From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 08 16:42:36 2021 Received: (at submit) by debbugs.gnu.org; 8 Apr 2021 20:42:36 +0000 Received: from localhost ([127.0.0.1]:48427 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lUbU4-0001iu-0T for submit@debbugs.gnu.org; Thu, 08 Apr 2021 16:42:36 -0400 Received: from lists.gnu.org ([209.51.188.17]:58718) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lUbU0-0001il-Ga for submit@debbugs.gnu.org; Thu, 08 Apr 2021 16:42:34 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:58162) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lUbU0-0001Cs-27 for bug-guix@gnu.org; Thu, 08 Apr 2021 16:42:32 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21197) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lUbTx-0000bR-LT for bug-guix@gnu.org; Thu, 08 Apr 2021 16:42:31 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1617914546; cv=none; d=zohomail.com; s=zohoarc; b=cprTynFis6WaiiWIzf2+nw/QnZwaBMgnrGH6ghqDYusiX2yip9/BKuiHlKwjBDylnOeMlkRKOmRTYrK1Nf83PXoneO9VSU0VlRiUQaTE+zrtQ6zPuZ2NUYYRx3tA2UPqhwo5hOh302jd3TwYdwKT8+xsO8nEzKzjfPxkKPkgl7k= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1617914546; h=Content-Type:Content-Transfer-Encoding:Date:From:MIME-Version:Message-ID:Subject:To; bh=cZP+B+m8Q7l2vc8dajYpi2gytQ0uRXvsFvme6EpTnyc=; b=RnCuHJDM9Hr46PNsJimkjE0ITKkd2dE47cseaxCfhT0UnD01TvJG8EenGZvofb1cCnsDNuxxdny5qvDhKEuSuh3RtYpotWZnVtnuUqSYFrwut7Fhv6anK0vjsryhhK4nan/hoUk0d0Oae6OzPO4FI+eGzRhlHMxQHJD0XpsAaas= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1617914546; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:To:Subject:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=cZP+B+m8Q7l2vc8dajYpi2gytQ0uRXvsFvme6EpTnyc=; b=RAdGfjoqrRuaySTHSPXwr510FWeJfYAsyvxA31i1dCZKRakUKrIJfskukT3n3WgK Hpxy7VEea2dIw/PiPsBtFH2+jfnAy+lX3drcMH/99nn2YNx7ZHj57CmDWI6F/iXrRAq izzqg+HQheUrblXB3Ok9b46f888caIgERzbEOu0M= Received: from localhost (p54ad4c52.dip0.t-ipconnect.de [84.173.76.82]) by mx.zohomail.com with SMTPS id 1617914543630667.6965273401381; Thu, 8 Apr 2021 13:42:23 -0700 (PDT) User-agent: mu4e 1.4.15; emacs 27.2 From: Ricardo Wurmus To: bug-guix@gnu.org Subject: CRAN importer does not parse =?utf-8?B?4oCcUmVtb3Rlc+KAnQ==?= field. X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Thu, 08 Apr 2021 22:42:20 +0200 Message-ID: <87a6q8y0cz.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External Received-SPF: pass client-ip=136.143.188.51; envelope-from=rekado@elephly.net; helo=sender4-of-o51.zoho.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H3=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) The CRAN importer can be used to import packages from CRAN and Bioconductor, but also from arbitrary git and hg repositories. Especially for code published as a git/hg repository the =E2=80=9CRemotes= =E2=80=9D field of the DESCRIPTION file can be important. The bedtorch[1] package, for example, has a DESCRIPTION file like this: --8<---------------cut here---------------start------------->8--- Package: bedtorch Type: Package Title: R package for fast BED-file manipulation Version: 0.1.8 Authors@R:=20 person(given =3D "Haizi", family =3D "Zheng", role =3D c("aut", "cre"), email =3D "haizi.zh@gmail.com") Description: The goal of bedtorch is to provide a fast BED file manipulatio= n tool suite native in R. License: MIT + file LICENSE Encoding: UTF-8 LazyData: true Roxygen: list(markdown =3D TRUE) RoxygenNote: 7.1.1 Depends: R (>=3D 4.0) Imports:=20 stringr, dplyr, purrr, tidyr, data.table, R.utils, assertthat, Rcpp, Rhtslib12, RCurl Suggests:=20 testthat (>=3D 3.0.0), devtools (>=3D 2.3.0), zoo Config/testthat/edition: 3 URL: https://github.com/haizi-zh/bedtorch BugRePORTS: https://github.com/haizi-zh/bedtorch/issues BiocType: Software Remotes:=20 haizi-zh/Rhtslib12 LinkingTo:=20 Rcpp, Rhtslib12 SystemRequirements: GNU make --8<---------------cut here---------------end--------------->8--- The =E2=80=9CRemotes=E2=80=9D field specifies the origin for the Rhtslib fo= rk. The importer should probably try to import the packages from the =E2=80=9CRemot= es=E2=80=9D field first. --=20 Ricardo