Subject: [bug#45399] [PATCH 02/10] gnu: r-gwascat: Move to (gnu packages bioconductor).

From: zimoun <[email-masked]>
Date: Wed, 23 Dec 2020 19:06:27 +0100

* gnu/packages/bioinformatics.scm (r-gwascat): Move from here...
* gnu/packages/bioconductor.scm (r-gwascat): ...to here.
---
 gnu/packages/bioconductor.scm   | 33 +++++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 33 ---------------------------------
 2 files changed, 33 insertions(+), 33 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3dd34e7f24..970602a32b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9241,6 +9241,39 @@ preprocessing of cytometry data, including i) normalization using bead
 standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
     (license license:gpl2+)))
 
+(define-public r-gwascat
+  (package
+    (name "r-gwascat")
+    (version "2.22.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "gwascat" version))
+       (sha256
+        (base32
+         "1aqi1ny93virnzsxkh9ccx3mws70bgv0r8nwgla09vffb7f16nna"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)
+       ("r-biocfilecache" ,r-biocfilecache)
+       ("r-biostrings" ,r-biostrings)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-genomicfeatures" ,r-genomicfeatures)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-iranges" ,r-iranges)
+       ("r-readr" ,r-readr)
+       ("r-s4vectors" ,r-s4vectors)
+       ("r-snpstats" ,r-snpstats)
+       ("r-variantannotation" ,r-variantannotation)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/gwascat")
+    (synopsis "Tools for data in the EMBL-EBI GWAS catalog")
+    (description
+     "This package provides tools for representing and modeling data in the
+EMBL-EBI GWAS catalog.")
+    (license license:artistic2.0)))
+
 (define-public r-kegggraph
   (package
     (name "r-kegggraph")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6ef93d9b62..ab187dcddd 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10834,39 +10834,6 @@ grid graphics package.  This results in genomic information plotted together
 with your data.")
     (license license:artistic2.0)))
 
-(define-public r-gwascat
-  (package
-    (name "r-gwascat")
-    (version "2.22.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (bioconductor-uri "gwascat" version))
-       (sha256
-        (base32
-         "1aqi1ny93virnzsxkh9ccx3mws70bgv0r8nwgla09vffb7f16nna"))))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-annotationdbi" ,r-annotationdbi)
-       ("r-biocfilecache" ,r-biocfilecache)
-       ("r-biostrings" ,r-biostrings)
-       ("r-genomeinfodb" ,r-genomeinfodb)
-       ("r-genomicfeatures" ,r-genomicfeatures)
-       ("r-genomicranges" ,r-genomicranges)
-       ("r-iranges" ,r-iranges)
-       ("r-readr" ,r-readr)
-       ("r-s4vectors" ,r-s4vectors)
-       ("r-snpstats" ,r-snpstats)
-       ("r-variantannotation" ,r-variantannotation)))
-    (native-inputs
-     `(("r-knitr" ,r-knitr)))
-    (home-page "https://bioconductor.org/packages/gwascat")
-    (synopsis "Tools for data in the EMBL-EBI GWAS catalog")
-    (description
-     "This package provides tools for representing and modeling data in the
-EMBL-EBI GWAS catalog.")
-    (license license:artistic2.0)))
-
 (define-public r-dropbead
   (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
         (revision "2"))
-- 
2.29.2