GNU bug report logs - #45281
[PATCH] gnu: Add r-org-eck12-eg-db.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#45281: closed ([PATCH] gnu: Add r-org-eck12-eg-db.)
Date: Thu, 17 Dec 2020 11:29:02 +0000

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Your message dated Thu, 17 Dec 2020 12:27:51 +0100
with message-id <87o8isoeo8.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add r-org-eck12-eg-db.
has caused the debbugs.gnu.org bug report #45281,
regarding [PATCH] gnu: Add r-org-eck12-eg-db.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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45281: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=45281
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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: rekado <at> elephly.net, Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-org-eck12-eg-db.
Date: Wed, 16 Dec 2020 22:59:42 +0100

* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3026d1a496..2d96cc7766 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9273,3 +9273,30 @@ graphs.  It parses the regularly updated kgml (Kegg xml) files into graph models
 maintaining all essential pathway attributes.  The package offers
 functionalities including parsing, graph operation, visualization and etc.")
     (license license:gpl2+)))
+
+(define-public r-org-eck12-eg-db
+  (package
+    (name "r-org-eck12-eg-db")
+    (version "3.12.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "org.EcK12.eg.db" version 'annotation))
+       (sha256
+        (base32 "0c4p6jr83k0gm6pvn760yr8xf33wggrfcr6fg7a42a96bcf817gs"))))
+    (properties
+     `((upstream-name . "org.EcK12.eg.db")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)))
+    (home-page "https://bioconductor.org/packages/org.EcK12.eg.db")
+    (synopsis "Genome wide annotation for E coli strain K12")
+    (description
+     "This package provides genome wide annotation for E coli strain K12,
+primarily based on mapping using Entrez Gene identifiers.  Entrez Gene is
+National Center for Biotechnology Information (NCBI)’s database for
+gene-specific information.  Entrez Gene maintains records from genomes which
+have been completely sequenced, which have an active research community to
+submit gene-specific information, or which are scheduled for intense sequence
+analysis.")
+    (license license:artistic2.0)))
-- 
2.29.2

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 45281-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-org-eck12-eg-db.
Date: Thu, 17 Dec 2020 12:27:51 +0100

Applied, thanks!

-- 
Ricardo

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