GNU bug report logs - #44819
[PATCH 1/2] gnu: Add python-pynndescent.

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From: Vinicius Monego <monego <at> posteo.net>
To: 44819 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [bug#44819] [PATCH 1/2] gnu: Add python-pynndescent.
Date: Mon, 23 Nov 2020 12:38:13 -0300

* gnu/packages/machine-learning.scm (python-pynndescent): New variable.
---
Version 0.5.x was released days ago but it changes the API and breaks OpenTSNE tests.

 gnu/packages/machine-learning.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 34b522c99b..2ad148b48e 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -65,6 +65,7 @@
   #:use-module (gnu packages gstreamer)
   #:use-module (gnu packages image)
   #:use-module (gnu packages linux)
+  #:use-module (gnu packages llvm)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages mpi)
   #:use-module (gnu packages ocaml)
@@ -869,6 +870,32 @@ data analysis.")
                  (base32
                   "08zbzi8yx5wdlxfx9jap61vg1malc9ajf576w7a0liv6jvvrxlpj")))))))
 
+(define-public python-pynndescent
+  (package
+    (name "python-pynndescent")
+    (version "0.4.8")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pynndescent" version))
+       (sha256
+        (base32 "0li1fclif50v6xrq7wh3lif9vv5jpj7xhrb0z6g89wwjnp9b9833"))))
+    (build-system python-build-system)
+    (native-inputs
+     `(("python-nose" ,python-nose)))
+    (propagated-inputs
+     `(("python-joblib" ,python-joblib)
+       ("python-llvmlite" ,python-llvmlite)
+       ("python-numba" ,python-numba)
+       ("python-scikit-learn" ,python-scikit-learn)
+       ("python-scipy" ,python-scipy)))
+    (home-page "https://github.com/lmcinnes/pynndescent")
+    (synopsis "Nearest neighbor descent for approximate nearest neighbors")
+    (description
+     "PyNNDescent provides a Python implementation of Nearest Neighbor Descent
+for k-neighbor-graph construction and approximate nearest neighbor search.")
+    (license license:bsd-2)))
+
 (define-public python-scikit-rebate
   (package
     (name "python-scikit-rebate")
-- 
2.20.1

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