GNU bug report logs - #44613
[PATCH] Fix build for bedtools

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From: Roel Janssen <roel <at> gnu.org>
To: 44613 <at> debbugs.gnu.org
Subject: [bug#44613] [PATCH] Fix build for bedtools
Date: Fri, 13 Nov 2020 12:01:04 +0100

[Message part 1 (text/plain, inline)]

Dear Guix,

By updating samtools to 1.11, I introduced a build failure for
bedtools. More precisely, the tests for intersect break in precisely
this way:
https://github.com/arq5x/bedtools2/issues/814

With the following patches, I'd like to add samtools-1.9, htslib-1.9
(samtools depends on that) to fix this problem with bedtools.

Alternatively we could add a patch to disable the failing bedtools
tests.  I manually inspected the test results, and seem to match
perfectly (indicating that there's no problem with bedtools).

Kind regards,
Roel Janssen

[0003-gnu-bedtools-Use-samtools-1.9.patch (text/x-patch, attachment)]

[0002-gnu-Add-samtools-1.9.patch (text/x-patch, attachment)]

[0001-gnu-Add-htslib-1.9.patch (text/x-patch, attachment)]

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