Subject: bug#45399: closed (Re: [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).)

From: [email-masked] (GNU bug Tracking System)
Date: Tue, 29 Dec 2020 16:43:02 +0000

Your bug report

#45399: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
45399: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=45399
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: Re: [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
From: Ricardo Wurmus <[email-masked]>
To: zimoun <[email-masked]>
Cc: [email-masked]
Date: Tue, 29 Dec 2020 17:42:16 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

zimoun <[email-masked]> writes:

> Hi,
>
> Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
> bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 7
> pacth set like this one are coming...
>
> 1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>

Excellent!

Pushed with commit 610cd6a170.

Thanks!

-- 
Ricardo

Subject: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
From: zimoun <[email-masked]>
To: [email-masked]
Cc: zimoun <[email-masked]>
Date: Wed, 23 Dec 2020 19:03:38 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

Hi,

Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 7
pacth set like this one are coming...

1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>

To transfer the Copyright, I use:

   git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>

Then, after the move, I run:

   ./pre-inst-env guix build r-<name> --no-grafts
   ./pre-inst-env guix build r-<name> --no-grafts --check

and at the end of the series, I run:

    make as-derivation

to check that "guix pull" is not broken; just in case.

Last, I have not carefully checked the imported modules, so it could
be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
in gnu/packages/bioinformatics.scm.

All the best,
simon

zimoun (10):
  gnu: r-sushi: Move to (gnu packages bioconductor).
  gnu: r-gwascat: Move to (gnu packages bioconductor).
  gnu: r-gviz: Move to (gnu packages bioconductor).
  gnu: r-gqtlstats: Move to (gnu packages bioconductor).
  gnu: r-ldblock: Move to (gnu packages bioconductor).
  gnu: r-erma: Move to (gnu packages bioconductor).
  gnu: r-homo-sapiens: Move to (gnu packages bioconductor).
  gnu: r-snpstats: Move to (gnu packages bioconductor).
  gnu: r-gqtlstats: Move to (gnu packages bioconductor).
  gnu: r-ggbio: Move to (gnu packages bioconductor).

 gnu/packages/bioconductor.scm   | 400 +++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 405 --------------------------------
 2 files changed, 400 insertions(+), 405 deletions(-)

base-commit: 4994e1f2bd9b573d2c13abf2b98ec204f510ad11
-- 
2.29.2