From unknown Fri Aug 15 15:55:36 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#47070 <47070@debbugs.gnu.org> To: bug#47070 <47070@debbugs.gnu.org> Subject: Status: [PATCH 0/3] Fix 3 bioconductor packages (fail to retrieve upstream) Reply-To: bug#47070 <47070@debbugs.gnu.org> Date: Fri, 15 Aug 2025 22:55:36 +0000 retitle 47070 [PATCH 0/3] Fix 3 bioconductor packages (fail to retrieve ups= tream) reassign 47070 guix-patches submitter 47070 zimoun severity 47070 normal tag 47070 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Thu Mar 11 09:44:43 2021 Received: (at submit) by debbugs.gnu.org; 11 Mar 2021 14:44:43 +0000 Received: from localhost ([127.0.0.1]:52934 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lKMYM-0000pZ-Mr for submit@debbugs.gnu.org; Thu, 11 Mar 2021 09:44:42 -0500 Received: from lists.gnu.org ([209.51.188.17]:56596) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lKMYL-0000pQ-9f for submit@debbugs.gnu.org; Thu, 11 Mar 2021 09:44:41 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:41332) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lKMYK-0000kP-V3 for guix-patches@gnu.org; Thu, 11 Mar 2021 09:44:40 -0500 Received: from mail-wr1-x42d.google.com ([2a00:1450:4864:20::42d]:38341) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lKMYJ-0000L0-3y for guix-patches@gnu.org; Thu, 11 Mar 2021 09:44:40 -0500 Received: by mail-wr1-x42d.google.com with SMTP id d15so2150423wrv.5 for ; Thu, 11 Mar 2021 06:44:37 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=0W+GfxDO371rud1sUPLyhzSe9EM6K4ddBH8eOdZTfU8=; b=SNMd04g2e0ixrlURmbwnkruE/MOSsORNXmJUPLmWGFmpL5jl0T135gAP6lwUvPB4By uuztS6udqbeMkM1LvXq3+RGSIxjjujCC9ZaTWuwOnxiJAGcg3+uGaNHg9EnsLXmD8PKd qyBrpB+YvDjA/heRGTDkA192DeZlpXEVOCatFe5W4+LtetE7z6EssRJyMVV3fzCWjQf+ pkg/S+MVQOLTvjmkbY2u/YZUU55WqjRzv55TPEJQPRLo6or8/HE1xGNpRoODnhMJK6XN tSOSBLZpd4jBIfZyG6AUM/zu91sDw5qmy2rszuVGB1FS874XMVvRh7TjJZQ10b8niTj0 1KCw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=0W+GfxDO371rud1sUPLyhzSe9EM6K4ddBH8eOdZTfU8=; b=W4N3gy86a76bEzMaFvfx4Dcqm2z12RINvGyA59F6vZ2DE7BHStyEV/A4LcRGq7BCfD OmsffgzfRiYVRO7VyZW5xqtxMx2JfvFxZooVcr2E0pgZRILr2efCqcJEe6RSjYbRemPP JYHo7EhnS3xKoonxARNrFvgohcBoCipQX88dO6iCi4LfZTt2scFnYt8H3QF/XRnaI3gi B2othmp+2kgcQVAzXsbIj70tiEt1a+j8ouVDzbVM+eIZ3e/8+IPHu3P0NzmgMQVpd0li 2FwMZhHZV1KrZ35OBrCuIrDvP1fwGwWYm1wSC2nFKGyY7Cx3oj2pNiLY1EDHMU1dUYZR Yv1Q== X-Gm-Message-State: AOAM531TXw86NIXgpYCHj4a0eMWJuNb5EM6ARE+CAfcEQXmw+sU0Ka8l njROO7ZzZ8rEFgkUUKKzgehm44qy9Uk= X-Google-Smtp-Source: ABdhPJxmu9TBY2XibopM71nfrae6hHATQvOkRTTO9KuMOZ1I5Vla7Y9HY0XUhGzV56yLWa7UEDOe2g== X-Received: by 2002:adf:fbce:: with SMTP id d14mr8825302wrs.44.1615473876450; Thu, 11 Mar 2021 06:44:36 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id p10sm4509083wrw.33.2021.03.11.06.44.35 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 11 Mar 2021 06:44:36 -0800 (PST) From: zimoun To: guix-patches@gnu.org Subject: [PATCH 0/3] Fix 3 bioconductor packages (fail to retrieve upstream) Date: Thu, 11 Mar 2021 15:44:22 +0100 Message-Id: <20210311144422.39667-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=2a00:1450:4864:20::42d; envelope-from=zimon.toutoune@gmail.com; helo=mail-wr1-x42d.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: rekado@elephly.net, zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) Hi, This 3 packages had been updated by Bioconductor and the tarballs are not on Berlin, so they fail to build. The patch set updates them to fetch the last upstream versions. Cheers, simon zimoun (3): gnu: r-circrnaprofiler: Update to 1.4.2. gnu: r-chemminer: Update to 3.42.2. gnu: r-bioassayr: Update to 1.28.2. gnu/packages/bioconductor.scm | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) base-commit: 21b3b755151028647081fe96d2992b3743531d71 -- 2.30.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Mar 11 09:47:24 2021 Received: (at 47070) by debbugs.gnu.org; 11 Mar 2021 14:47:24 +0000 Received: from localhost ([127.0.0.1]:52944 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lKMau-0000ur-Ra for submit@debbugs.gnu.org; Thu, 11 Mar 2021 09:47:24 -0500 Received: from mail-wm1-f46.google.com ([209.85.128.46]:36437) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lKMar-0000ud-3r for 47070@debbugs.gnu.org; Thu, 11 Mar 2021 09:47:19 -0500 Received: by mail-wm1-f46.google.com with SMTP id r15-20020a05600c35cfb029010e639ca09eso13368002wmq.1 for <47070@debbugs.gnu.org>; Thu, 11 Mar 2021 06:47:17 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=4x40gSnKHt6WJdQdjoJUCmPzlSqzNM7ouYGPITS60co=; b=Y/Dy4qLUIV+hyC/bBGG+KJBkdQt8A5WpgVvwr5NWzTtfYlUbMyNiXULwqkBcXmNema i6uw6AucURJU9yVFnOnRQx6uNHxufneOVx9TLDNNtcgEXGpLb8YmItoXk+V+mL/vcKog ZXhPVwyBYxljS4b23HXjBokyy+FxQ4CS6K7K3H851g24dvieA6UIHj17KfwbMXHl54OF UZ5mb4NpFVGhsTCP51Sr7jL66CB86c/xHdZ2kHS3p04uQCFq1KbWYHS+HQSDtXdGYTmd drrGJtVIr4qr5J1LqJRe/5t4ZCJPdFGLD8P/8F73qk/tBVO0hrTvw8ewwY4+5yEkuR27 e0KQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=4x40gSnKHt6WJdQdjoJUCmPzlSqzNM7ouYGPITS60co=; b=Jw2s3h6W4l+/3DK5ZASSF/MMysuuGfCLnruICIvlCksDoCKv4wegEVA5AvUSPuIcMx JDuv9KrYVb4c0Pwx7gy6Vzx2/rwkjJPU838IHz7y2s3NCFPUMaOdYMIdky77dX3r8nTf CL7eRgNy9G1RveKsQb4QZFv6oJv+Jt6K4huAQMXcHroRgrmLlClPXCreO6JNOQ8mGFbk 0lay0P75jR3Ohqqwa5IbOT9DFNHw3N/Q6AJY300xo0mfzKBCECWxDsWVIQNmzNRtnT1a o4UT+BVljg2bUFDrp3YvcyzIK9PPbClqZNDmUEeNTf5EqckwxPswfhd9z4zr0Q1AtaJ+ CpBQ== X-Gm-Message-State: AOAM530E07mfZRMEqUvIv215tn1d87BM5D/CNZVse/no+j7rckisbbim UOg40u08PZYh2dV3JcodXKtS6JHa4z8= X-Google-Smtp-Source: ABdhPJw9FT/c/qyACerNwod4KDaA1YGpdwShEV1mG+BeLlY4WrEIM1pWTYcYD6TB4Y/oF3taTR+PwQ== X-Received: by 2002:a7b:c396:: with SMTP id s22mr8503235wmj.38.1615474031209; Thu, 11 Mar 2021 06:47:11 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id i8sm4637921wry.90.2021.03.11.06.47.10 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 11 Mar 2021 06:47:10 -0800 (PST) From: zimoun To: 47070@debbugs.gnu.org Subject: [PATCH 1/3] gnu: r-circrnaprofiler: Update to 1.4.2. Date: Thu, 11 Mar 2021 15:46:59 +0100 Message-Id: <20210311144701.39725-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 47070 Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.4.2. --- gnu/packages/bioconductor.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ee83e00492..17ee5d63d8 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus ;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice -;;; Copyright © 2019, 2020 Simon Tournier +;;; Copyright © 2019, 2020, 2021 Simon Tournier ;;; Copyright © 2020 Peter Lo ;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu ;;; Copyright © 2020 Jakub Kądziołka @@ -7167,14 +7167,14 @@ accessibility data.") (define-public r-circrnaprofiler (package (name "r-circrnaprofiler") - (version "1.4.0") + (version "1.4.2") (source (origin (method url-fetch) (uri (bioconductor-uri "circRNAprofiler" version)) (sha256 (base32 - "1rwpl9a5p5242aiapik0vf4ywqh7m6phzl8z8qmzcy0imbx7mpbn")))) + "0r1hfm3pc7c71irzmxmdwc27ns9hkymz4vhb4pqbli4xn37q7cg8")))) (properties `((upstream-name . "circRNAprofiler"))) (build-system r-build-system) -- 2.30.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Mar 11 09:53:53 2021 Received: (at 47070) by debbugs.gnu.org; 11 Mar 2021 14:53:53 +0000 Received: from localhost ([127.0.0.1]:52971 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lKMhF-00015R-5I for submit@debbugs.gnu.org; Thu, 11 Mar 2021 09:53:53 -0500 Received: from mail-ed1-f43.google.com ([209.85.208.43]:45629) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lKMhC-00015B-I4 for 47070@debbugs.gnu.org; Thu, 11 Mar 2021 09:53:52 -0500 Received: by mail-ed1-f43.google.com with SMTP id bx7so3157157edb.12 for <47070@debbugs.gnu.org>; Thu, 11 Mar 2021 06:53:50 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=aRnGxjfJPB80SXZGQoEV1V0Dai8DgO0sIHrAy2LOtVU=; b=DcZb62iaBNErKbzWW9qY5HUTF2xCTmZNV74azIsQrDPbZxUvUQuXXczvPtugrRBTzS BK/DIp+BzB7dc6Ic1jkj2SSkHDoNqSyg6cPn496bG74dw1LahA3LRYSreTl6xX0TqlIA WXc1w8nRBMUaDaLCPBP0d0LlsP+CfkHalagG2FFMopNdCZV59k1TDvTljK1SKNoVw9jK Aw4O2sYSfVk8wNuhz1f7T5xAIQtBoDkKY7/6qIFTXXua4Vx1eixuqgHe6HCZ56vMOC7t /JG29seY/l10W4gMg3A8mv1zREKpfKt+TeUGScihLh3nG9qeF3hIIQVi7yOKeqSpGR8r Z1Pg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=aRnGxjfJPB80SXZGQoEV1V0Dai8DgO0sIHrAy2LOtVU=; b=ulqbBXQ4uv0+V9oOFYOED1FHatPT9+z69AbCFXq9xZweJbPWQhEdQEXZfA6nChF2z0 VNQ7DImaEsGWaAVOrVm8XPfFhOB6q1f3wwb/6nL1VfcrRPaFHVDM66XNs4dahTgVh7yE hBokQFyfGHkPR6uqmDMsE05AkZgsP5vsonFRiVfyB1kzOONLue7pgeHKSkt8AjqpsZey K40obyFexx5k5k6/Rd8pGbDBSBVO5EGA9gIO79tIuyBeG+uoXU19N1nJViDVDSoiJE9T kDRmSF8NDQI5ZG5Azo1LhXzY0WywSYKCmSE3YsZcqGanKVgvlHpuBoA+GOVliS5/2EE5 VY4Q== X-Gm-Message-State: AOAM531JvRNAbnhoX9Tc3CXOtkdxxVSYMOSkzjzj753CEEY++KfYG5f6 qBHNX+cGpKShPyqT7nnWOGxi50tVUDw= X-Google-Smtp-Source: ABdhPJzaonxijbQqqTI6g2gRb6dA9UEDwKob2S/SFm+0tZ73oa07K5lnbFmlO6PIsZRsc69eEZCwpg== X-Received: by 2002:adf:dc4e:: with SMTP id m14mr9524466wrj.248.1615474031733; Thu, 11 Mar 2021 06:47:11 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id i8sm4637921wry.90.2021.03.11.06.47.11 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 11 Mar 2021 06:47:11 -0800 (PST) From: zimoun To: 47070@debbugs.gnu.org Subject: [PATCH 2/3] gnu: r-chemminer: Update to 3.42.2. Date: Thu, 11 Mar 2021 15:47:00 +0100 Message-Id: <20210311144701.39725-2-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210311144701.39725-1-zimon.toutoune@gmail.com> References: <20210311144701.39725-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 47070 Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.2. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 17ee5d63d8..3a9720adc6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8269,14 +8269,14 @@ visualizing RNA-sequencing datasets and differentially expressed genes.") (define-public r-chemminer (package (name "r-chemminer") - (version "3.42.1") + (version "3.42.2") (source (origin (method url-fetch) (uri (bioconductor-uri "ChemmineR" version)) (sha256 (base32 - "1853w19042c53whdnrfg1v8f07wpswf2si8q4613yrcamzg2zjkx")))) + "10d8h6w24h4s7l02zzv6q46w3yiqsjizip7mf11cvkmd6p7qxfl9")))) (properties `((upstream-name . "ChemmineR"))) (build-system r-build-system) (propagated-inputs -- 2.30.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Mar 11 09:55:02 2021 Received: (at 47070) by debbugs.gnu.org; 11 Mar 2021 14:55:02 +0000 Received: from localhost ([127.0.0.1]:52975 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lKMiL-00017R-HT for submit@debbugs.gnu.org; Thu, 11 Mar 2021 09:55:01 -0500 Received: from mail-wm1-f45.google.com ([209.85.128.45]:54137) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lKMiJ-000170-20 for 47070@debbugs.gnu.org; Thu, 11 Mar 2021 09:55:00 -0500 Received: by mail-wm1-f45.google.com with SMTP id g20so1483164wmk.3 for <47070@debbugs.gnu.org>; Thu, 11 Mar 2021 06:54:58 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=2+ZK3gGqzXM8plH3YSLIvQlXraGxz+vl/raL5NtemII=; b=QTXdrQvKiTt1HQFDFo4AzZWXTzEAajSK98QqdyOuM/wonOTsyOzab/jVrySu55bRC/ EoXrWEd5ePayX8CvOqLZxA3XllQn2689mZ5srfuwJC26uf4Cjtok3d2ZUnwzc/Le9kPj C6R4Bz+yLM5iskY6FqweOuRghRVikiHNGen1CP1BAbN1c5QsMHyN9MA59BYqc/RyZDux L1MOefYYckU0NDWGFjm59QNgiG9NWCiFXnQuq/If6hRWPZI3Vfw+Abxc0SSBtLOnVrNW jzhGJMFF5jgWaqPn4/zsPmdki5kEjF4OJQ4jLWof69Vjjh4AP6YYl0grEdu8c2+95LOo Rw0w== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=2+ZK3gGqzXM8plH3YSLIvQlXraGxz+vl/raL5NtemII=; b=sMFYXRvtPWj7M2WHnc6fAADZPAEnPqSn/Y8kNkQHKVKVr37HnAYn1oPfmmcZPQZ6ht OG2Qqot+cZ3AoS6yPfLn8z+Hkf4CZKmcLwHbhaDvG8uf11mrr3oK6JAVugPzAc8uEw5g YDrzFBEImkS/a6bSsXwmByKPQyza000a7X7ZpQ/BzEfNi1nTuBiyCuBR40cGOh++WPV5 kPnT5VbJIyfP7+tE9qGToccWu1hv8R2Qdjnh1hrRfy5XikemFGSzfUVMed61Rf1KszoP ZIqAowDVEX1liA5lQ906RISmStUSImiJ84krndiFlYOVgSu1+UeFJDoSp8UucEiKufqs 4kUQ== X-Gm-Message-State: AOAM532jBmYbMy0H5RnlodXuwK8RRxXxFt7FIs0wQcxtYUHzM3V2uQ7t uf2BHRsXNtXfwNo2hVE6bU94sbS0g4o= X-Google-Smtp-Source: ABdhPJzy2N9pzKzSzAbAoi7HzXKNjiQm4KcKsunlUqCztmFPEDiCpAPFJKBF9E9kDRugd9ySDffasg== X-Received: by 2002:a1c:5f89:: with SMTP id t131mr8301633wmb.173.1615474032214; Thu, 11 Mar 2021 06:47:12 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id i8sm4637921wry.90.2021.03.11.06.47.11 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 11 Mar 2021 06:47:11 -0800 (PST) From: zimoun To: 47070@debbugs.gnu.org Subject: [PATCH 3/3] gnu: r-bioassayr: Update to 1.28.2. Date: Thu, 11 Mar 2021 15:47:01 +0100 Message-Id: <20210311144701.39725-3-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210311144701.39725-1-zimon.toutoune@gmail.com> References: <20210311144701.39725-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 47070 Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.2. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3a9720adc6..6301f2f7c4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8310,14 +8310,14 @@ structures.") (define-public r-bioassayr (package (name "r-bioassayr") - (version "1.28.0") + (version "1.28.2") (source (origin (method url-fetch) (uri (bioconductor-uri "bioassayR" version)) (sha256 (base32 - "0vxnd8wnhjdfqh47nc6y1ffiy5r9a6n3g2hyk1r9bv6vhrd0ns3f")))) + "0ylnnm31jkmi8zz78kngqv36yn6i5lvjp1i27v59svw13m4r03g5")))) (properties `((upstream-name . "bioassayR"))) (build-system r-build-system) (propagated-inputs -- 2.30.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 12 08:42:20 2021 Received: (at 47070-done) by debbugs.gnu.org; 12 Mar 2021 13:42:20 +0000 Received: from localhost ([127.0.0.1]:56288 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lKi3U-0007xz-DK for submit@debbugs.gnu.org; Fri, 12 Mar 2021 08:42:20 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21182) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lKi3S-0007xq-Ck for 47070-done@debbugs.gnu.org; Fri, 12 Mar 2021 08:42:15 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1615556532; cv=none; d=zohomail.com; s=zohoarc; b=KT5Rx4b/VY8Juw5IK3px4fHSxY5xaT8Y9RZ4XArtVlSlhpNO+Dbr4jFJ6kr+qHQzPgC9KYTTU143ThqzTlfIHDQfDAiUTP8DD8hxbDCAea7Ecm33fIS137bF6FQqL6qkYMRX/qf8YiLuvnUPXGUuyvX44hjb5yaq4ln4kF9gaSE= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1615556532; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:MIME-Version:Message-ID:Subject:To; bh=YpE/WScQbUmcnNjt79h8KMnqAgpIniPnJRABDvbZmMA=; b=Wkl/4CBJ1eegEusKL11EJgeCoXfDtwbN2o8BJj8HhAcN+k+ROdRwhH6CBp6FySw/owafcC6LsnhVgYaqSRVWA9pTTIhDeCU/KqCeqgi/BuHtiPoYvarz4OiiHUJ8Ez0/OCpLIDqbd0Ki7PIEiFrnNwNLbsD6BGxdC6xYgG9zpAY= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1615556532; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:To:Cc:Subject:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=YpE/WScQbUmcnNjt79h8KMnqAgpIniPnJRABDvbZmMA=; b=Ak/p+7Jg7rgUtYygTbdyZbyAvCc8Flk3iy5Oj8fw6xoMZtm7B+ZMx6S+H63E+c98 eamGBw+ZvpX2lUAPpf2E5QhbdIGW3CRFzbFmTY7QF8vh36B73YtG1yok1xzkQNPY7z9 WylPjcgz2yZwK47wltAaojThcu0bjdRJrQH3Ebeo= Received: from localhost (p54ad4e64.dip0.t-ipconnect.de [84.173.78.100]) by mx.zohomail.com with SMTPS id 1615556529058398.08191718820785; Fri, 12 Mar 2021 05:42:09 -0800 (PST) User-agent: mu4e 1.4.14; emacs 27.1 From: Ricardo Wurmus To: 47070-done@debbugs.gnu.org Subject: [PATCH 0/3] Fix 3 bioconductor packages (fail to retrieve upstream) X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Fri, 12 Mar 2021 14:42:05 +0100 Message-ID: <87wnuco5ea.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 47070-done Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thank you, I pushed these to the =E2=80=9Cmaster=E2=80=9D branch. --=20 Ricardo From unknown Fri Aug 15 15:55:36 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 10 Apr 2021 11:24:08 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator