GNU bug report logs - #46869
[PATCH] gnu: hmmer: Update to 3.3.2.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Efraim Flashner <efraim <at> flashner.co.il>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#46869: closed ([PATCH] gnu: hmmer: Update to 3.3.2.)
Date: Wed, 03 Mar 2021 08:15:01 +0000

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Your message dated Wed, 3 Mar 2021 10:12:26 +0200
with message-id <YD9E6qc7BifuMVTr <at> 3900XT>
and subject line Re: [bug#46869] [PATCH] gnu: hmmer: Update to 3.3.2.
has caused the debbugs.gnu.org bug report #46869,
regarding [PATCH] gnu: hmmer: Update to 3.3.2.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
46869: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=46869
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Contact help-debbugs <at> gnu.org with problems

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From: Tim Howes <timhowes <at> lavabit.com>
To: guix-patches <at> gnu.org
Subject: [PATCH] gnu: hmmer: Update to 3.3.2.
Date: Mon,  1 Mar 2021 21:44:40 -0800

* gnu/packages/bioinformatics.scm (hmmer): Update to 3.3.2.
---
 gnu/packages/bioinformatics.scm | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 42476a4b2f..48dfe0287e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -19,6 +19,7 @@
 ;;; Copyright © 2020 Jakub Kądziołka <kuba <at> kadziolka.net>
 ;;; Copyright © 2020 Pierre Langlois <pierre.langlois <at> gmx.com>
 ;;; Copyright © 2020 Bonface Munyoki Kilyungi <bonfacemunyoki <at> gmail.com>
+;;; Copyright © 2021 Tim Howes <timhowes <at> lavabit.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -3874,7 +3875,7 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).")
 (define-public hmmer
   (package
     (name "hmmer")
-    (version "3.2.1")
+    (version "3.3.2")
     (source
      (origin
        (method url-fetch)
@@ -3882,9 +3883,10 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).")
              "http://eddylab.org/software/hmmer/hmmer-" version ".tar.gz"))
        (sha256
         (base32
-         "171bivy6xhgjsz5nv53n81pc3frnwz29ylblawk2bv46szwjjqd5"))))
+         "0s9wf6n0qanbx8qs6igfl3vyjikwbrvh4d9d6mv54yp3xysykzlj"))))
     (build-system gnu-build-system)
-    (native-inputs `(("perl" ,perl)))
+    (native-inputs `(("perl" ,perl)
+                     ("python" ,python))) ; for tests
     (home-page "http://hmmer.org/")
     (synopsis "Biosequence analysis using profile hidden Markov models")
     (description
-- 
2.30.1

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From: Efraim Flashner <efraim <at> flashner.co.il>
To: Tim Howes <timhowes <at> lavabit.com>
Cc: 46869-done <at> debbugs.gnu.org
Subject: Re: [bug#46869] [PATCH] gnu: hmmer: Update to 3.3.2.
Date: Wed, 3 Mar 2021 10:12:26 +0200

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Thanks! Patch pushed.

-- 
Efraim Flashner   <efraim <at> flashner.co.il>   אפרים פלשנר
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