858) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lXKkC-0007nW-7I for 47796-done@debbugs.gnu.org; Fri, 16 Apr 2021 05:26:33 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:55245) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lXKk6-0002IP-Ug; Fri, 16 Apr 2021 05:26:26 -0400 Received: from 2001-1c02-0b18-2900-222e-248e-9586-e52d.cable.dynamic.v6.ziggo.nl ([2001:1c02:b18:2900:222e:248e:9586:e52d]:47678) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1lXKk6-00061d-5d; Fri, 16 Apr 2021 05:26:26 -0400 Message-ID: <747c4247f44c46ced095dc1586adf95a4f90e521.camel@gnu.org> Subject: Re: [bug#47796] [PATCH] gnu: Add python-mappy. From: Roel Janssen To: Leo Famulari Date: Fri, 16 Apr 2021 11:26:22 +0200 In-Reply-To: References: <2e1eb9cd-ee87-32fb-c720-b0824441f54e@gnu.org> Content-Type: text/plain; charset="UTF-8" User-Agent: Evolution 3.38.4 (3.38.4-1.fc33) MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 47796-done Cc: 47796-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) On Thu, 2021-04-15 at 13:09 -0400, Leo Famulari wrote: > > From d2df153a97eb326cbb72c556ffbd821877e9419a Mon Sep 17 00:00:00 > > 2001 > > From: Roel Janssen > > Date: Thu, 15 Apr 2021 15:09:59 +0200 > > Subject: [PATCH] gnu: Add python-mappy. > > > > * gnu/packages/python-xyz.scm (python-mappy): New variable. > > Thanks! LGTM > Thanks! Pushed in 44f9432705d04c069a8acf9e37e3ad856ac0bf82. ------------=_1618565222-30036-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 15 Apr 2021 13:13:07 +0000 Received: from localhost ([127.0.0.1]:36730 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lX1nq-0000AM-Bj for submit@debbugs.gnu.org; Thu, 15 Apr 2021 09:13:07 -0400 Received: from lists.gnu.org ([209.51.188.17]:57714) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lX1no-0000A3-94 for submit@debbugs.gnu.org; Thu, 15 Apr 2021 09:13:01 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:58356) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lX1no-0007AZ-2C for guix-patches@gnu.org; Thu, 15 Apr 2021 09:13:00 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:35276) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lX1nn-0006tY-Qo for guix-patches@gnu.org; Thu, 15 Apr 2021 09:12:59 -0400 Received: from [143.121.198.253] (port=55116) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_128_CBC_SHA1:128) (Exim 4.82) (envelope-from ) id 1lX1nn-0003XE-90 for guix-patches@gnu.org; Thu, 15 Apr 2021 09:12:59 -0400 To: guix-patches@gnu.org From: Roel Janssen Subject: [PATCH] gnu: Add python-mappy. Message-ID: <2e1eb9cd-ee87-32fb-c720-b0824441f54e@gnu.org> Date: Thu, 15 Apr 2021 15:12:53 +0200 User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:78.0) Gecko/20100101 Thunderbird/78.7.1 MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="------------02AAFD785376B77D38C31255" Content-Language: en-US X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) This is a multi-part message in MIME format. --------------02AAFD785376B77D38C31255 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: 7bit Hi Guix, Here's a patch for python-mappy. Cheers, Roel --------------02AAFD785376B77D38C31255 Content-Type: text/x-patch; charset=UTF-8; name="0001-gnu-Add-python-mappy.patch" Content-Transfer-Encoding: 8bit Content-Disposition: attachment; filename="0001-gnu-Add-python-mappy.patch" >From d2df153a97eb326cbb72c556ffbd821877e9419a Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Thu, 15 Apr 2021 15:09:59 +0200 Subject: [PATCH] gnu: Add python-mappy. * gnu/packages/python-xyz.scm (python-mappy): New variable. --- gnu/packages/python-xyz.scm | 24 +++++++++++++++++++++++- 1 file changed, 23 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 9d115790e1..5a4220541e 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -39,7 +39,7 @@ ;;; Copyright © 2017 Ben Sturmfels ;;; Copyright © 2017, 2018, 2019 Mathieu Othacehe ;;; Copyright © 2017 José Miguel Sánchez García -;;; Copyright © 2017, 2020 Roel Janssen +;;; Copyright © 2017, 2020, 2021 Roel Janssen ;;; Copyright © 2017, 2018, 2019 Kei Kebreau ;;; Copyright © 2017 Rutger Helling ;;; Copyright © 2017 Muriithi Frederick Muriuki @@ -2020,6 +2020,28 @@ information created by most SVG editors. Optimization options are typically lossless but can be tweaked for more aggressive cleaning.") (license license:asl2.0))) +(define-public python-mappy + (package + (name "python-mappy") + (version "2.18") + (source (origin + (method url-fetch) + (uri (pypi-uri "mappy" version)) + (sha256 + (base32 + "1a05p7rkmxa6qhm108na8flzj2v45jab06drk59kzk1ip2sgvzqq")))) + (build-system python-build-system) + (native-inputs + `(("python-cython" ,python-cython))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/lh3/minimap2") + (synopsis "Python binding for minimap2") + (description "This package provides a convenient interface to minimap2, +a fast and accurate C program to align genomic and transcribe nucleotide +sequences.") + (license license:expat))) + (define-public python-mechanize (package (name "python-mechanize") -- 2.30.2 --------------02AAFD785376B77D38C31255-- ------------=_1618565222-30036-1--