From unknown Sun Aug 17 09:10:35 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#44450 <44450@debbugs.gnu.org> To: bug#44450 <44450@debbugs.gnu.org> Subject: Status: Issues installing Avogadro Reply-To: bug#44450 <44450@debbugs.gnu.org> Date: Sun, 17 Aug 2025 16:10:35 +0000 retitle 44450 Issues installing Avogadro reassign 44450 guix submitter 44450 Godefroy Vannoye severity 44450 normal thanks From debbugs-submit-bounces@debbugs.gnu.org Wed Nov 04 13:29:43 2020 Received: (at submit) by debbugs.gnu.org; 4 Nov 2020 18:29:43 +0000 Received: from localhost ([127.0.0.1]:50568 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kaNXS-0003YG-4Q for submit@debbugs.gnu.org; Wed, 04 Nov 2020 13:29:43 -0500 Received: from lists.gnu.org ([209.51.188.17]:47538) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kaNMA-0003GZ-NU for submit@debbugs.gnu.org; Wed, 04 Nov 2020 13:18:03 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:46686) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kaNMA-00016D-IG for bug-guix@gnu.org; Wed, 04 Nov 2020 13:18:02 -0500 Received: from mail-wr1-x429.google.com ([2a00:1450:4864:20::429]:39690) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kaNM8-0006oY-T2 for bug-guix@gnu.org; Wed, 04 Nov 2020 13:18:02 -0500 Received: by mail-wr1-x429.google.com with SMTP id y12so23093889wrp.6 for ; Wed, 04 Nov 2020 10:18:00 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=to:from:subject:autocrypt:message-id:date:user-agent:mime-version :content-transfer-encoding:content-language; bh=KMjUIVIi66bzJ9cxxgQapVc4IXgvoo/+RPPZyJjeqH8=; b=B63LZ7LSTdWZrX9xlzToHAbg801v5WZQmOAGyPkHM0GIFXJTfsZwBU4esXVUWO5HRX qnMr1sqIiANnEDRKwLnNh6VmsYUQp5S/q7hf30zBRGrhdqjsOlCrjboBdY3EOl4yHyTH 65AMHQcGTQpIk7tk7QgVZ2uKVDHE6beh/Bk25hkEF1N+Nn3uVgnB/ut1NCBilwoK6IK3 f/D/R+FQWQ7xoW0iID12B1fAA4NBm6jpiR/ubujIYolvGHYLlqkEfzD7gkJTakKVN6sX TaB+xJxuwFhaEFcbfmk/drLqSA2FrI3Az/NS7RcF9Qir3Sl16+a5thpxFiJlnEMxjFDF QdnA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:to:from:subject:autocrypt:message-id:date :user-agent:mime-version:content-transfer-encoding:content-language; bh=KMjUIVIi66bzJ9cxxgQapVc4IXgvoo/+RPPZyJjeqH8=; b=bYW8m9RV3TXurYQZv3uVQruXvdrvoWBvkN2GCs9KC+jpNe3dIvN+EvHjCGmQyoaw5P qBl9Ve3ULLsVqjfho5yIvMaMRULc9Fn+btp+raKrUOkMQPEOppCSRlBksq5b46BCgQ1K QJeB7ko6k/G6LA4OUnLhlC8qYNqnYxn2ExAXWL2eN/jPGAlGlFn1jrF+LndXsBGX1xew egkZR4U6TIeJhQBKgp3IBeok+L2YS7o8lEEVsoqzamL57cQb4PNa90ZfiF7yhehf+IZp cfeL6PnXEvaf1dsZR7e5mu8BSaHgPbQ+LGajoYIu6Avv822kvB3nPinyLwpkV/TfOCzY Z1TQ== X-Gm-Message-State: AOAM532SiwoOLusnffu9EejJRU1eyCeV8x/Fke8CowsEsTHTzhliMFuS yz91zXgO5oKSQo+mtQxmzJDeD32iUOBA2g== X-Google-Smtp-Source: ABdhPJxI6zVs5MpAm/uqO3zyEMqDvquiNlQ+VQO0W/PUfStEFilIk3AOhkl/MDcrQzi9k3KXF7unUQ== X-Received: by 2002:a5d:4b12:: with SMTP id v18mr33191031wrq.259.1604513878502; Wed, 04 Nov 2020 10:17:58 -0800 (PST) Received: from [192.168.1.101] (static-176-185-165-179.axione.abo.bbox.fr. [176.185.165.179]) by smtp.gmail.com with ESMTPSA id m4sm3837269wrr.47.2020.11.04.10.17.57 for (version=TLS1_3 cipher=TLS_AES_128_GCM_SHA256 bits=128/128); Wed, 04 Nov 2020 10:17:57 -0800 (PST) To: bug-guix@gnu.org From: Godefroy Vannoye Subject: Issues installing Avogadro Autocrypt: addr=godefroy.vannoye@ens-lyon.fr; prefer-encrypt=mutual; keydata= LS0tLS1CRUdJTiBQR1AgUFVCTElDIEtFWSBCTE9DSy0tLS0tCgptUUVOQkZvNm51d0JDQUM2 bjViUlh3SlJjMEhLelljTlpBZVJVc0h1dGlNMHg4VlZzWGtoNGpWaCtkWG5EYW84ClFGcVlW NUhiem9JNnNxeHB0U1NuMVZ5SUc3THoyUzlkclp5eUFYSDNUOFdWVjNRRkFxNTJ4MDVXb1BD NGZtbzYKKzQzNUNrNXBxMWdqWXQ5eThtTXNSeGVITnZZMHk4c2lNQU9zb3dCcmdwcFh4YmVa dmtFcXZXcTFHeFJWMjVBZwpiODFMVlFpYzZwWGhmT3FUK1ozUGkyOGV0YkpFTVJiSERQTTEy Nm8vNDJzeG1oTCt0Z21wMzFzZHF0dDRZRXErClg0VnpYTWRIN0w0Q3UyYlFQcVZmbGF2aHJF SEZIZmhPZ1lQdUZmR3A2aGJlMno1RnNWZS83ZDFHQlJ4a09HN2YKVHZ1ZjlrVDA2dE5CRVl2 RnE4Tk93bU50U2VqTklmY2ZiSW4vQUJFQkFBRzBMMGR2WkdWbWNtOTVJRlpoYm01dgplV1Vn UEdkdlpHVm1jbTk1TG5aaGJtNXZlV1ZBWlc1ekxXeDViMjR1Wm5JK2lRRlJCQk1CQ0FBN0Fo c0RCUXNKCkNBY0RCUlVLQ1FnTEJSWUNBd0VBQWg0QkFoZUFGaUVFOFpDT280ckExYXUzV0xn aDFOR2FaSm1Gc1hRRkFseXgKelZJQ0dRRUFDZ2tRMU5HYVpKbUZzWFE1eXdmL2JOQWRZNEEx RFc1cnAwUHo4b1FQSFI4REtqRGJUZmZka3l2TQpubUZEblQzZjBPOTBhZ2hNSUg0NUE4b1hi L2YwZTd3UmpNMzBQem9TVzlkU2Y2UDdJWEtxc2I5emtDK1pUZnpYClJmZmFNUDhlWHYvYy9n UDhRYWlwQnB5VTBmNXlFMTltWEZ6UlJ1K2lRRGZpSW9ibTM0Zi8yOGM0YzB3eGxKRVQKckl1 amdDWW5BWDFxNDRUVWdIZU4ySFpvcTZ3dkpKT08vRzNpSFI3ZXNtVE80eUlFT2J6L0hYRElI MVFocTJBbApRQW4vaGwwRE5MaGlvVVh4enRRSzBMQytBK1dxMHduaHVzL3lvOU1NR2tES005 WFBSVkJHUlJLRnVBTnU5VTBDCmlmN0MreDI5cjN5N2RIbmFYYUxoUEpWMlpNRHZVbGpkbTJx bzBVbnVyeDROSnNVYkJya0JEUVJhT3A3c0FRZ0EKeFVHRlhkQ3RyQjdUN2Y0OCtQUkdNQkZL a21QM0s1ZWY5VjFDR1llaGZxaE1ieXpsQm53UzYzTzBsdXY3Z01OSQpGQnJTRTVXWTQ0NDNE UTlQUFVJVzU4VFh0aHA1Y2NCVlNyTTZXTTdpLzdwM09nUHhaY3pPdjhnWHoxa3FiOWIxCndw TkdtdjBUYU5Rd3pYbndKY21BREZwSU12c3luWWNoK20wUTJTeWZ6aHJuRExjMEk1QnBEY2ha RFJ3TUdxdTgKdUxFK2Mwd0haaEkwRHRLTTkxYjVYQ1BLakVjcGhLc2ZjMHV0WU5SSThDaGM3 S1dmU1R3OE8yamg2TXYvTlIzUwpiaWlvL1hsa1JoeUhEZit2dzljR1E2cmdIeVpxR3c4ZWFX RTRCYWNxazFGem85K01URnZ0THFKNXQ4V3BubEFGCm1EV2Y0TE1BMTJ4WityV1JBNlFCU1FB UkFRQUJpUUUyQkJnQkNBQWdGaUVFOFpDT280ckExYXUzV0xnaDFOR2EKWkptRnNYUUZBbG82 bnV3Q0d3d0FDZ2tRMU5HYVpKbUZzWFFNWkFmL2FpUy82MzNUb0RtMHdSWFMwR3RXWnVCbgp2 K0dyNHprQVdxM3VncFBBSFVCQTNxVmtzYno5Yjg1aE00K2ZxYWZKVXVZTzYrNjRtc2NhWHpS QzJNVDNRZzhuCjZ5OVNjSk9QMFVFZjFPSG1Na3IrNU1LdHdiUkRUNjNtdzlLa29kZFZkZFA2 OGh0WDhXd3NqYmFwcDdLRVJIVG0KVE9lb1U4KzJWTHlHbHo2MFBKV1cxaU9abm40TDQ4NmFl NG8zMFcyWitnb1FsaVFnMkNCaVRUK2U3d3BtNGRlYwpveTNWbzBkaXVsZTdINWpOY0ExSHVQ bTJDUzNlSCswSmNkRXlmNlZiZVM0YXhTOTV1eEdxM0xtSVliTXN3V3p3CnV0bkhpbmdRdUNG cUZGMHFXTkF3Tm10clBEMG1WelFSN25lU1AvT3lsRXVOWEZ2UWN6QUlTQnNNK2FSeGdia0IK RFFSY3FISkhBUWdBMDdlSHRjR1Z4MVNFRnpYeVdocWNadmEzb0JWYVNKVXZiVFA0cGMyREtM eHpCblFkcjhlZwpUVElJcGQzSlhqaXV1VVErWHJ2cE53WkxPTE4ybVhEd2tOaVdxVHUrblNh WUlSaHdQSHNOVVo5cWFIblBqV3J4CmZJS0RVUnlmWlRnTnhuekY4M1RjYlpkSFF2MHpUUW9w Nk45YiswN1ROUTlFTFc3d2VmRE1sQ0t5TUsyVDNmWU0KNFNKNVZkcWszdHpwYnJDUHNrbW0v Rm1TbzNGd2d0K1ZoRWx0a3Y0SzRqekdkNlJHTVN2eXpwM01CQkFlRmo3WQpzNlF5YVRINTFy TGJwV1VxdGVOTUNDZFZERVlxSWVZUXlLNVFnb09rdWM3dlV6SEcrQmVRRnQ2MzhRZHhiekZw CjVWN2JqdVYzYWdhSk9ETnZQcWt4d2cwaWJOTkFuSFRGZlFBUkFRQUJpUUpzQkJnQkNBQWdG aUVFOFpDT280ckEKMWF1M1dMZ2gxTkdhWkptRnNYUUZBbHlvY2tjQ0d3SUJRQWtRMU5HYVpK bUZzWFRBZENBRUdRRUlBQjBXSVFRYQp2T0R6SUxRb2lReEtBeVRaclIrWEZkY3Q3QVVDWEto eVJ3QUtDUkRaclIrWEZkY3Q3RWFHQ0FER1Y1L1BHNGpYCm9zR1FEOGtWTlZ0Z2l6RnNUOWZO L0JzWFkzZzBjZi84aGZCeUpmOEN5UXpUcUZrR2RrMDVLYnB2c3M2SE40d24KREpRKzdUblVM akluYllLUEZ0OXlUUi9GNnlacko0ZmJyM1VNMHA1NzUvV3JBRjhMZmVNdlBFbmVLRFJMZUpj dQphdGFwUWF6cjRESExyZStKZHJYZDIvUmduTDdtaG5qWXhNNm9XZUdpTmwyMGU2djJTOHc2 M0dQazk4bzJhVDQ4Cm1XUW1EZTg2NDFCdGh1cEVwSGhiUlFFS3p5R2l1eHZhMEVvbUlNSks0 ZE41ZE0yZkRXd2dyS0tmNnVHeFU3SVMKQXQyQlpKeStRN3MvMS9ZU2NXQ2Z0d0VNbFJUL2J0 YUM5Zm9TUTl5SWw4emhRWTNuVmd2OWY1TG5jek5QMzJITgpxbzNkMzZvVXpSOGxZdVFILzEr M1ZJTGhUcThJMGU0REZhdkJ0dVdqNnlONFR0TUhUbGlHN2NNUldtZlptdHZGClB3bWQ5dGVh MUJObEdhQWFwWW1NV2JYZk1pcng4SjhpR1liYmhsRXJGY3lMdjlheFI1RkNSZ1FTSnYrSE9Z T3EKNmdxWW12bno2RVYwTzQwOHFDd2JxSFpNR3hJdTF5cGhIc1JNaHB5UTgrZUhGWFAwbitQ UmVheVVSdmE5NG4wRwpYNElqUXZPb2VzRVpoTnIxL2tSVTJGODdtMUlkcHdzU1REN1FBYnF4 dFhjNlFIaDRIajlOTkt5Q28rZkp2Uy9IClFhQjludWs5bnNTWFBDUk9CQlNCUjFtUWVjdEZO Y0RXU1UxaG9IaytEME9KRnN5dTZsUXd3VU04aXVWaUZoOHkKYjhRWUlQS3p3YXZjM1RLUElZ bGNLcVJCNm9oM2IyWE1kZG9McE1JPQo9c1pQUgotLS0tLUVORCBQR1AgUFVCTElDIEtFWSBC TE9DSy0tLS0tCg== Message-ID: <2f4832e0-c173-bd24-fd77-9d6b587f6095@gmail.com> Date: Wed, 4 Nov 2020 19:17:56 +0100 User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:68.0) Gecko/20100101 Thunderbird/68.12.0 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 7bit Content-Language: en-US-large Received-SPF: pass client-ip=2a00:1450:4864:20::429; envelope-from=godefroy.vannoye@gmail.com; helo=mail-wr1-x429.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.4 (/) X-Debbugs-Envelope-To: submit X-Mailman-Approved-At: Wed, 04 Nov 2020 13:29:41 -0500 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) Hi, First let me apologize if I have missed something, I'm a new user of guix and know only the basics about compilation processes. I am using guix on the Arch distribution, and installed it using the shell installer script. My first tests seem to indicate that guix is installed properly. I then tried to install Avogadro, but met the following error when building it: make[1]: Leaving directory '/tmp/guix-build-avogadro-1.2.0.drv-0/build' make: *** [Makefile:155: all] Error 2 command "make" "-j" "4" failed with status 2 note: keeping build directory `/tmp/guix-build-avogadro-1.2.0.drv-0' builder for `/gnu/store/pc3pdcpm0mwbfvymwizfs14mdfb6qa5x-avogadro-1.2.0.drv' failed with exit code 1 build of /gnu/store/pc3pdcpm0mwbfvymwizfs14mdfb6qa5x-avogadro-1.2.0.drv failed I retried to build it by running guix build avogadro -K to look at the makefile and found at line 155 cd /tmp/guix-build-avogadro-1.2.0.drv-0/build && $(MAKE) -f CMakeFiles/Makefile2 libavogadro/all This is the first line of the makefile where $(MAKE) appears, but I could not find where it was defined (I suppose it is defined as make -j4, but it is not explicit in the makefile or in environment-variables). This makes me assume that the error comes from the $(MAKE), but I'm not knowledgeable enough to verify it. Feel free to ask me anything or to explain me what I could have done wrong. Thank you for your work and for your time, Godefroy Vannoye From debbugs-submit-bounces@debbugs.gnu.org Mon Nov 09 18:30:57 2020 Received: (at 44450) by debbugs.gnu.org; 9 Nov 2020 23:30:57 +0000 Received: from localhost ([127.0.0.1]:35861 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kcGci-00059U-NM for submit@debbugs.gnu.org; Mon, 09 Nov 2020 18:30:57 -0500 Received: from mail-wm1-f48.google.com ([209.85.128.48]:50980) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kcGcg-00059B-E5 for 44450@debbugs.gnu.org; Mon, 09 Nov 2020 18:30:54 -0500 Received: by mail-wm1-f48.google.com with SMTP id h2so1261772wmm.0 for <44450@debbugs.gnu.org>; Mon, 09 Nov 2020 15:30:54 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:subject:in-reply-to:references:date:message-id:mime-version :content-transfer-encoding; bh=ICG6M9jV7R23sq0Gi1LLIUirmssQDTn6xTOyTVb9vLE=; b=ch/S2hkND/RfHKARnyRZ47i9Mph0qmYeJjE15HPcMKJ8ZJrxXfyrjt9AfpS3ARmOll pl8zNA7FqxZ9jbmoIROP4PB7BvhvGniYi2+xqq5d8ppECrxY0YXnu5+eIAuZ7DJb0R2B bW4DY6WOgj8TcvS3y9Wp70AA+I/acXphYIeyvkl+JQEPdtC47hcur/XkhMXL7VN/6aKX fiTjgV7V78xY8sINyy+xn+qVZubFmIKnSTOyKQrSMJiMf93lVgimzBIZFjr02MyXkboe XPa/A32q28H1MWf6hRheSn2OaQQmeq5mcva5n8qdN6D7VXQqjKpRqefnn2YjkxszFTnp t49g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:subject:in-reply-to:references:date :message-id:mime-version:content-transfer-encoding; bh=ICG6M9jV7R23sq0Gi1LLIUirmssQDTn6xTOyTVb9vLE=; b=Lbx+0KlGhePdTvF+r+5fF8lIXO4e7Vtir4GrLCC9TigS/TKniQsRbRH5YobnlXIb3A LMBLtMCGZn6V7lENgguJme5GJkYKupMsaCYhD7f0mdhXtUqSivhHJLEWTZb6gBwDbKXk rzKDZkrqf19LQJU0cFaM5zFBxal7ZW2tjyovt4KAMPk7X6fhh2ip5pxtt8FV10UN6Egq UcBo6daucsWvxrojlGbfdpRyPs1EWY9FBGTMmVrGzeAUSNJ9EodqL5KxbQd5IyOQqzjp T5XTUtTsz/LJRi9oBmob7I5HLwBpN2+7DfNKkHnIdJEpSwCfWXnmIa5uB0DUe/+BXIyd j77g== X-Gm-Message-State: AOAM532A2pKd/wqg1Jd5xCCpZP2tH0/nIB0OAmzsbaaB9M5VUnL/Hu1Z U9t1vLLkr2PVewDwjcqB38T+TJaupAGxqA== X-Google-Smtp-Source: ABdhPJxMvNY/cbqfezJVrIxOokx84Cyrct9g39942/gMEPLIVfavYwt7b5KE/7nvkGLNqT5Xej/gRw== X-Received: by 2002:a1c:1d82:: with SMTP id d124mr1659060wmd.12.1604964648284; Mon, 09 Nov 2020 15:30:48 -0800 (PST) Received: from lili ([88.126.110.68]) by smtp.gmail.com with ESMTPSA id 18sm1004770wmo.3.2020.11.09.15.30.47 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 09 Nov 2020 15:30:47 -0800 (PST) From: zimoun To: Godefroy Vannoye , 44450@debbugs.gnu.org Subject: Re: bug#44450: Issues installing Avogadro In-Reply-To: <2f4832e0-c173-bd24-fd77-9d6b587f6095@gmail.com> References: <2f4832e0-c173-bd24-fd77-9d6b587f6095@gmail.com> Date: Tue, 10 Nov 2020 00:27:06 +0100 Message-ID: <86mtzq9kmt.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 44450 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Dear, Thank you for the report. On Wed, 04 Nov 2020 at 19:17, Godefroy Vannoye = wrote: > First let me apologize if I have missed something, I'm a new user of > guix and know only the basics about compilation processes. Welcome! :-) > I am using guix on the Arch distribution, and installed it using the > shell installer script. My first tests seem to indicate that guix is > installed properly. The Guix Data Service indicates that the package avogrado is broken. https://data.guix.gnu.org/repository/1/branch/master/package/avogadro/outpu= t-history > I then tried to install Avogadro, but met the following error when > building it: > > make[1]: Leaving directory '/tmp/guix-build-avogadro-1.2.0.drv-0/build' > make: *** [Makefile:155: all] Error 2 > command "make" "-j" "4" failed with status 2 > note: keeping build directory `/tmp/guix-build-avogadro-1.2.0.drv-0' > builder for > `/gnu/store/pc3pdcpm0mwbfvymwizfs14mdfb6qa5x-avogadro-1.2.0.drv' failed > with exit code 1 > build of /gnu/store/pc3pdcpm0mwbfvymwizfs14mdfb6qa5x-avogadro-1.2.0.drv > failed Before that, I get: --8<---------------cut here---------------start------------->8--- [..] -- Setting new boost python libraries CMake Error: failed to create symbolic link '/tmp/guix-build-avogadro-1.2.0= .drv-0/build/libavogadro/include/avogadro//tmp/guix-build-avogadro-1.2.0.dr= v-0/build/libavogadro/src/config.h': no such file or directory -- Enabled python terminal CMake Warning at libavogadro/src/extensions/symmetry/libmsym/CMakeLists.txt= :44 (export): Cannot create package registry file: /homeless-shelter/.cmake/packages/libmsym/0734694d5c49e2816b4ae48943d77= 00a No such file or directory [..] --8<---------------cut here---------------end--------------->8--- then: --8<---------------cut here---------------start------------->8--- [..] /tmp/guix-build-avogadro-1.2.0.drv-0/avogadro-1.2.0-checkout/libavogadro/sr= c/extensions/symmetry/libmsym/src/orbital.c: In function =E2=80=98orbitalFr= omQuantumNumbers=E2=80=99: /tmp/guix-build-avogadro-1.2.0.drv-0/avogadro-1.2.0-checkout/libavogadro/sr= c/extensions/symmetry/libmsym/src/orbital.c:70:24: error: non-floating-poin= t argument in call to function =E2=80=98__builtin_signbit=E2=80=99 char *d =3D (signbit(m) =3D=3D 1 ? "-" : "+"); ^~~~~~~ /tmp/guix-build-avogadro-1.2.0.drv-0/avogadro-1.2.0-checkout/libavogadro/sr= c/extensions/symmetry/libmsym/src/orbital.c:76:24: error: non-floating-poin= t argument in call to function =E2=80=98__builtin_signbit=E2=80=99 char *d =3D (signbit(m) =3D=3D 1 ? "-" : "+"); ^~~~~~~ make[2]: *** [libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.d= ir/build.make:170: libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/m= sym.dir/src/orbital.c.o] Error 1 make[2]: Leaving directory '/tmp/guix-build-avogadro-1.2.0.drv-0/build' make[1]: *** [CMakeFiles/Makefile2:2069: libavogadro/src/extensions/symmetr= y/libmsym/CMakeFiles/msym.dir/all] Error 2 make[2]: Leaving directory '/tmp/guix-build-avogadro-1.2.0.drv-0/build' make[1]: *** [CMakeFiles/Makefile2:2069: libavogadro/src/extensions/symmetr= y/libmsym/CMakeFiles/msym.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.di= r/eyecandy.cpp.o [..] --8<---------------cut here---------------end--------------->8--- > I retried to build it by running guix build avogadro -K to look at the > makefile and found at line 155 I get the same thing. But I think the error comes from an early step. Well, then I am running: cd /tmp/guix-build-avogadro-1.2.0.drv-0 mkdir mine && cd mine guix environmment avogadro cmake ../avogadro-1.2.0-checkout/ --8<---------------cut here---------------start------------->8--- [..] CMake Error: failed to create symbolic link '/tmp/guix-build-avogadro-1.2.0= .drv-0/my/libavogadro/include/avogadro//tmp/guix-build-avogadro-1.2.0.drv-0= /my/libavogadro/src/config.h': no such file or directory [..] --8<---------------cut here---------------end--------------->8--- So I would try to address this first error by examining the folder avogadro= -1.2.0-checkout/. All the best, simon From debbugs-submit-bounces@debbugs.gnu.org Wed Sep 06 00:05:20 2023 Received: (at 44450-done) by debbugs.gnu.org; 6 Sep 2023 04:05:20 +0000 Received: from localhost ([127.0.0.1]:60473 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qdjn5-0000kI-I1 for submit@debbugs.gnu.org; Wed, 06 Sep 2023 00:05:19 -0400 Received: from mail-qv1-xf2e.google.com ([2607:f8b0:4864:20::f2e]:62724) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qdjn3-0000jz-VY for 44450-done@debbugs.gnu.org; Wed, 06 Sep 2023 00:05:18 -0400 Received: by mail-qv1-xf2e.google.com with SMTP id 6a1803df08f44-6543d62e9a4so2615906d6.1 for <44450-done@debbugs.gnu.org>; Tue, 05 Sep 2023 21:05:17 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20221208; t=1693973111; x=1694577911; darn=debbugs.gnu.org; h=mime-version:user-agent:message-id:in-reply-to:date:references :subject:cc:to:from:from:to:cc:subject:date:message-id:reply-to; bh=Jd1h4onNYRwY6JMO624uQuiobCjSGDwcs7gcWCEllHI=; b=d5Da1skO0P4DmVmFs6rlveVEPqqAP/muhKwr36pk0ojBRdBBuQ/uzGYiLuQjfbhnTX dlw632k4k4QWfGfujb/P4knGd++CE/Aw/xvzU89ndFeAMAAs7H9BdiSL7ieEDKTKXDh2 GRqpo0mzlJo8LlMUiBkjKfYUKHiqubwCejLunOHHNbe7/kKq3jTXzDIX48gG5Z+cF88B fUfPpqST9yXDwi5WIMuZveYzxnXes0qYSFxEYiUdQmGZMG6G2bLJzUsI0mPlnNvnX3v5 xCd1HUhCox8zGueQYkLbQTc+M7VZAOEzkO1GQOgRgpgT7GuVFhB+08HZzYNS5Nmx6Qiy pfTg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20221208; t=1693973111; x=1694577911; h=mime-version:user-agent:message-id:in-reply-to:date:references :subject:cc:to:from:x-gm-message-state:from:to:cc:subject:date :message-id:reply-to; bh=Jd1h4onNYRwY6JMO624uQuiobCjSGDwcs7gcWCEllHI=; b=Ju4OQNyON60zdnSGWC9266y+X4UJdvXkKYHWdMVsbb4eFWf3uXF5Qhz+lfR/6V4RKd ZiqLt8WE6wmcwAIMPABsbKW+94B9tqHbus8Xeuxg6l1tghE/ZVSWDX9xvZbvVO8BZLYK bpxigOhi6EdiUdiOnM3AOHtiMpEXr2Px60MoQZE3bqk81JWtb/4d+85g1e18Yfsyo4Ii yx0Q+NuIP7WaHalcPcjmSuOrY/nwr51nCUw639nVgWaRxLqLETqMbwFW6r7iyVjUxpHN kgkCL34z8q04tTD9ojjr49uusATN8Yn+u6/aYdJkTkHaY4P/+Hqw4q39VVCWqDgqVNL/ DSJQ== X-Gm-Message-State: AOJu0Ywq+xgbHglSZVDgpvh6QsQQeIzKhEj/rZxqvLE73+81kOEsYk2s KgCQrhZMUDiiMJRDWHY2s7WGYsqy+b8VMA== X-Google-Smtp-Source: AGHT+IF0HamUSxJ5jD0bDkTZl+vzh3cJuLVmdfnLGLNMKjaZZ0yVp4YAgA+07z/f2YLWB+KEMhosHg== X-Received: by 2002:a0c:f50f:0:b0:63c:6af2:d26e with SMTP id j15-20020a0cf50f000000b0063c6af2d26emr20420465qvm.6.1693973111289; Tue, 05 Sep 2023 21:05:11 -0700 (PDT) Received: from hurd (dsl-153-125.b2b2c.ca. [66.158.153.125]) by smtp.gmail.com with ESMTPSA id w16-20020a0cdf90000000b00647386a3234sm5078772qvl.85.2023.09.05.21.05.10 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 05 Sep 2023 21:05:10 -0700 (PDT) From: Maxim Cournoyer To: zimoun Subject: Re: bug#44450: Issues installing Avogadro References: <2f4832e0-c173-bd24-fd77-9d6b587f6095@gmail.com> <86mtzq9kmt.fsf@gmail.com> Date: Wed, 06 Sep 2023 00:05:09 -0400 In-Reply-To: <86mtzq9kmt.fsf@gmail.com> (zimoun's message of "Tue, 10 Nov 2020 00:27:06 +0100") Message-ID: <87a5u09cay.fsf@gmail.com> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/28.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 44450-done Cc: Godefroy Vannoye , 44450-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, zimoun writes: > Dear, > > Thank you for the report. > > On Wed, 04 Nov 2020 at 19:17, Godefroy Vannoye wrote: > >> First let me apologize if I have missed something, I'm a new user of >> guix and know only the basics about compilation processes. > > Welcome! :-) > > >> I am using guix on the Arch distribution, and installed it using the >> shell installer script. My first tests seem to indicate that guix is >> installed properly. > > The Guix Data Service indicates that the package avogrado is broken. > > https://data.guix.gnu.org/repository/1/branch/master/package/avogadro/output-history We now have avogradro2, which builds correctly. -- Thanks, Maxim From unknown Sun Aug 17 09:10:35 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Wed, 04 Oct 2023 11:24:23 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator