GNU bug report logs - #47171
[PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).

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Message #8 received at 47171 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 47171 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 01/10] gnu: r-limma: Move to (gnu packages bioconductor).
Date: Mon, 15 Mar 2021 19:08:55 +0100

* gnu/packages/bioinformatics.scm (r-limma): Move from here...
* gnu/packages/bioconductor.scm (r-limma): ...to here.
---
 gnu/packages/bioconductor.scm   | 19 +++++++++++++++++++
 gnu/packages/bioinformatics.scm | 19 -------------------
 2 files changed, 19 insertions(+), 19 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d611f3a491..379b6c30c0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1850,6 +1850,25 @@ Enrichment Analysis} (GSEA).")
 the Human Protein Atlas project.")
     (license license:artistic2.0)))
 
+(define-public r-limma
+  (package
+    (name "r-limma")
+    (version "3.46.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "limma" version))
+              (sha256
+               (base32
+                "1xxv493q1kip9bjfv7v7k5dnq7hz7gvl80i983v4mvwavhgnbxfz"))))
+    (build-system r-build-system)
+    (home-page "http://bioinf.wehi.edu.au/limma")
+    (synopsis "Package for linear models for microarray and RNA-seq data")
+    (description "This package can be used for the analysis of gene expression
+studies, especially the use of linear models for analysing designed experiments
+and the assessment of differential expression.  The analysis methods apply to
+different technologies, including microarrays, RNA-seq, and quantitative PCR.")
+    (license license:gpl2+)))
+
 (define-public r-rbgl
   (package
     (name "r-rbgl")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d9afe2c56f..9774b442a3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,25 +7691,6 @@ including VCF header and contents in RDF and JSON.")
     (home-page "https://github.com/vcflib/bio-vcf")
     (license license:expat)))
 
-(define-public r-limma
-  (package
-    (name "r-limma")
-    (version "3.46.0")
-    (source (origin
-              (method url-fetch)
-              (uri (bioconductor-uri "limma" version))
-              (sha256
-               (base32
-                "1xxv493q1kip9bjfv7v7k5dnq7hz7gvl80i983v4mvwavhgnbxfz"))))
-    (build-system r-build-system)
-    (home-page "http://bioinf.wehi.edu.au/limma")
-    (synopsis "Package for linear models for microarray and RNA-seq data")
-    (description "This package can be used for the analysis of gene expression
-studies, especially the use of linear models for analysing designed experiments
-and the assessment of differential expression.  The analysis methods apply to
-different technologies, including microarrays, RNA-seq, and quantitative PCR.")
-    (license license:gpl2+)))
-
 (define-public r-xvector
   (package
     (name "r-xvector")
-- 
2.30.1

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