From debbugs-submit-bounces@debbugs.gnu.org Thu Feb 11 16:04:04 2021 Received: (at submit) by debbugs.gnu.org; 11 Feb 2021 21:04:04 +0000 Received: from localhost ([127.0.0.1]:59425 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lAJ88-0006Kv-I3 for submit@debbugs.gnu.org; Thu, 11 Feb 2021 16:04:04 -0500 Received: from lists.gnu.org ([209.51.188.17]:41176) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lAJ84-0006KM-RD for submit@debbugs.gnu.org; Thu, 11 Feb 2021 16:04:03 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:46786) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lAJ84-0001A5-La for guix-patches@gnu.org; Thu, 11 Feb 2021 16:04:00 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:51891) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lAJ81-00017I-Jn for guix-patches@gnu.org; Thu, 11 Feb 2021 16:03:59 -0500 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 9A551A00FD; Thu, 11 Feb 2021 22:03:39 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1613077419; x=1614891820; bh=3XboPmeCsqr6bS7CBL5SRdg5sJRXlRWL4qBAj4cDYkM=; b=JwBJHsXGuudc tXRavenq+f8U1mn5ixR5RR5nyjaXRnBrthhRmsGUWtJAVH9qZeLWcbXeAE0jBiqz fos03AtlQRyKeoJouYDxCtvV0zkl9hKsMAT/L9ogrBk//ibMZ9MwrFcqzWu1+qf7 0XE55CxsEtehi54C9p1QurDv1AdttB4= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id wKwPKWWgKUWM; Thu, 11 Feb 2021 22:03:39 +0100 (CET) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS; Thu, 11 Feb 2021 22:03:39 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2176.2; Thu, 11 Feb 2021 22:03:38 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: bowtie1: Update to 1.3.0. Date: Thu, 11 Feb 2021 22:03:29 +0100 Message-ID: <20210211210329.20176-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.30.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3080-8.6.1012-25968.002 X-TM-AS-Result: No-10--1.032400-8.000000 X-TMASE-MatchedRID: z/64wGSHLXS6/eEqqZaZmj8Ckw9b/GFeTJDl9FKHbrl41FO+hFFhMQbo TDS3zulAkzpHopPQfRr9E3D6X+2jHW2x/ChgpGE+TsJqNJWg0Wwv1a8dwx1BPs/6ZO9skb6UlzW oKSihkxPfttP4+j/Uj++ctL26ncb6j6hiSHavoCUHwXE78FAewm7/cF+aeNZMU72YOAMDJjieAi CmPx4NwBnUJ0Ek6yhjxEHRux+uk8jfhP1xgyx3DEp0vq8JloF7CCNWi/v0MYVWjRZXqHFuvzou9 YL6/RB6bmBTEMfI7HO4XcKyIW/JL3au9KaW2VlHq/hVSnmbeC/+YwBq1N4+z2uLCTjzz6qi2qQa z8sERlrwQVgIdVG4FE5aD4ZIh+0xjhMO3DAp+0s= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.032400-8.000000 X-TMASE-Version: SMEX-14.0.0.3080-8.6.1012-25968.002 X-TM-SNTS-SMTP: 382CFEAFCB26D668961943EB3DD46BFD516BF926D97D93B703357444280DB0392000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H4=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: rekado@elephly.net, =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0. --- gnu/packages/bioinformatics.scm | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cbf08c5dd2..ab149d6aad 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1654,14 +1654,14 @@ gapped, local, and paired-end alignment modes.") (define-public bowtie1 (package (name "bowtie1") - (version "1.2.3") + (version "1.3.0") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/" - version "/bowtie-src-x86_64.zip")) + version "/bowtie-" version "-src.zip")) (sha256 (base32 - "0vmiqdhc9dzyfy9sh6vgi7k9xy2hiw8g87vbamnc6cgpm179zsa4")) + "11dbihdnrizc6qhx9xsw77w3q5ssx642alaqzvhxx32ak9glvq04")) (modules '((guix build utils))) (snippet '(substitute* "Makefile" @@ -1672,7 +1672,7 @@ gapped, local, and paired-end alignment modes.") (arguments '(#:tests? #f ; no "check" target #:make-flags - (list "all" + (list "CC=gcc" "all" (string-append "prefix=" (assoc-ref %outputs "out"))) #:phases (modify-phases %standard-phases -- 2.30.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Feb 11 16:39:46 2021 Received: (at 46448-done) by debbugs.gnu.org; 11 Feb 2021 21:39:46 +0000 Received: from localhost ([127.0.0.1]:59462 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lAJgf-0007J6-Sa for submit@debbugs.gnu.org; Thu, 11 Feb 2021 16:39:46 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21148) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lAJgb-0007Iv-SJ for 46448-done@debbugs.gnu.org; Thu, 11 Feb 2021 16:39:44 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1613079579; cv=none; d=zohomail.com; s=zohoarc; b=Gmdm5BG8owD4oX/k1T9XyPA690iqugpznKMaYELlv2xiUjjNs2N9gJEXomudeUkWo0uhkGNL/fk/zBNdYoV8VXL3nif7lbTGr3DPlIj15VTiOrNH925dfRhd9ZcpgwmJeYrWvCEBU97S6fDcnB/jpZbXkmqD/T/TfivAkJvYGKI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1613079579; h=Content-Type:Content-Transfer-Encoding:Date:From:MIME-Version:Message-ID:References:Subject:To; bh=XaLLAReZCopl1tYRYvCYhIagNGFF5vjWQAhIRAtSjn8=; b=Ieqe93MTvHDpnDf1Y0OEKVw+qdTGJfxy3RWT+7FCuaPO1dY5yJuTprjWfmo3dtlHtmPNnD1RAcfD6fs4SjpV2NSINmCEXAVJrQTJnCr3DxfodlPgCrHwkUMa4bujnNrDtrJiDMM2hPttbfNs5Yqr+WrxBcoz2dMtTtIqRZy0ItI= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1613079579; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Subject:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=XaLLAReZCopl1tYRYvCYhIagNGFF5vjWQAhIRAtSjn8=; b=MfixDiQce/z6ABdfRs775WBEOkvLsW+51u3uy1cxtxUjkQ7JBmIZX6csXllxs2Ta HY2Kqy0BdAJeVVoK+J7yrqnOY7wYVcrnssjHZhK2sozdwfulkeWVhf7+GxKacQ0uFfu +5GLGk/XePEWFKEB8q24Z9KIJ9JIMiAIuSUwwjXE= Received: from localhost (p54ad4ab3.dip0.t-ipconnect.de [84.173.74.179]) by mx.zohomail.com with SMTPS id 1613079575975986.985765752849; Thu, 11 Feb 2021 13:39:35 -0800 (PST) References: <20210211210329.20176-1-madalinionel.patrascu@mdc-berlin.de> <87v9ayp9zj.fsf@elephly.net> User-agent: mu4e 1.4.14; emacs 27.1 From: Ricardo Wurmus To: 46448-done@debbugs.gnu.org Subject: Fwd: Re: [PATCH] gnu: bowtie1: Update to 1.3.0. X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Thu, 11 Feb 2021 22:39:33 +0100 Message-ID: <87sg62p9m2.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 46448-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Ricardo Wurmus writes: > M=C4=83d=C4=83lin Ionel Patra=C8=99cu writes: > >> * gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0. > > Pushed with commit 160e4a95e7 with a slightly changed commit message to > mention the change to the =E2=80=9Carguments=E2=80=9D field. > > Thanks! --=20 Ricardo From unknown Tue Jun 17 01:29:12 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 12 Mar 2021 12:24:06 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator