GNU bug report logs - #47171
[PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).

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Package: guix-patches;

Reported by: zimoun <zimon.toutoune <at> gmail.com>

Date: Mon, 15 Mar 2021 18:08:02 UTC

Severity: normal

Tags: patch

Done: Ricardo Wurmus <rekado <at> elephly.net>

Bug is archived. No further changes may be made.

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Message #60 received at 47171 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: 47171 <at> debbugs.gnu.org, Leo Famulari <leo <at> famulari.name>
Subject: Re: bug#47171: [PATCH 00/10] Move some Bioconductor packages to (gnu
 packages bioconductor).
Date: Tue, 16 Mar 2021 17:36:04 +0100

On Tue, 16 Mar 2021 at 17:08, Ricardo Wurmus <rekado <at> elephly.net> wrote:

> > Therefore, the fix is to move the CRAN r-bisquerna and r-absfiltergsea
> > packages from (gnu packages cran) to (gnu packages bioconductor)
> > because they depend on the Bioconductor package r-biobase (and
> > r-limma).  Right?
>
> Correct.  We don’t want any CRAN packages to depend on Bioconductor
> things.  When this is unavoidable, though, we move them to (gnu packages
> bioconductor) with a comment.

Ok.


> > How do I proceed?  Submit a patch moving these 2 packages and then
> > another patch reverting the revert?
>
> Sounds good.  (You could do this all in the same issue.)

By the same issue, do you mean the same guix-patches number?  Or the
same commit?


Cheers,
simon
This bug report was last modified 4 years and 111 days ago.

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