Subject: [bug#44304] [PATCH] gnu: Update htslib to 1.11.

From: Roel Janssen <[email-masked]>
Date: Thu, 29 Oct 2020 12:01:07 +0100

On Thu, 2020-10-29 at 11:44 +0100, Roel Janssen wrote:
> Dear Guix,
> 
> I'd like to update htslib to 1.11.  The patch is straightfoward.
> 
> Kind regards,
> Roel Janssen

In addition to htslib, it'd be good to keep samtools and bcftools in
sync.  So here are the patches for bcftools and samtools.

Kind regards,
Roel Janssen

From 4025b622017f6ff0f365bf827c0f4bf06603f9ed Mon Sep 17 00:00:00 2001
From: Roel Janssen <[email-masked]>
Date: Thu, 29 Oct 2020 11:58:02 +0100
Subject: [PATCH 3/3] gnu: Update samtools to 1.11.

* gnu/packages/bioinformatics.scm (samtools): Update to 1.11.
---
 gnu/packages/bioinformatics.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a428ba1fed..4c49b00252 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5613,7 +5613,7 @@ to the user's query of interest.")
 (define-public samtools
   (package
     (name "samtools")
-    (version "1.9")
+    (version "1.11")
     (source
      (origin
        (method url-fetch)
@@ -5622,11 +5622,11 @@ to the user's query of interest.")
                        version "/samtools-" version ".tar.bz2"))
        (sha256
         (base32
-         "10ilqbmm7ri8z431sn90lvbjwizd0hhkf9rcqw8j823hf26nhgq8"))
+         "1dp5wknak4arnw5ghhif9mmljlfnw5bgm91wib7z0j8wdjywx0z2"))
        (modules '((guix build utils)))
        (snippet '(begin
                    ;; Delete bundled htslib.
-                   (delete-file-recursively "htslib-1.9")
+                   (delete-file-recursively "htslib-1.11")
                    #t))))
     (build-system gnu-build-system)
     (arguments
-- 
2.26.2

From 20a16449cd640f32798cb36f942eb44faaa9f661 Mon Sep 17 00:00:00 2001
From: Roel Janssen <[email-masked]>
Date: Thu, 29 Oct 2020 11:57:16 +0100
Subject: [PATCH 2/3] gnu: Update bcftools to 1.11.

* gnu/packages/bioinformatics.scm (bcftools): Update to 1.11.
---
 gnu/packages/bioinformatics.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 09216f6a8d..a428ba1fed 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -313,7 +313,7 @@ BAM files.")
 (define-public bcftools
   (package
     (name "bcftools")
-    (version "1.9")
+    (version "1.11")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/samtools/bcftools/"
@@ -321,11 +321,11 @@ BAM files.")
                                   version "/bcftools-" version ".tar.bz2"))
               (sha256
                (base32
-                "1j3h638i8kgihzyrlnpj82xg1b23sijibys9hvwari3fy7kd0dkg"))
+                "0r508mp15pqzf8r1269kb4v5naw9zsvbwd3cz8s1yj7carsf9viw"))
               (modules '((guix build utils)))
               (snippet '(begin
                           ;; Delete bundled htslib.
-                          (delete-file-recursively "htslib-1.9")
+                          (delete-file-recursively "htslib-1.11")
                           #t))))
     (build-system gnu-build-system)
     (arguments
-- 
2.26.2