GNU bug report logs - #45399
[PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#45399: closed ([PATCH 00/10] Move some Bioconductor packages
 to (gnu packages bioconductor).)
Date: Tue, 29 Dec 2020 16:43:02 +0000

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Your message dated Tue, 29 Dec 2020 17:42:16 +0100
with message-id <87czyslg2f.fsf <at> elephly.net>
and subject line Re: [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
has caused the debbugs.gnu.org bug report #45399,
regarding [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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From: zimoun <zimon.toutoune <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 00/10] Move some Bioconductor packages to (gnu packages
 bioconductor).
Date: Wed, 23 Dec 2020 19:03:38 +0100

Hi,

Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 7
pacth set like this one are coming...

1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>


To transfer the Copyright, I use:

   git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>

Then, after the move, I run:

   ./pre-inst-env guix build r-<name> --no-grafts
   ./pre-inst-env guix build r-<name> --no-grafts --check

and at the end of the series, I run:

    make as-derivation

to check that "guix pull" is not broken; just in case.

Last, I have not carefully checked the imported modules, so it could
be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
in gnu/packages/bioinformatics.scm.

All the best,
simon

zimoun (10):
  gnu: r-sushi: Move to (gnu packages bioconductor).
  gnu: r-gwascat: Move to (gnu packages bioconductor).
  gnu: r-gviz: Move to (gnu packages bioconductor).
  gnu: r-gqtlstats: Move to (gnu packages bioconductor).
  gnu: r-ldblock: Move to (gnu packages bioconductor).
  gnu: r-erma: Move to (gnu packages bioconductor).
  gnu: r-homo-sapiens: Move to (gnu packages bioconductor).
  gnu: r-snpstats: Move to (gnu packages bioconductor).
  gnu: r-gqtlstats: Move to (gnu packages bioconductor).
  gnu: r-ggbio: Move to (gnu packages bioconductor).

 gnu/packages/bioconductor.scm   | 400 +++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 405 --------------------------------
 2 files changed, 400 insertions(+), 405 deletions(-)


base-commit: 4994e1f2bd9b573d2c13abf2b98ec204f510ad11
-- 
2.29.2

[Message part 3 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: zimoun <zimon.toutoune <at> gmail.com>
Cc: 45399-done <at> debbugs.gnu.org
Subject: Re: [bug#45399] [PATCH 00/10] Move some Bioconductor packages to
 (gnu packages bioconductor).
Date: Tue, 29 Dec 2020 17:42:16 +0100

zimoun <zimon.toutoune <at> gmail.com> writes:

> Hi,
>
> Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
> bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 7
> pacth set like this one are coming...
>
> 1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>

Excellent!

Pushed with commit 610cd6a170.

Thanks!

-- 
Ricardo

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