Package: guix-patches;
Reported by: Felix Gruber <felgru <at> posteo.net>
Date: Thu, 4 Mar 2021 19:55:02 UTC
Severity: normal
Tags: patch
Done: Ludovic Courtès <ludovic.courtes <at> inria.fr>
Bug is archived. No further changes may be made.
View this message in rfc822 format
From: Felix Gruber <felgru <at> posteo.net> To: 46929 <at> debbugs.gnu.org Cc: Felix Gruber <felgru <at> posteo.net> Subject: [bug#46929] [PATCH] gnu: maths: dune-*: Update to version 2.7.1 Date: Thu, 4 Mar 2021 20:53:54 +0100
* gnu/packages/maths.scm (dune-alugrid, dune-common, dune-functions,
dune-geometry, dune-grid, dune-istl, dune-localfunctions, dune-pdelab,
dune-subgrid, dune-typetree, dune-uggrid): Update to version 2.7.1.
(dune-istl)[source](patches) Remove patch that is no longer needed.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove above patch.
---
gnu/local.mk | 1 -
gnu/packages/maths.scm | 53 ++++++------
.../dune-istl-2.7-fix-non-mpi-tests.patch | 82 -------------------
3 files changed, 26 insertions(+), 110 deletions(-)
delete mode 100644 gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch
diff --git a/gnu/local.mk b/gnu/local.mk
index 3557d9f429..c3c838ea67 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -941,7 +941,6 @@ dist_patch_DATA = \
%D%/packages/patches/doxygen-1.8.17-runtests.patch \
%D%/packages/patches/dstat-fix-crash-when-specifying-delay.patch \
%D%/packages/patches/dstat-skip-devices-without-io.patch \
- %D%/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch \
%D%/packages/patches/dvd+rw-tools-add-include.patch \
%D%/packages/patches/ecl-16-format-directive-limit.patch \
%D%/packages/patches/ecl-16-ignore-stderr-write-error.patch \
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 6856737bdf..c249b80ee8 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -34,7 +34,7 @@
;;; Copyright © 2019 Steve Sprang <scs <at> stevesprang.com>
;;; Copyright © 2019 Robert Smith <robertsmith <at> posteo.net>
;;; Copyright © 2020 Jakub Kądziołka <kuba <at> kadziolka.net>
-;;; Copyright © 2020 Felix Gruber <felgru <at> posteo.net>
+;;; Copyright © 2020, 2021 Felix Gruber <felgru <at> posteo.net>
;;; Copyright © 2020 R Veera Kumar <vkor <at> vkten.in>
;;; Copyright © 2020 Vincent Legoll <vincent.legoll <at> gmail.com>
;;; Copyright © 2020 Nicolò Balzarotti <nicolo <at> nixo.xyz>
@@ -5186,7 +5186,7 @@ linear algebra primitives specifically targeting graph analytics.")
(define-public dune-common
(package
(name "dune-common")
- (version "2.7.0")
+ (version "2.7.1")
(source
(origin
(method url-fetch)
@@ -5194,7 +5194,7 @@ linear algebra primitives specifically targeting graph analytics.")
version "/dune-common-" version ".tar.gz"))
(sha256
(base32
- "140q1zh44cr5yrjwg4b5ga803rkqv55vk30l2cqm29aklj1wb0rw"))))
+ "0sidwdkyrrqjkqhpvrlc991pzi5xzlvxk91s2n7qk3widwy7fch2"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -5224,7 +5224,7 @@ Differences} (FD).")
(define-public dune-geometry
(package
(name "dune-geometry")
- (version "2.7.0")
+ (version "2.7.1")
(source
(origin
(method url-fetch)
@@ -5232,7 +5232,7 @@ Differences} (FD).")
version "/dune-geometry-" version ".tar.gz"))
(sha256
(base32
- "1cicvlwbyyw76npicnblxckyvhbfn3ip8isydiv3hlrlz8zcg5nr"))))
+ "068mh3fd110xl27rwxqlqy4d9cpqw2vqm2pzfrripiaqscb3byfy"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -5264,7 +5264,7 @@ This package contains the basic DUNE geometry classes.")
(define-public dune-uggrid
(package
(name "dune-uggrid")
- (version "2.7.0")
+ (version "2.7.1")
(source
(origin
(method git-fetch)
@@ -5274,7 +5274,7 @@ This package contains the basic DUNE geometry classes.")
(file-name (git-file-name name version))
(sha256
(base32
- "192miqgmfj6jwk969gydzpbv9ki7jg5nky3ydnrwa2nq29b5xkh0"))))
+ "11qz52g9d5k96fqik2lyi80xryw174rnny074pj70ardl6zzz83p"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -5301,7 +5301,7 @@ This package contains the DUNE UG grid classes.")
(define-public dune-grid
(package
(name "dune-grid")
- (version "2.7.0")
+ (version "2.7.1")
(source
(origin
(method url-fetch)
@@ -5309,7 +5309,7 @@ This package contains the DUNE UG grid classes.")
version "/dune-grid-" version ".tar.gz"))
(sha256
(base32
- "17fjz30qazjgl11sryyxnw9klai4yz1ji4bs68013xcxc5hdv27s"))))
+ "15iws03hkbmr4a4rqqb0rriz1m8szl96wdr7gw0jmrcnlzbdbbx5"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -5344,7 +5344,7 @@ This package contains the basic DUNE grid classes.")
(define-public dune-istl
(package
(name "dune-istl")
- (version "2.7.0")
+ (version "2.7.1")
(source
(origin
(method url-fetch)
@@ -5352,8 +5352,7 @@ This package contains the basic DUNE grid classes.")
version "/dune-istl-" version ".tar.gz"))
(sha256
(base32
- "0gl3wgz5rs6sb4m83440ny45sbx7z7lnbi3gx6r9nm3rvy5j33f9"))
- (patches (search-patches "dune-istl-2.7-fix-non-mpi-tests.patch"))))
+ "1cy69s1266hvnh8blznlvvkrf8i2g640rc3mf7kp872wgvdz4nb9"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -5403,7 +5402,7 @@ aggregation-based algebraic multigrid.")
(define-public dune-localfunctions
(package
(name "dune-localfunctions")
- (version "2.7.0")
+ (version "2.7.1")
(source
(origin
(method url-fetch)
@@ -5411,7 +5410,7 @@ aggregation-based algebraic multigrid.")
version "/dune-localfunctions-" version ".tar.gz"))
(sha256
(base32
- "1yih59h6vngii696bx1c2vil02lriij4kz0nc583mjn9kiaqxfqd"))))
+ "031i42anrhi0ngpvp42rdjbkic7v3008fwild9xg7flffwvnpshg"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -5458,17 +5457,17 @@ assemble global function spaces on finite-element grids.")
(define-public dune-alugrid
(package
(name "dune-alugrid")
- (version "2.7.0-git-81d35682")
+ (version "2.7.1-git-178a69b6")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://gitlab.dune-project.org/extensions/dune-alugrid.git")
- (commit "81d356827c84454b971937db02c02b90bbcd7fe5")))
+ (commit "178a69b69eca8bf3e31ddce0fd8c990fee4931ae")))
(file-name (git-file-name name version))
(sha256
(base32
- "0z54lwfp53prcrs94k8gwh047l9z642jll3l56xlyfr69z0b2zz1"))))
+ "1fbjc5ydcax8qacrq4a703ln6xfcfz500lvy628jrm8hg6zqd61g"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -5508,17 +5507,17 @@ cubes.")
(define-public dune-subgrid
(package
(name "dune-subgrid")
- (version "2.7.0-git-2103a363")
+ (version "2.7.1-git-45d1ee9f")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://git.imp.fu-berlin.de/agnumpde/dune-subgrid")
- (commit "2103a363f32e8d7b60e66eee7ddecf969f6cf762")))
+ (commit "45d1ee9f3f711e209695deee97912f4954f7f280")))
(file-name (git-file-name name version))
(sha256
(base32
- "1wsjlypd3835c3arqjkw836cxx5q67zy447wa65q634lf6f6v9ia"))))
+ "0xjf7865wil7kzym608kv3nc3ff3m3nlqich4k9wjyvy3lz6panh"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -5548,7 +5547,7 @@ provides the full grid interface including adaptive mesh refinement.")
(define-public dune-typetree
(package
(name "dune-typetree")
- (version "2.7.0")
+ (version "2.7.1")
(source
(origin
(method git-fetch)
@@ -5558,7 +5557,7 @@ provides the full grid interface including adaptive mesh refinement.")
(file-name (git-file-name name version))
(sha256
(base32
- "1rhv25yg0q1hw50c8wlfqhgwrjl4mh62zq9v14ilwgzbfgxmpiy7"))))
+ "1kx9k8i7pdw6l6ny6nq85v5p1nd6yxldzaj8k3nizaz3q1j407pv"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -5587,7 +5586,7 @@ operating on statically typed trees of objects.")
(define-public dune-functions
(package
(name "dune-functions")
- (version "2.7.0")
+ (version "2.7.1")
(source
(origin
(method git-fetch)
@@ -5597,7 +5596,7 @@ operating on statically typed trees of objects.")
(file-name (git-file-name name version))
(sha256
(base32
- "1na4gcih0kin37ksj2xj07ds04v7zx53pjdhm1hzy55jjfqdjk8h"))))
+ "04dhr4asnl38bf1gp8hrk31maav33m7q71lhl2n5yk1q1x6i77nw"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -5637,17 +5636,17 @@ implemented as callable objects, and bases of finite element spaces.")
(define-public dune-pdelab
(package
(name "dune-pdelab")
- (version "2.7.0-git-476fe437")
+ (version "2.7.1-git-3435f7f1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://gitlab.dune-project.org/pdelab/dune-pdelab")
- (commit "476fe43763fa6f459c5e4658e2a2b4b5582db834")))
+ (commit "3435f7f1f4d05e3f6e8d9fe8a06a09569c7244be")))
(file-name (git-file-name name version))
(sha256
(base32
- "0cs36piqzn6rq0j2ih3ab3q3q9yg199wk72k5qi86pkzh7i7fdn1"))))
+ "0akllyj4qh686h1xs53n102vf70ydxa7g6ha5gj3wdlig2ny4vik"))))
(build-system cmake-build-system)
(arguments '(#:tests? #f)) ; XXX: the tests cannot be compiled
(inputs
diff --git a/gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch b/gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch
deleted file mode 100644
index ee2bb8f676..0000000000
--- a/gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch
+++ /dev/null
@@ -1,82 +0,0 @@
-Fix build of dune-istl's tests
-
-Patch copied from upstream source repository:
-
-https://gitlab.dune-project.org/core/dune-istl/-/commit/9eee3462df5a64881c08574f9291e76db398de0a
-
-From 9eee3462df5a64881c08574f9291e76db398de0a Mon Sep 17 00:00:00 2001
-From: Felix Gruber <felgru <at> posteo.net>
-Date: Sat, 4 Apr 2020 15:27:09 +0200
-Subject: [PATCH] make tests succeed when MPI is disabled
-
-When MPI is not available or explicitly disabled with the CMake build
-option -DCMAKE_IDSABLE_FIND_PACKAGE_MPI=TRUE, some tests were unable to
-build.
-
-The tests created from solverfactorytest.cc.in and part of
-scalarproductstest.cc use Dune::OwnerOverlapCopyCommunication which is
-defined behind `#if HAVE_MPI` and is thus not available in a non-MPI
-build. I've thus disabled those tests when MPI is unavailable.
-
-The matrixmarkettest did not work without MPI, as it contained some code
-using the wrong template parameters when HAVE_MPI was not set. Those
-template paramters have been fixed now.
-
-I've confirmed, that after my changes `make build_tests` succeeds to
-build all tests and that those tests run without failure.
----
- dune/istl/test/CMakeLists.txt | 3 ++-
- dune/istl/test/matrixmarkettest.cc | 2 +-
- dune/istl/test/scalarproductstest.cc | 2 ++
- 3 files changed, 5 insertions(+), 2 deletions(-)
-
-diff --git a/dune/istl/test/CMakeLists.txt b/dune/istl/test/CMakeLists.txt
-index ffd87969..2c7b2387 100644
---- a/dune/istl/test/CMakeLists.txt
-+++ b/dune/istl/test/CMakeLists.txt
-@@ -77,7 +77,8 @@ set(DUNE_TEST_FACTORY_BLOCK_SIZES
- function(add_factory_test BLOCK)
- STRING(REGEX REPLACE "[^a-zA-Z0-9]" "" BLOCK_CLEAN ${BLOCK})
- configure_file(solverfactorytest.cc.in solverfactorytest_${BLOCK_CLEAN}.cc)
-- dune_add_test(SOURCES ${CMAKE_CURRENT_BINARY_DIR}/solverfactorytest_${BLOCK_CLEAN}.cc)
-+ dune_add_test(SOURCES ${CMAKE_CURRENT_BINARY_DIR}/solverfactorytest_${BLOCK_CLEAN}.cc
-+ CMAKE_GUARD HAVE_MPI)
- endfunction(add_factory_test)
-
- foreach(FIELD_TYPE ${DUNE_TEST_FACTORY_FIELD_TYPES})
-diff --git a/dune/istl/test/matrixmarkettest.cc b/dune/istl/test/matrixmarkettest.cc
-index b335afe6..ce30e8ae 100644
---- a/dune/istl/test/matrixmarkettest.cc
-+++ b/dune/istl/test/matrixmarkettest.cc
-@@ -52,7 +52,7 @@ int testMatrixMarket(int N)
- storeMatrixMarket(mat, std::string("testmat"), comm);
- storeMatrixMarket(bv, std::string("testvec"), comm, false);
- #else
-- typedef Dune::MatrixAdapter<BCRSMat,BVector,BVector> Operator;
-+ typedef Dune::MatrixAdapter<Matrix,Vector,Vector> Operator;
- Operator op(mat);
- op.apply(bv, cv);
-
-diff --git a/dune/istl/test/scalarproductstest.cc b/dune/istl/test/scalarproductstest.cc
-index 452b1d89..f46ce2a9 100644
---- a/dune/istl/test/scalarproductstest.cc
-+++ b/dune/istl/test/scalarproductstest.cc
-@@ -115,6 +115,7 @@ int main(int argc, char** argv)
- scalarProductTest<ScalarProduct, Vector>(scalarProduct,numBlocks);
- }
-
-+#if HAVE_MPI
- // Test the ParallelScalarProduct class
- {
- using Vector = BlockVector<FieldVector<double,BlockSize> >;
-@@ -139,6 +140,7 @@ int main(int argc, char** argv)
- ScalarProduct scalarProduct(communicator,SolverCategory::nonoverlapping);
- scalarProductTest<ScalarProduct, Vector>(scalarProduct,numBlocks);
- }
-+#endif
-
- return t.exit();
- }
---
-2.25.1
-
--
2.30.1
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997,2003 nCipher Corporation Ltd,
1994-97 Ian Jackson.