GNU bug report logs - #45399
[PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).

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From: zimoun <zimon.toutoune <at> gmail.com>
To: 45399 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [bug#45399] [PATCH 05/10] gnu: r-ldblock: Move to (gnu packages bioconductor).
Date: Wed, 23 Dec 2020 19:06:30 +0100

* gnu/packages/bioinformatics.scm (r-ldblock): Move from here...
* gnu/packages/bioconductor.scm (r-ldblock): ...to here.
---
 gnu/packages/bioconductor.scm   | 34 +++++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 34 ---------------------------------
 2 files changed, 34 insertions(+), 34 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1bf9a49272..40a02dbe7f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9405,6 +9405,40 @@ maintaining all essential pathway attributes.  The package offers
 functionalities including parsing, graph operation, visualization and etc.")
     (license license:gpl2+)))
 
+(define-public r-ldblock
+  (package
+    (name "r-ldblock")
+    (version "1.20.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "ldblock" version))
+       (sha256
+        (base32
+         "09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocgenerics" ,r-biocgenerics)
+       ("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75)
+       ("r-ensembldb" ,r-ensembldb)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-genomicfiles" ,r-genomicfiles)
+       ("r-httr" ,r-httr)
+       ("r-matrix" ,r-matrix)
+       ("r-rsamtools" ,r-rsamtools)
+       ("r-snpstats" ,r-snpstats)
+       ("r-variantannotation" ,r-variantannotation)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/ldblock")
+    (synopsis "Data structures for linkage disequilibrium measures in populations")
+    (description
+     "This package defines data structures for @dfn{linkage
+disequilibrium} (LD) measures in populations.  Its purpose is to simplify
+handling of existing population-level data for the purpose of flexibly
+defining LD blocks.")
+    (license license:artistic2.0)))
+
 (define-public r-pathview
   (package
     (name "r-pathview")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 67b4c4cb73..25021f1ee8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10695,40 +10695,6 @@ metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines
 by Ernst and Kellis.")
     (license license:artistic2.0)))
 
-(define-public r-ldblock
-  (package
-    (name "r-ldblock")
-    (version "1.20.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (bioconductor-uri "ldblock" version))
-       (sha256
-        (base32
-         "09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm"))))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-biocgenerics" ,r-biocgenerics)
-       ("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75)
-       ("r-ensembldb" ,r-ensembldb)
-       ("r-genomeinfodb" ,r-genomeinfodb)
-       ("r-genomicfiles" ,r-genomicfiles)
-       ("r-httr" ,r-httr)
-       ("r-matrix" ,r-matrix)
-       ("r-rsamtools" ,r-rsamtools)
-       ("r-snpstats" ,r-snpstats)
-       ("r-variantannotation" ,r-variantannotation)))
-    (native-inputs
-     `(("r-knitr" ,r-knitr)))
-    (home-page "https://bioconductor.org/packages/ldblock")
-    (synopsis "Data structures for linkage disequilibrium measures in populations")
-    (description
-     "This package defines data structures for @dfn{linkage
-disequilibrium} (LD) measures in populations.  Its purpose is to simplify
-handling of existing population-level data for the purpose of flexibly
-defining LD blocks.")
-    (license license:artistic2.0)))
-
 (define-public r-dropbead
   (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
         (revision "2"))
-- 
2.29.2

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