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Reply-To: bug#44311 <44311@debbugs.gnu.org> Date: Fri, 15 Aug 2025 10:56:20 +0000 retitle 44311 [PATCH] gnu: Add r-deconstructsigs. reassign 44311 guix-patches submitter 44311 Aniket Patil severity 44311 normal tag 44311 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Thu Oct 29 13:11:52 2020 Received: (at submit) by debbugs.gnu.org; 29 Oct 2020 17:11:52 +0000 Received: from localhost ([127.0.0.1]:54826 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kYBSq-0001sg-DU for submit@debbugs.gnu.org; Thu, 29 Oct 2020 13:11:52 -0400 Received: from lists.gnu.org ([209.51.188.17]:59588) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kYBSo-0001sY-R3 for submit@debbugs.gnu.org; Thu, 29 Oct 2020 13:11:51 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:35870) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kYBSo-0006OD-Mi for guix-patches@gnu.org; Thu, 29 Oct 2020 13:11:50 -0400 Received: from mail-pg1-x536.google.com ([2607:f8b0:4864:20::536]:44558) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kYBSm-0002kQ-Ta for guix-patches@gnu.org; Thu, 29 Oct 2020 13:11:50 -0400 Received: by mail-pg1-x536.google.com with SMTP id o3so2855878pgr.11 for ; Thu, 29 Oct 2020 10:11:48 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=eXpo2fGTcT51sgx/Ei1teNzeZ8GfnHn5kVsmUhoZba0=; b=E8GNW8b4TYZrX1qNCPtyb6dGFjpYmq/GoppUqrKnZbuAjoR/2DWstZTojnaGnkY1hP oLpgdsTbKc0L9zljXQlAAEGJkZEFATrOYGU7A8XTQYiXffphICkgl+7bl0bgNuwwL5R5 i2Wte/Ez0tCalx8J23zvMOjfqGGY66ajash7nPL6S5OI9sodA01jfUBb7UwZLYQA0Ogp Iqu/GNjxUEiu30Gl9Crn3RaYfYwfjrghIdHKxqzEARmyo6hGQDS+ZJFxEsmQXFpVK0jk GLxd/YhAf4uONCpf9zlnoI/mX9mvcZTdxy6hzFHUmnbxFWgzAkK68hKRaGyPV2MKbZmT MAhA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=eXpo2fGTcT51sgx/Ei1teNzeZ8GfnHn5kVsmUhoZba0=; b=NJXgmKG/aL3hWb7Pcs37te/yAR2sTN1OujTNWKuKP7JS38qk4+1XHPLFxBJ8mMUxm5 5jpXfS4ODTMGprt7SiZvDf8eQDOPgjFk7PuFGy7nwTicJllb+ThopA7FDY2lW+nqCF21 U0Vmzvh/0kTWIKZekVvQxR4KX+qorh+22ibKmfRh8ETBcYVUzt5WdeGNjgJ3hvzm9biJ SMxK+9Lw2UKrNR1a+olnduEDgmUjDxr0iHOTTix9rHjN1eO6mAWjOcuNCqXQYW8sQHch d4q6SDJH1eeysXAwe2NUXATW+Ayvcq8FZbUg1tmiZFr3dTOAxWQ6svn7sC31gbHs3LO0 kI4A== X-Gm-Message-State: AOAM532UIUzI0Vx/7JaYidf0qjWsSrTrY6r48RlD+88x95PzDgY6VE+T x2bFvDlrYMNoJpwVCiprPgyMeXySqc6YGoJq X-Google-Smtp-Source: ABdhPJxKoO/3XL6mGchtINyviRmsSssrFjoeS4cmxUtKvc1UhfmCxshm8UF1ROuLoMtRk+7pE505vA== X-Received: by 2002:a17:90a:ed87:: with SMTP id k7mr735983pjy.127.1603991507031; Thu, 29 Oct 2020 10:11:47 -0700 (PDT) Received: from localhost.localdomain ([59.153.2.10]) by smtp.gmail.com with ESMTPSA id x26sm3546086pfn.178.2020.10.29.10.11.45 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 29 Oct 2020 10:11:46 -0700 (PDT) From: Aniket Patil To: guix-patches@gnu.org Subject: [PATCH] gnu: Add r-deconstructsigs. Date: Thu, 29 Oct 2020 22:39:49 +0530 Message-Id: <20201029170949.178605-1-aniket112.patil@gmail.com> X-Mailer: git-send-email 2.28.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=2607:f8b0:4864:20::536; envelope-from=aniket112.patil@gmail.com; helo=mail-pg1-x536.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.7 (/) X-Debbugs-Envelope-To: submit Cc: Aniket Patil X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/cran.scm (r-deconstructsigs): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 82caaf54f6..75d9ae7de2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -24715,3 +24715,33 @@ modal regression and conditional density estimation in the presence/absence of measurement error. Bandwidth selection is also provided for each method.") (license license:gpl2+))) + +(define-public r-deconstructsigs + (package + (name "r-deconstructsigs") + (version "1.8.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "deconstructSigs" version)) + (sha256 + (base32 + "014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a")))) + (properties + `((upstream-name . "deconstructSigs"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome) + ("r-bsgenome-hsapiens-ucsc-hg19" + ,r-bsgenome-hsapiens-ucsc-hg19) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-reshape2" ,r-reshape2))) + (home-page + "https://github.com/raerose01/deconstructSigs") + (synopsis "Identifies Signatures Present in a Tumor Sample") + (description + "Takes sample information in the form of the fraction of +mutations in each of 96 trinucleotide contexts and identifies +the weighted combination of published signatures that, when summed, +most closely reconstructs the mutational profile.") + (license license:gpl2+))) -- 2.28.0 From debbugs-submit-bounces@debbugs.gnu.org Tue Dec 22 13:19:50 2020 Received: (at 44311) by debbugs.gnu.org; 22 Dec 2020 18:19:50 +0000 Received: from localhost ([127.0.0.1]:50887 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1krmGE-0006Em-9b for submit@debbugs.gnu.org; Tue, 22 Dec 2020 13:19:50 -0500 Received: from mail-wm1-f44.google.com ([209.85.128.44]:36487) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1krmGB-0006EX-J5 for 44311@debbugs.gnu.org; Tue, 22 Dec 2020 13:19:49 -0500 Received: by mail-wm1-f44.google.com with SMTP id y23so3027784wmi.1 for <44311@debbugs.gnu.org>; Tue, 22 Dec 2020 10:19:47 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:references:date:in-reply-to:message-id :user-agent:mime-version:content-transfer-encoding; bh=tHZI2ewFOen+898eq7t7swMFhJMUFcp08FZ0Z+geqlY=; b=TyrIHWf3kBUn/0T+CarNfbDt62N9vzHARa3TfYTYHS5CTa8mit1M0xpudMOfbvG/u4 tEPpKqMStvcCV6TA0qyT5QFmpk2bC0Z/bcCVdO788VoWmml+1rFuqTAS6Gi6Jg8VKFOj ZckrEpNOUbFy/xtY3xZwMfzFdjsZtrsNkatxpCxHUVTyGst+TT/04sjZ54bCZt1FGJ6c IkQ7LKGU47KSAiTYnK9+Rh9+5PrieQ8lNivKiztYtbwHwx8zdJSfG03e6LZ1i+TWU70o amg33ikBJhhrhEu+Mom4ePzULB/9JYPXfcRfPTl/5TS76lnIIgaark8t2L+MYJUZrG4x beCA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:references:date:in-reply-to :message-id:user-agent:mime-version:content-transfer-encoding; bh=tHZI2ewFOen+898eq7t7swMFhJMUFcp08FZ0Z+geqlY=; b=bpf7OzRZ5vpq8nb9515xJC8lx9Csv/O93o66g9WpHRoVo9qd78l3aYN4LHJFauH41z KNfjNI+3D+C5FrK1QusINGzde/HTMJXcCJQ4/15ITXAp9Fw9fS/1HY5/nNi6bIbxY2/T cml6hESdMDX/9updKuK9cIB49mmivk5gWdw2zhfvNpTIn8BgfoPbY1GSxIxmFePF3fGx Betk3huCsg5jNzn3uaV1NxxGRXVxy5FsENzqbmMbB2PAyDwREzSJ1vktbjJxAacBrAms p/O6XdDHDOtXwIjaMkdL7iwsN3GcLJwLVcKq4cie9DB+F+cqdc+xLC0NiB0e3f3rOx8G WfMg== X-Gm-Message-State: AOAM531eKmxNiulLf0xWRsqJcMIKc+/Vk2BbnDBq2c9u6urfJm2lLj9z MCdZV/iJFhnXdOH4evbCjpaxxi6ZL5A= X-Google-Smtp-Source: ABdhPJywpZ4qEioIcpzPBQbs+UI5xX9f5ODUmu3eOJV9WBsRT+SXfmhTy2ZJ7mC31JiBqlBtHUhAaw== X-Received: by 2002:a1c:6746:: with SMTP id b67mr22946135wmc.8.1608661181651; Tue, 22 Dec 2020 10:19:41 -0800 (PST) Received: from lili (oul69-1-82-232-2-3.fbx.proxad.net. [82.232.2.3]) by smtp.gmail.com with ESMTPSA id n189sm27916826wmf.20.2020.12.22.10.19.40 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 22 Dec 2020 10:19:41 -0800 (PST) From: zimoun To: Aniket Patil , Ricardo Wurmus Subject: Re: [bug#44311] [PATCH] gnu: Add r-deconstructsigs. References: <20201029170949.178605-1-aniket112.patil@gmail.com> Date: Tue, 22 Dec 2020 19:15:41 +0100 In-Reply-To: <20201029170949.178605-1-aniket112.patil@gmail.com> (Aniket Patil's message of "Thu, 29 Oct 2020 22:39:49 +0530") Message-ID: <868s9pu2pe.fsf@gmail.com> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.1 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 44311 Cc: 44311@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi Aniket, (CC Ricardo since it could provide the correct gitlogy magic :-)) The patch does not apply because the file gnu/packages/cran.scm changed in the meantime. I am sorry that we have not been enough reactive. However, when creating the patch, you had used the option =E2=80=99--base= =E2=80=99; which really helps because I would be able to apply it and rebase myself. Currently, I do not know how to do without copy/pasting by hand, so loosing your authorship. Could you rebase on the top of master? If you cannot, no worry. Just let me know. Ricardo, any tip to bypass this kind of issue? On Thu, 29 Oct 2020 at 22:39, Aniket Patil wrot= e: > * gnu/packages/cran.scm (r-deconstructsigs): New variable. > --- > gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ > 1 file changed, 30 insertions(+) > > diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm > index 82caaf54f6..75d9ae7de2 100644 > --- a/gnu/packages/cran.scm > +++ b/gnu/packages/cran.scm > @@ -24715,3 +24715,33 @@ modal regression and conditional density estimat= ion in the > presence/absence of measurement error. Bandwidth selection is=20 > also provided for each method.") > (license license:gpl2+))) > + > +(define-public r-deconstructsigs > + (package > + (name "r-deconstructsigs") > + (version "1.8.0") > + (source > + (origin > + (method url-fetch) > + (uri (cran-uri "deconstructSigs" version)) > + (sha256 > + (base32 > + "014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a")))) > + (properties > + `((upstream-name . "deconstructSigs"))) > + (build-system r-build-system) > + (propagated-inputs > + `(("r-bsgenome" ,r-bsgenome) > + ("r-bsgenome-hsapiens-ucsc-hg19" > + ,r-bsgenome-hsapiens-ucsc-hg19) > + ("r-genomeinfodb" ,r-genomeinfodb) > + ("r-reshape2" ,r-reshape2))) > + (home-page > + "https://github.com/raerose01/deconstructSigs") > + (synopsis "Identifies Signatures Present in a Tumor Sample") > + (description > + "Takes sample information in the form of the fraction of=20 > +mutations in each of 96 trinucleotide contexts and identifies=20 > +the weighted combination of published signatures that, when summed,=20 > +most closely reconstructs the mutational profile.") > + (license license:gpl2+))) Cheers, simon From debbugs-submit-bounces@debbugs.gnu.org Tue Dec 22 14:07:43 2020 Received: (at 44311) by debbugs.gnu.org; 22 Dec 2020 19:07:43 +0000 Received: from localhost ([127.0.0.1]:50921 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1krn0Y-0007Pu-Mi for submit@debbugs.gnu.org; Tue, 22 Dec 2020 14:07:42 -0500 Received: from wout4-smtp.messagingengine.com ([64.147.123.20]:39271) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1krn0S-0007Pa-PK for 44311@debbugs.gnu.org; Tue, 22 Dec 2020 14:07:40 -0500 Received: from compute3.internal (compute3.nyi.internal [10.202.2.43]) by mailout.west.internal (Postfix) with ESMTP id 90EEAB3D; Tue, 22 Dec 2020 14:07:30 -0500 (EST) Received: from mailfrontend2 ([10.202.2.163]) by compute3.internal (MEProxy); Tue, 22 Dec 2020 14:07:30 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=famulari.name; h=date:from:to:cc:subject:message-id:references:mime-version :content-type:in-reply-to; s=mesmtp; bh=JXZa4m3bxsFYcs34dEtY1Jif 1tLPNV9G5tQEFv7C70U=; b=HmaRqdO/7pj4Bsy/TzzGlSSiWlIUmOHahqSOp6z4 p01k18oEMZQtQM/ewBNPRP0eQkjSXGrQAC98XQATdPfSdh/KR6kIjj1Bb118uSzh CSS7eUeZECvkYr0mw54TXvmjt8Sh7UPyehegvfYN3LKD0W7tKD+DIIccVVKguXqr +yE= DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-type:date:from:in-reply-to :message-id:mime-version:references:subject:to:x-me-proxy :x-me-proxy:x-me-sender:x-me-sender:x-sasl-enc; s=fm1; bh=JXZa4m 3bxsFYcs34dEtY1Jif1tLPNV9G5tQEFv7C70U=; b=aAbZzz5hVC0yPE4WbP3uDM LEEmhP9ngO5sn3TMA3V8ZaFW9u0f+uu5HZ97SRCdctLkOnwxf7emLICl1HISiLu5 a9n8cXoAA311CjOAjWdSTLDdA5Z2v5VXs3xNPhW0yj+6l+Bcz1aEvugvo6l4sEkb POj4Sf+9SWHQ0ZB2ybFK9xxyUjLtvk7yYdB9dIOtgtIlwcYv1xKK8Zg24DZFGAX8 /Ozh8ZeyRHs9DypdsGD9iEKulMyMaWCtaxDc1xGJqvDjL3SFgNYsjMMzVvHLq6T3 EQJVU8X/MNcITPf46RK5M32l/1O5+cM8i7UavU4dCxv+3b5XsqTTrUg7IVrgxoUg == X-ME-Sender: X-ME-Proxy-Cause: gggruggvucftvghtrhhoucdtuddrgedujedrvddtgedguddvvdcutefuodetggdotefrod ftvfcurfhrohhfihhlvgemucfhrghsthforghilhdpqfgfvfdpuffrtefokffrpgfnqfgh necuuegrihhlohhuthemuceftddtnecusecvtfgvtghiphhivghnthhsucdlqddutddtmd enucfjughrpeffhffvuffkfhggtggujgesthdtredttddtvdenucfhrhhomhepnfgvohcu hfgrmhhulhgrrhhiuceolhgvohesfhgrmhhulhgrrhhirdhnrghmvgeqnecuggftrfgrth htvghrnhepueekkedtffdvtddugeejgedtvefhueefiedvjeeitdeigedtveejvdejheff vefgnecukfhppeejfedrudeguddruddvjedrudegieenucevlhhushhtvghrufhiiigvpe dtnecurfgrrhgrmhepmhgrihhlfhhrohhmpehlvghosehfrghmuhhlrghrihdrnhgrmhgv X-ME-Proxy: Received: from localhost (c-73-141-127-146.hsd1.pa.comcast.net [73.141.127.146]) by mail.messagingengine.com (Postfix) with ESMTPA id CA6821080066; Tue, 22 Dec 2020 14:07:29 -0500 (EST) Date: Tue, 22 Dec 2020 14:07:27 -0500 From: Leo Famulari To: zimoun Subject: Re: [bug#44311] [PATCH] gnu: Add r-deconstructsigs. Message-ID: References: <20201029170949.178605-1-aniket112.patil@gmail.com> <868s9pu2pe.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline In-Reply-To: <868s9pu2pe.fsf@gmail.com> X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 44311 Cc: Ricardo Wurmus , 44311@debbugs.gnu.org, Aniket Patil X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) On Tue, Dec 22, 2020 at 07:15:41PM +0100, zimoun wrote: > Currently, I do not know how to do without copy/pasting by hand, so > loosing your authorship. Could you rebase on the top of master? `git commit` allows you to choose the author. In cases like this one, I sometimes use that feature: $ git commit --signoff --author="Aniket Patil " If you wanted to make it really seamless, you can also reset the date: $ git commit --signoff --author="Aniket Patil " --date="Thu, 29 Oct 2020 22:39:49 +0530" From debbugs-submit-bounces@debbugs.gnu.org Tue Dec 22 17:38:39 2020 Received: (at 44311-done) by debbugs.gnu.org; 22 Dec 2020 22:38:39 +0000 Received: from localhost ([127.0.0.1]:51137 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1krqIh-0006lb-3a for submit@debbugs.gnu.org; Tue, 22 Dec 2020 17:38:39 -0500 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21041) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1krqIf-0006lQ-8Q for 44311-done@debbugs.gnu.org; Tue, 22 Dec 2020 17:38:38 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1608676715; cv=none; d=zohomail.com; s=zohoarc; b=ILtA9TuAo1ae7o5vQt6wUoSrMD7KUpQYZeV0J6zhLFYB1xZZ59kAzwFPWGJGvwNYhMWJKy9f8DfQIq6ExUn4s5Wgdl4p0Hspd8+KVoLw6e6oeCsnpUCiCopWlyt1whUtjBE7pdQ2/ZPlDWKE0rg12LrkI3/K6GO6AJRKf7ba72o= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1608676715; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=h5JSib5zLshdkBQo+1OWjzuCxXHMeejbkohDpuDzP5Q=; b=HGS7KbtPJVGD9QfBgCZEvcGWb7uLIuTZSt72Ij8/d/faUtL2LpYb/OsVfv9Fv3C2hOTSVcW9nFRyQ32i5EjLO9nDw3DeoyYXP2YaiJHyLLQcW1iLp+AqdB4IyFTMFkhNNLCa1+GXUCDbGe97uOdF+w+XPpIZn0jnfIdCk8yVswQ= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1608676715; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=h5JSib5zLshdkBQo+1OWjzuCxXHMeejbkohDpuDzP5Q=; b=hpXcy3VF+6lGHrtCUu04RL4V0C46wfx9qnjupXfgtUIZ5tHIYDIAKtnbYxtIcOD9 yIxallXjR0TprzalDdTMyrRBnzb4jO6jDGojxJqQ8fKQkvS42/ud2W8H2pWCk4ulZ+j 6QNzoFApEadaO+9jgBs+A1Ab+SC60tMl7A9+Q+08= Received: from localhost (p54ad4ffa.dip0.t-ipconnect.de [84.173.79.250]) by mx.zohomail.com with SMTPS id 1608676714190625.9159212027448; Tue, 22 Dec 2020 14:38:34 -0800 (PST) References: <20201029170949.178605-1-aniket112.patil@gmail.com> User-agent: mu4e 1.4.13; emacs 27.1 From: Ricardo Wurmus To: Aniket Patil Subject: Re: [bug#44311] [PATCH] gnu: Add r-deconstructsigs. In-reply-to: <20201029170949.178605-1-aniket112.patil@gmail.com> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Tue, 22 Dec 2020 23:38:30 +0100 Message-ID: <87wnx9mpp5.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 44311-done Cc: 44311-done@debbugs.gnu.org, zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi Aniket, > * gnu/packages/cran.scm (r-deconstructsigs): New variable. I=E2=80=99m sorry, but we need to drop this patch because gnu/packages/bioconductor.scm already contains this definition. =E2=80=9CAlready=E2=80=9D really isn=E2=80=99t quite the right word, becaus= e you submitted your patch before I added the definition to the bioconductor module when Simon and I upgraded our CRAN and Bioconductor packages. This package is in the bioconductor module because it depends on the Bioconductor package r-bsgenome-hsapiens-ucsc-hg19. --=20 Ricardo From debbugs-submit-bounces@debbugs.gnu.org Wed Dec 23 03:59:57 2020 Received: (at 44311-done) by debbugs.gnu.org; 23 Dec 2020 08:59:57 +0000 Received: from localhost ([127.0.0.1]:51841 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1krzzx-0003HB-1J for submit@debbugs.gnu.org; Wed, 23 Dec 2020 03:59:57 -0500 Received: from mail-ed1-f45.google.com ([209.85.208.45]:38032) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1krzzu-0003GT-JE for 44311-done@debbugs.gnu.org; Wed, 23 Dec 2020 03:59:56 -0500 Received: by mail-ed1-f45.google.com with SMTP id cw27so15536168edb.5 for <44311-done@debbugs.gnu.org>; Wed, 23 Dec 2020 00:59:54 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:in-reply-to:references:date:message-id :mime-version:content-transfer-encoding; bh=pA0bokOv4CmuHJ/AOo4grSr+6xUyb49q9tOCYwDOKPg=; b=bLsjNZkJzsL2ov6Dukhrc1BQk3lz10XUdOuI84GUrXTYccDdH0DVOi8FLKwGSohw4M rLLD5CVNyLcl4KlBlvbR9+kL/h+w2XzGdhfv/z/ayFS9t8Jp5kgR295KXmnBs97tM9ru KDHvdfR1ZjQ2/z1hTLpKjtAZws2gkBYISNqEVIjWYSUOgrz7zpe/jNAvE6G0S7amDNMf RYjX0jLKvPV9TvmzgGafCuimMXCoAfFSahTMtEELf3HXcDCzuognq5lyniPoy6LNXlh/ LuMT3cFn2Qxo62KPI3lqItawla6j89HA1GGCrfhCqah8/OsrEQWVXx+VXM7p28vSOeRz r82Q== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:in-reply-to:references:date :message-id:mime-version:content-transfer-encoding; bh=pA0bokOv4CmuHJ/AOo4grSr+6xUyb49q9tOCYwDOKPg=; b=RzwdPSEAZXA/B3PfeSFekWxHsZAqnOR8w4pZENtEcLRE/IAvO3Z2Nb5mBlBjgrOqeA c9NW334KJrQesTyyrPlUs/k1bmB8HgrJS2fbQ0VzdvXmNfXi5SaYUd2r5vttwR5i7sbf 171xftO8mS0F1hWr5gH36cbYUoLxBXszXCWjW8oyeuNFu9mxwiY9l24FE47tYFgX7Wdx 2vSYGzhgsnRbB2/y0rzpXKwO1pnAqqE681/lTIwoMR3mZq65p5d4cvijsVv/LWzI8sk5 onAJknuMsFNhv4aU3iqocRvp30FI9mK8rXrbq0jT/83RyP10kF7ZFoYthgBiC4IvVKJQ L5Vg== X-Gm-Message-State: AOAM53377XmGCQCTcxBObAwGlL3+1TtIbvyAaYlhn4/1vFqfKIATQh3d 7Ppk0DKi9QHqUuSi3s0gHEhlwQxSO8E= X-Google-Smtp-Source: ABdhPJy/oXSrhnSEGGBtiSX9ZagmMYmmRY8/5MWfWCYQjjReO9DRkgIuc0eSGhQspMM23z79WnldsQ== X-Received: by 2002:a05:6402:2070:: with SMTP id bd16mr23010807edb.107.1608713988886; Wed, 23 Dec 2020 00:59:48 -0800 (PST) Received: from lili ([2a01:e35:2e80:2030:3231:7ae:dc70:aacf]) by smtp.gmail.com with ESMTPSA id p12sm8131076eds.39.2020.12.23.00.59.47 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 23 Dec 2020 00:59:48 -0800 (PST) From: zimoun To: Ricardo Wurmus , Aniket Patil Subject: Re: [bug#44311] [PATCH] gnu: Add r-deconstructsigs. In-Reply-To: <87wnx9mpp5.fsf@elephly.net> References: <20201029170949.178605-1-aniket112.patil@gmail.com> <87wnx9mpp5.fsf@elephly.net> Date: Wed, 23 Dec 2020 09:51:51 +0100 Message-ID: <86k0t8sy54.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 44311-done Cc: 44311-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi Aniket, On Tue, 22 Dec 2020 at 23:38, Ricardo Wurmus wrote: >> * gnu/packages/cran.scm (r-deconstructsigs): New variable. > > I=E2=80=99m sorry, but we need to drop this patch because > gnu/packages/bioconductor.scm already contains this definition. > > =E2=80=9CAlready=E2=80=9D really isn=E2=80=99t quite the right word, beca= use you submitted your > patch before I added the definition to the bioconductor module when > Simon and I upgraded our CRAN and Bioconductor packages. Sorry Aniket to not have noticed and used your patch instead. All the best, simon From debbugs-submit-bounces@debbugs.gnu.org Wed Dec 23 04:00:02 2020 Received: (at 44311) by debbugs.gnu.org; 23 Dec 2020 09:00:03 +0000 Received: from localhost ([127.0.0.1]:51843 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks002-0003I6-8M for submit@debbugs.gnu.org; Wed, 23 Dec 2020 04:00:02 -0500 Received: from mail-ed1-f51.google.com ([209.85.208.51]:39349) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1krzzs-0003GN-VJ for 44311@debbugs.gnu.org; Wed, 23 Dec 2020 03:59:56 -0500 Received: by mail-ed1-f51.google.com with SMTP id c7so15502923edv.6 for <44311@debbugs.gnu.org>; Wed, 23 Dec 2020 00:59:52 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:in-reply-to:references:date:message-id :mime-version; bh=9xCvpfu1elMTjeNcPUa+zNlkD0jWcBvvBjTZizGtjaU=; b=c1n5BZvIN4EvIL41hJVmMN2m1nVnmtk8kLlvEn4wXZyaoBeG3MBylq5p8DSZQvVSos 5gk5zFf6tBuwfZ5x56eUCb1hK1jgPEoCcqjxGcmbQQ8hcIqy9mOtqhEITo1SZFzgHlDQ HY40j/keYHYtaZYaEWd6PiUlFtznM33Ybsc9UsNGklFnwPXnf/Qcsn3JsAMcS0G9RcOh 97MiiE/MkLJ/NAquHPZgUbqnkJLHvd8f2AGWHDhiLHb9s+7Lc58rmwTqBeCz0Au2Ii0G ytJTBVJTLrwSjS+qdEb0PgHfpsMakWNceRd8PYSW2MQJAq5H/lD4maVz8CKUOM9EmXh4 CkUA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:in-reply-to:references:date :message-id:mime-version; bh=9xCvpfu1elMTjeNcPUa+zNlkD0jWcBvvBjTZizGtjaU=; b=BNegpCnkblxaUHuEpIvr1E5tQCDx4mhk58edDVeNWd36bLT423Eq4PhZI84s2fzubd J8bEj+OV2yI9fEERNX97NPmXpIINIOTdNMi/qK5nDwGiFwWL+Wu4aCBE2136OREbP2zK l+jt3E54fi5aMx2IN3TtY7r9/7xMBz8XHtJwYR5sKkqCMyFLxow9IDv+5QiHOqH89rEi UOR3wgQ3HiPS3/RoDghsa4DDdRpET5ynPx9RYUPfbPx3Fe7E9p7knHdG/R0c/a8nRyWh Dhk4Ps8sHmHc0vNQgiWBUpNU3bWMPnFtTcvFXK3OzoFB+FiBAuGk0WgUSO5guiwj6L8y HKsA== X-Gm-Message-State: AOAM531ZmyG7GJYJXrSZuZimatMS3dJnZnsQ21U8MdMILTFuUJJazb8J 1dpu2ftSGW5zHR57afRdzc3c4Kb5Sdg= X-Google-Smtp-Source: ABdhPJxZdF1gUYCbFJaqGULZwuykhJoLLwf82BapGHlCKcjifX3yQe17ctjrGv6fVvLgSziyyu/GIA== X-Received: by 2002:a50:ab51:: with SMTP id t17mr23926285edc.89.1608713987014; Wed, 23 Dec 2020 00:59:47 -0800 (PST) Received: from lili ([2a01:e35:2e80:2030:3231:7ae:dc70:aacf]) by smtp.gmail.com with ESMTPSA id m24sm11264388ejo.52.2020.12.23.00.59.46 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 23 Dec 2020 00:59:46 -0800 (PST) From: zimoun To: Leo Famulari Subject: Re: [bug#44311] [PATCH] gnu: Add r-deconstructsigs. In-Reply-To: References: <20201029170949.178605-1-aniket112.patil@gmail.com> <868s9pu2pe.fsf@gmail.com> Date: Wed, 23 Dec 2020 09:49:44 +0100 Message-ID: <86mty4sy8n.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 44311 Cc: Ricardo Wurmus , 44311@debbugs.gnu.org, Aniket Patil X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi Leo, On Tue, 22 Dec 2020 at 14:07, Leo Famulari wrote: > On Tue, Dec 22, 2020 at 07:15:41PM +0100, zimoun wrote: >> Currently, I do not know how to do without copy/pasting by hand, so >> loosing your authorship. Could you rebase on the top of master? > > `git commit` allows you to choose the author. In cases like this one, I > sometimes use that feature: > > $ git commit --signoff --author="Aniket Patil " > > If you wanted to make it really seamless, you can also reset the date: > > $ git commit --signoff --author="Aniket Patil " --date="Thu, 29 Oct 2020 22:39:49 +0530" Thank you. Once you wrote it, it appears obvious. :-) I have definitely lacked of imagination. Cheers, simon From unknown Fri Aug 15 03:56:20 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Wed, 20 Jan 2021 12:24:05 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator