GNU bug report logs - #47171
[PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: zimoun <zimon.toutoune <at> gmail.com>
Subject: bug#47171: closed (Re: [bug#47171] [PATCH 00/10] Move some
 Bioconductor packages to (gnu packages bioconductor).)
Date: Mon, 15 Mar 2021 22:34:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#47171: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 47171 <at> debbugs.gnu.org.

-- 
47171: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=47171
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: zimoun <zimon.toutoune <at> gmail.com>
Cc: 47171-done <at> debbugs.gnu.org
Subject: Re: [bug#47171] [PATCH 00/10] Move some Bioconductor packages to
 (gnu packages bioconductor).
Date: Mon, 15 Mar 2021 23:33:11 +0100

Hi,

> zimoun (10):
>   gnu: r-limma: Move to (gnu packages bioconductor).
>   gnu: r-xvector: Move to (gnu packages bioconductor).
>   gnu: r-genomicranges: Move to (gnu packages bioconductor).
>   gnu: r-biobase: Move to (gnu packages bioconductor).
>   gnu: r-annotationdbi: Move to (gnu packages bioconductor).
>   gnu: r-biomart: Move to (gnu packages bioconductor).
>   gnu: r-biocparallel: Move to (gnu packages bioconductor).
>   gnu: r-biostrings: Move to (gnu packages bioconductor).
>   gnu: r-rsamtools: Move to (gnu packages bioconductor).
>   gnu: r-delayedarray: Move to (gnu packages bioconductor).

Thanks, I’ve pushed them all.

-- 
Ricardo

[Message part 3 (message/rfc822, inline)]

From: zimoun <zimon.toutoune <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 00/10] Move some Bioconductor packages to (gnu packages
 bioconductor).
Date: Mon, 15 Mar 2021 19:07:14 +0100

Hi,

Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 4
pacth set like this one are coming...

1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>


To transfer the Copyright, I use:

   git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>

Then, after the move, I run:

   ./pre-inst-env guix build r-<name> --no-grafts
   ./pre-inst-env guix build r-<name> --no-grafts --check

and at the end of the series, I run:

    make as-derivation

to check that "guix pull" is not broken; just in case.

Last, I have not carefully checked the imported modules, so it could
be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
in gnu/packages/bioinformatics.scm.

All the best,
simon

zimoun (10):
  gnu: r-limma: Move to (gnu packages bioconductor).
  gnu: r-xvector: Move to (gnu packages bioconductor).
  gnu: r-genomicranges: Move to (gnu packages bioconductor).
  gnu: r-biobase: Move to (gnu packages bioconductor).
  gnu: r-annotationdbi: Move to (gnu packages bioconductor).
  gnu: r-biomart: Move to (gnu packages bioconductor).
  gnu: r-biocparallel: Move to (gnu packages bioconductor).
  gnu: r-biostrings: Move to (gnu packages bioconductor).
  gnu: r-rsamtools: Move to (gnu packages bioconductor).
  gnu: r-delayedarray: Move to (gnu packages bioconductor).

 gnu/packages/bioconductor.scm   | 305 ++++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 305 --------------------------------
 2 files changed, 305 insertions(+), 305 deletions(-)


base-commit: 266d55dc3080475544bf45e72359c9b9bbcecd53
-- 
2.30.1

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