GNU bug report logs - #47171
[PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).

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From: zimoun <zimon.toutoune <at> gmail.com>
To: 47171 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>, <rekado <at> elephly.net>
Subject: [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
Date: Mon, 15 Mar 2021 19:07:14 +0100

Hi,

Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 4
pacth set like this one are coming...

1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>


To transfer the Copyright, I use:

   git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>

Then, after the move, I run:

   ./pre-inst-env guix build r-<name> --no-grafts
   ./pre-inst-env guix build r-<name> --no-grafts --check

and at the end of the series, I run:

    make as-derivation

to check that "guix pull" is not broken; just in case.

Last, I have not carefully checked the imported modules, so it could
be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
in gnu/packages/bioinformatics.scm.

All the best,
simon

zimoun (10):
  gnu: r-limma: Move to (gnu packages bioconductor).
  gnu: r-xvector: Move to (gnu packages bioconductor).
  gnu: r-genomicranges: Move to (gnu packages bioconductor).
  gnu: r-biobase: Move to (gnu packages bioconductor).
  gnu: r-annotationdbi: Move to (gnu packages bioconductor).
  gnu: r-biomart: Move to (gnu packages bioconductor).
  gnu: r-biocparallel: Move to (gnu packages bioconductor).
  gnu: r-biostrings: Move to (gnu packages bioconductor).
  gnu: r-rsamtools: Move to (gnu packages bioconductor).
  gnu: r-delayedarray: Move to (gnu packages bioconductor).

 gnu/packages/bioconductor.scm   | 305 ++++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 305 --------------------------------
 2 files changed, 305 insertions(+), 305 deletions(-)


base-commit: 266d55dc3080475544bf45e72359c9b9bbcecd53
-- 
2.30.1

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