GNU bug report logs - #44311
[PATCH] gnu: Add r-deconstructsigs.

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From: Aniket Patil <aniket112.patil <at> gmail.com>
To: 44311 <at> debbugs.gnu.org
Cc: Aniket Patil <aniket112.patil <at> gmail.com>
Subject: [bug#44311] [PATCH] gnu: Add r-deconstructsigs.
Date: Thu, 29 Oct 2020 22:39:49 +0530

* gnu/packages/cran.scm (r-deconstructsigs): New variable.
---
 gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 82caaf54f6..75d9ae7de2 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24715,3 +24715,33 @@ modal regression and conditional density estimation in the
 presence/absence of measurement error. Bandwidth selection is 
 also provided for each method.")
     (license license:gpl2+)))
+
+(define-public r-deconstructsigs
+  (package
+    (name "r-deconstructsigs")
+    (version "1.8.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "deconstructSigs" version))
+        (sha256
+          (base32
+            "014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"))))
+    (properties
+      `((upstream-name . "deconstructSigs")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-bsgenome" ,r-bsgenome)
+        ("r-bsgenome-hsapiens-ucsc-hg19"
+         ,r-bsgenome-hsapiens-ucsc-hg19)
+        ("r-genomeinfodb" ,r-genomeinfodb)
+        ("r-reshape2" ,r-reshape2)))
+    (home-page
+      "https://github.com/raerose01/deconstructSigs")
+    (synopsis "Identifies Signatures Present in a Tumor Sample")
+    (description
+      "Takes sample information in the form of the fraction of 
+mutations in each of 96 trinucleotide contexts and identifies 
+the weighted combination of published signatures that, when summed, 
+most closely reconstructs the mutational profile.")
+    (license license:gpl2+)))
-- 
2.28.0

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