From unknown Sun Jun 22 00:27:28 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#45869] [PATCH] gnu: mafft: Update to 7.475. 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Thu, 14 Jan 2021 19:34:59 +0100 (CET) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Thu, 14 Jan 2021 19:34:59 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2106.2; Thu, 14 Jan 2021 19:34:58 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Thu, 14 Jan 2021 19:34:15 +0100 Message-ID: <20210114183415.11844-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.30.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3080-8.6.1012-25912.002 X-TM-AS-Result: No-10--3.147100-8.000000 X-TMASE-MatchedRID: KJIp1PuCboC6/eEqqZaZmj8Ckw9b/GFeTJDl9FKHbrmAI7Mvq/sL53sm Ebb/mVvOC6+Zjvylmgt6n3hIvN5dLffPo4nyNKG1weku330t3muikZBjlts/cm8ivTjuIMaBUAr JnwHoG3R25U0AxYNtt7VijUdnqQBWj2hRzH1UwuAURSScn+QSXt0H8LFZNFG76sBnwpOylLNiHL XsE89bWMTJLzKM98xfSq6rQyyDtMcNh/RDngFdYURMASxEz8090aRDDTNILiGkT/dVBrRTPDmiy sF2kf4E4QMe98EdjT/ox9rqorLqIj47jot1RqlnCuhB+Hs2Q+XFRuRzIFoKqH7cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.147100-8.000000 X-TMASE-Version: SMEX-14.0.0.3080-8.6.1012-25912.002 X-TM-SNTS-SMTP: 8E265212CEBE47BF17AACAEC24B2EB26BFD3523718AB6345A0F9D8AE10B1BADD2000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (mafft): Update to 7.475. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 512abcd8fd..62882e672c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4687,7 +4687,7 @@ sequencing tag position and orientation.") (define-public mafft (package (name "mafft") - (version "7.471") + (version "7.475") (source (origin (method url-fetch) (uri (string-append @@ -4696,7 +4696,7 @@ sequencing tag position and orientation.") (file-name (string-append name "-" version ".tgz")) (sha256 (base32 - "0r1973fx2scq4712zdqfy67wkzqj0c0bhrdy4jxhvq40mdxyry30")))) + "0i2i2m3blh2xkbkdk48hxfssks30ny0v381gdl7zwhcvp0axs26r")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; no automated tests, though there are tests in the read me -- 2.30.0 From unknown Sun Jun 22 00:27:28 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Subject: bug#45869: closed (Re: [bug#45869] [PATCH] gnu: mafft: Update to 7.475.) Message-ID: References: <20210114183415.11844-1-madalinionel.patrascu@mdc-berlin.de> X-Gnu-PR-Message: they-closed 45869 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 45869@debbugs.gnu.org Date: Mon, 18 Jan 2021 10:19:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1610965142-20602-1" This is a multi-part message in MIME format... ------------=_1610965142-20602-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #45869: [PATCH] gnu: mafft: Update to 7.475. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 45869@debbugs.gnu.org. --=20 45869: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D45869 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1610965142-20602-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 45869-done) by debbugs.gnu.org; 18 Jan 2021 10:18:36 +0000 Received: from localhost ([127.0.0.1]:46430 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1l1RcJ-0005Le-Vi for submit@debbugs.gnu.org; Mon, 18 Jan 2021 05:18:36 -0500 Received: from flashner.co.il ([178.62.234.194]:58558) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1l1RcI-0005LR-5C for 45869-done@debbugs.gnu.org; Mon, 18 Jan 2021 05:18:34 -0500 Received: from localhost (unknown [31.210.181.184]) by flashner.co.il (Postfix) with ESMTPSA id 51505402D2; Mon, 18 Jan 2021 10:18:28 +0000 (UTC) Date: Mon, 18 Jan 2021 12:17:25 +0200 From: Efraim Flashner To: =?utf-8?B?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= Subject: Re: [bug#45869] [PATCH] gnu: mafft: Update to 7.475. Message-ID: References: <20210114183415.11844-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha512; protocol="application/pgp-signature"; boundary="FDheETaGpG7IMn6A" Content-Disposition: inline In-Reply-To: <20210114183415.11844-1-madalinionel.patrascu@mdc-berlin.de> X-PGP-Key-ID: 0x41AAE7DCCA3D8351 X-PGP-Key: https://flashner.co.il/~efraim/efraim_flashner.asc X-PGP-Fingerprint: A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 45869-done Cc: 45869-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --FDheETaGpG7IMn6A Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable looks good. patch pushed! --=20 Efraim Flashner =D7=90=D7=A4=D7=A8=D7=99=D7=9D = =D7=A4=D7=9C=D7=A9=D7=A0=D7=A8 GPG key =3D A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 Confidentiality cannot be guaranteed on emails sent or received unencrypted --FDheETaGpG7IMn6A Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAABCgAdFiEEoov0DD5VE3JmLRT3Qarn3Mo9g1EFAmAFYDQACgkQQarn3Mo9 g1EPsA//VGWQvx82XEYXSscc9lIM5iRDQOXtnKINmhIqh6LJTMRzqczuFByZemlh nQBM5TP5SOFWutSVdQrC/1n71zsqW0sN0dGhxI8f7itJXVsFPXtq/xvNTrqwmZg8 4ghsSChSzduV2fpvkSFDj2bJi4zr6WKiuYMxBoZd8mKGmlYpzkiZP2hbXw72gqJR Yz6b7EISOYJV0/oWMCVep+t0ZazS/0I3giXCZDDB9wtwL8kGon8GrGcdur9FLQ/q gVwmLcWmNb4C8tWeu9dZ1D2ANc6FNxh5Q3MEN8xghWK/eHUJHUWLOslQLDNf5ONE bG7onwGZuwBAxQIMfdjZ4jaLN7hofWAM5cvV46xlFZOYMruavCUuuGkNCpCBKW4i qEyRcfnBvQNdZ5nvGdVGMVh8D693gZNqCsMeEWcmeNXyBzjJO78J4VpsFJooioeD TxeicIzkeCodNpEO+1nVYyK5/yWRpdnjlExdovP7oietOACAG1hlT8xw0kvJYp3A Gl6hhLscGle/HQbS/CbGXYQU2EfmPi49Oyadz2nCKtXYC7AJC6EyQJRROiWdzGRW 6wQWDsKJzAe1/Ui3Ic9uUBO2EA2NHXTiDqGOQe9IbS8MV0gMJ4wAKV5b1QtJO5wd 9oDhksnY5Twu956+7dlvvDiUZVIxPik4kdraPZIBmE5tkoguByQ= =2dF2 -----END PGP SIGNATURE----- --FDheETaGpG7IMn6A-- ------------=_1610965142-20602-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 14 Jan 2021 18:35:28 +0000 Received: from localhost ([127.0.0.1]:39162 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1l07Sy-0000dw-Ds for submit@debbugs.gnu.org; Thu, 14 Jan 2021 13:35:28 -0500 Received: from lists.gnu.org ([209.51.188.17]:51578) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1l07Sw-0000do-Bx for submit@debbugs.gnu.org; Thu, 14 Jan 2021 13:35:27 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:52520) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1l07Su-0004iT-71 for guix-patches@gnu.org; Thu, 14 Jan 2021 13:35:26 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:46433) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1l07Sn-0000q4-V4 for guix-patches@gnu.org; Thu, 14 Jan 2021 13:35:23 -0500 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 8E2F1A00E7 for ; Thu, 14 Jan 2021 19:34:59 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1610649299; x=1612463700; bh=k0aSPawqFRbb3w1rDYvJd6zbBd2xLh8btTkE+8N3Zzs=; b=UolTBGwCdzem IAvUg5tV0nbJMY+H9TnBY8p+b4t1UkFwRGhPt05qyGSgZIy7+DH/kIshn6ToU4uu /VKKbdNg3o4SmM4eLYzywIgMZTC83YvvZMYqcpb+/mX4JQSa6ZQ4YcAv08VhGttA hqW+sJUfabLsx6IpoAT2Ll5/rTc6q8g= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id nipyAq_Gxqtb for ; Thu, 14 Jan 2021 19:34:59 +0100 (CET) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Thu, 14 Jan 2021 19:34:59 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2106.2; Thu, 14 Jan 2021 19:34:58 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: mafft: Update to 7.475. Date: Thu, 14 Jan 2021 19:34:15 +0100 Message-ID: <20210114183415.11844-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.30.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3080-8.6.1012-25912.002 X-TM-AS-Result: No-10--3.147100-8.000000 X-TMASE-MatchedRID: KJIp1PuCboC6/eEqqZaZmj8Ckw9b/GFeTJDl9FKHbrmAI7Mvq/sL53sm Ebb/mVvOC6+Zjvylmgt6n3hIvN5dLffPo4nyNKG1weku330t3muikZBjlts/cm8ivTjuIMaBUAr JnwHoG3R25U0AxYNtt7VijUdnqQBWj2hRzH1UwuAURSScn+QSXt0H8LFZNFG76sBnwpOylLNiHL XsE89bWMTJLzKM98xfSq6rQyyDtMcNh/RDngFdYURMASxEz8090aRDDTNILiGkT/dVBrRTPDmiy sF2kf4E4QMe98EdjT/ox9rqorLqIj47jot1RqlnCuhB+Hs2Q+XFRuRzIFoKqH7cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.147100-8.000000 X-TMASE-Version: SMEX-14.0.0.3080-8.6.1012-25912.002 X-TM-SNTS-SMTP: 8E265212CEBE47BF17AACAEC24B2EB26BFD3523718AB6345A0F9D8AE10B1BADD2000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (mafft): Update to 7.475. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 512abcd8fd..62882e672c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4687,7 +4687,7 @@ sequencing tag position and orientation.") (define-public mafft (package (name "mafft") - (version "7.471") + (version "7.475") (source (origin (method url-fetch) (uri (string-append @@ -4696,7 +4696,7 @@ sequencing tag position and orientation.") (file-name (string-append name "-" version ".tgz")) (sha256 (base32 - "0r1973fx2scq4712zdqfy67wkzqj0c0bhrdy4jxhvq40mdxyry30")))) + "0i2i2m3blh2xkbkdk48hxfssks30ny0v381gdl7zwhcvp0axs26r")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; no automated tests, though there are tests in the read me -- 2.30.0 ------------=_1610965142-20602-1--