GNU bug report logs - #44304
[PATCH] gnu: Update htslib to 1.11.

Previous Next

Package: guix-patches;

Reported by: Roel Janssen <roel <at> gnu.org>

Date: Thu, 29 Oct 2020 10:45:01 UTC

Severity: normal

Tags: patch

Done: Roel Janssen <roel <at> gnu.org>

Bug is archived. No further changes may be made.

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 44304 in the body.
You can then email your comments to 44304 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

View this report as an mbox folder, status mbox, maintainer mbox

Report forwarded to guix-patches <at> gnu.org:
bug#44304; Package guix-patches. (Thu, 29 Oct 2020 10:45:02 GMT) Full text and rfc822 format available.
Acknowledgement sent to Roel Janssen <roel <at> gnu.org>:
New bug report received and forwarded. Copy sent to guix-patches <at> gnu.org. (Thu, 29 Oct 2020 10:45:02 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Roel Janssen <roel <at> gnu.org>
To: guix-patches <at> gnu.org
Subject: [PATCH] gnu: Update htslib to 1.11.
Date: Thu, 29 Oct 2020 11:44:00 +0100

[Message part 1 (text/plain, inline)]
Dear Guix,

I'd like to update htslib to 1.11.  The patch is straightfoward.

Kind regards,
Roel Janssen

[0001-gnu-Update-htslib-to-1.11.patch (text/x-patch, attachment)]
Information forwarded to guix-patches <at> gnu.org:
bug#44304; Package guix-patches. (Thu, 29 Oct 2020 11:02:02 GMT) Full text and rfc822 format available.

Message #8 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Roel Janssen <roel <at> gnu.org>
To: guix-patches <at> gnu.org
Cc: 44304 <at> debbugs.gnu.org
Subject: Re: [PATCH] gnu: Update htslib to 1.11.
Date: Thu, 29 Oct 2020 12:01:07 +0100

[Message part 1 (text/plain, inline)]
On Thu, 2020-10-29 at 11:44 +0100, Roel Janssen wrote:
> Dear Guix,
> 
> I'd like to update htslib to 1.11.  The patch is straightfoward.
> 
> Kind regards,
> Roel Janssen

In addition to htslib, it'd be good to keep samtools and bcftools in
sync.  So here are the patches for bcftools and samtools.

Kind regards,
Roel Janssen



[0003-gnu-Update-samtools-to-1.11.patch (text/x-patch, attachment)]
[0002-gnu-Update-bcftools-to-1.11.patch (text/x-patch, attachment)]
Information forwarded to guix-patches <at> gnu.org:
bug#44304; Package guix-patches. (Thu, 29 Oct 2020 11:02:02 GMT) Full text and rfc822 format available.
Information forwarded to guix-patches <at> gnu.org:
bug#44304; Package guix-patches. (Thu, 29 Oct 2020 12:55:02 GMT) Full text and rfc822 format available.

Message #14 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Roel Janssen <roel <at> gnu.org>
Cc: 44304 <at> debbugs.gnu.org, guix-patches <at> gnu.org
Subject: Re: [bug#44304] [PATCH] gnu: Update htslib to 1.11.
Date: Thu, 29 Oct 2020 13:55:42 +0100

Roel Janssen <roel <at> gnu.org> writes:

> On Thu, 2020-10-29 at 11:44 +0100, Roel Janssen wrote:
>> Dear Guix,
>> 
>> I'd like to update htslib to 1.11.  The patch is straightfoward.
>> 
>> Kind regards,
>> Roel Janssen
>
> In addition to htslib, it'd be good to keep samtools and bcftools in
> sync.  So here are the patches for bcftools and samtools.

These patches look good to me!

-- 
Ricardo
Information forwarded to guix-patches <at> gnu.org:
bug#44304; Package guix-patches. (Thu, 29 Oct 2020 12:55:02 GMT) Full text and rfc822 format available.
Information forwarded to guix-patches <at> gnu.org:
bug#44304; Package guix-patches. (Thu, 29 Oct 2020 15:57:02 GMT) Full text and rfc822 format available.

Message #20 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Roel Janssen <roel <at> gnu.org>
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: 44304-done <at> debbugs.gnu.org, guix-patches <at> gnu.org
Subject: Re: [bug#44304] [PATCH] gnu: Update htslib to 1.11.
Date: Thu, 29 Oct 2020 16:56:24 +0100

On Thu, 2020-10-29 at 13:55 +0100, Ricardo Wurmus wrote:
> 
> Roel Janssen <roel <at> gnu.org> writes:
> 
> > On Thu, 2020-10-29 at 11:44 +0100, Roel Janssen wrote:
> > > Dear Guix,
> > > 
> > > I'd like to update htslib to 1.11.  The patch is straightfoward.
> > > 
> > > Kind regards,
> > > Roel Janssen
> > 
> > In addition to htslib, it'd be good to keep samtools and bcftools
> > in
> > sync.  So here are the patches for bcftools and samtools.
> 
> These patches look good to me!
> 

Thank you for the quick review! I pushed them in
bcbd536e3f22e7bcce6ef535171f4257c79d2f0c,
04a49b414303c329032f74de67541cc39d2271c6, and
f40add4dbb45a5a87fd5213e23e7ab0cc77c008e.

Kind regards,
Roel Janssen
Reply sent to Roel Janssen <roel <at> gnu.org>:
You have taken responsibility. (Thu, 29 Oct 2020 15:57:02 GMT) Full text and rfc822 format available.
Notification sent to Roel Janssen <roel <at> gnu.org>:
bug acknowledged by developer. (Thu, 29 Oct 2020 15:57:02 GMT) Full text and rfc822 format available.
bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Fri, 27 Nov 2020 12:24:04 GMT) Full text and rfc822 format available.
This bug report was last modified 4 years and 204 days ago.

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.